| Year |
Citation |
Score |
| 2023 |
Barata C, Snook RR, Ritchie MG, Kosiol C. Selection on the Fly: Short-Term Adaptation to an Altered Sexual Selection Regime in Drosophila pseudoobscura. Genome Biology and Evolution. 15. PMID 37341535 DOI: 10.1093/gbe/evad113 |
0.572 |
|
| 2022 |
Barata C, Borges R, Kosiol C. Bait-ER: A Bayesian method to detect targets of selection in Evolve-and-Resequence experiments. Journal of Evolutionary Biology. 36: 29-44. PMID 36544394 DOI: 10.1111/jeb.14134 |
0.743 |
|
| 2022 |
Borges R, Boussau B, Szöllősi GJ, Kosiol C. Nucleotide Usage Biases Distort Inferences of the Species Tree. Genome Biology and Evolution. 14. PMID 34983052 DOI: 10.1093/gbe/evab290 |
0.736 |
|
| 2019 |
Borges R, Kosiol C. Consistency and identifiability of the polymorphism-aware phylogenetic models. Journal of Theoretical Biology. 110074. PMID 31711991 DOI: 10.1016/J.Jtbi.2019.110074 |
0.754 |
|
| 2019 |
Kosiol C, Anisimova M. Selection Acting on Genomes. Methods in Molecular Biology (Clifton, N.J.). 1910: 373-397. PMID 31278671 DOI: 10.1007/978-1-4939-9074-0_12 |
0.483 |
|
| 2019 |
Borges R, Szöllősi G, Kosiol C. Quantifying GC-Biased Gene Conversion in Great Ape Genomes Using Polymorphism-Aware Models. Genetics. PMID 31147380 DOI: 10.1534/Genetics.119.302074 |
0.739 |
|
| 2019 |
Rogers J, Raveendran M, Harris RA, Mailund T, Leppälä K, Athanasiadis G, Schierup MH, Cheng J, Munch K, Walker JA, Konkel MK, Jordan V, Steely CJ, Beckstrom TO, Bergey C, ... ... Kosiol C, et al. The comparative genomics and complex population history of baboons. Science Advances. 5: eaau6947. PMID 30854422 DOI: 10.1126/Sciadv.Aau6947 |
0.762 |
|
| 2017 |
Bergman J, Schrempf D, Kosiol C, Vogl C. Inference in population genetics using forward and backward, discrete and continuous time processes. Journal of Theoretical Biology. 439: 166-180. PMID 29229523 DOI: 10.1016/J.Jtbi.2017.12.008 |
0.73 |
|
| 2017 |
Bertl J, Ewing G, Kosiol C, Futschik A. Approximate maximum likelihood estimation for population genetic inference. Statistical Applications in Genetics and Molecular Biology. PMID 29095700 DOI: 10.1515/Sagmb-2017-0016 |
0.393 |
|
| 2017 |
Balao F, Trucchi E, Wolfe T, Hao BH, Lorenzo MT, Baar J, Sedman L, Kosiol C, Amman F, Chase MW, Hedrén M, Paun O. Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima. Molecular Ecology. PMID 28370647 DOI: 10.1111/Mec.14123 |
0.451 |
|
| 2016 |
Jónás A, Taus T, Kosiol C, Schlötterer C, Futschik A. Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution. Genetics. PMID 27542959 DOI: 10.1534/Genetics.116.191197 |
0.662 |
|
| 2016 |
Schrempf D, Minh BQ, Maio N, Haeseler AV, Kosiol C. Reversible polymorphism-aware phylogenetic models and their application to tree inference. Journal of Theoretical Biology. PMID 27480613 DOI: 10.1016/J.Jtbi.2016.07.042 |
0.76 |
|
| 2016 |
Marek A, Kaján GL, Kosiol C, Benkő M, Schachner A, Hess M. Genetic diversity of species Fowl aviadenovirus D and Fowl aviadenovirus E. The Journal of General Virology. PMID 27267884 DOI: 10.1099/Jgv.0.000519 |
0.404 |
|
| 2015 |
De Maio N, Schrempf D, Kosiol C. PoMo: An Allele Frequency-Based Approach for Species Tree Estimation. Systematic Biology. 64: 1018-31. PMID 26209413 DOI: 10.1093/Sysbio/Syv048 |
0.767 |
|
| 2015 |
Topa H, Jónás Á, Kofler R, Kosiol C, Honkela A. Gaussian process test for high-throughput sequencing time series: application to experimental evolution. Bioinformatics (Oxford, England). 31: 1762-70. PMID 25614471 DOI: 10.1093/Bioinformatics/Btv014 |
0.616 |
|
| 2014 |
Marek A, Kaján GL, Kosiol C, Harrach B, Schlötterer C, Hess M. Complete genome sequences of pigeon adenovirus 1 and duck adenovirus 2 extend the number of species within the genus Aviadenovirus. Virology. 462: 107-14. PMID 24971703 DOI: 10.1016/J.Virol.2014.04.033 |
0.444 |
|
| 2014 |
Palmieri N, Kosiol C, Schlötterer C. The life cycle of Drosophila orphan genes. Elife. 3: e01311. PMID 24554240 DOI: 10.7554/Elife.01311 |
0.369 |
|
| 2014 |
Marek A, Ballmann MZ, Kosiol C, Harrach B, Schlötterer C, Hess M. Whole-genome sequences of two turkey adenovirus types reveal the existence of two unknown lineages that merit the establishment of novel species within the genus Aviadenovirus. The Journal of General Virology. 95: 156-70. PMID 24077297 DOI: 10.1099/Vir.0.057711-0 |
0.446 |
|
| 2013 |
Ma X, Kelley JL, Eilertson K, Musharoff S, Degenhardt JD, Martins AL, Vinar T, Kosiol C, Siepel A, Gutenkunst RN, Bustamante CD. Population genomic analysis reveals a rich speciation and demographic history of orang-utans (Pongo pygmaeus and Pongo abelii). Plos One. 8: e77175. PMID 24194868 DOI: 10.1371/Journal.Pone.0077175 |
0.516 |
|
| 2013 |
De Maio N, Schlötterer C, Kosiol C. Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models. Molecular Biology and Evolution. 30: 2249-62. PMID 23906727 DOI: 10.1093/Molbev/Mst131 |
0.553 |
|
| 2013 |
Marek A, Kosiol C, Harrach B, Kaján GL, Schlötterer C, Hess M. The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus. Veterinary Microbiology. 166: 250-6. PMID 23830773 DOI: 10.1016/J.Vetmic.2013.05.017 |
0.43 |
|
| 2013 |
De Maio N, Holmes I, Schlötterer C, Kosiol C. Estimating empirical codon hidden Markov models. Molecular Biology and Evolution. 30: 725-36. PMID 23188590 DOI: 10.1093/Molbev/Mss266 |
0.557 |
|
| 2012 |
Palmieri N, Nolte V, Suvorov A, Kosiol C, Schlötterer C. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Plos One. 7: e46415. PMID 23056304 DOI: 10.1371/Journal.Pone.0046415 |
0.4 |
|
| 2012 |
Kosiol C, Anisimova M. Selection on the protein-coding genome Methods in Molecular Biology. 856: 113-140. PMID 22399457 DOI: 10.1007/978-1-61779-585-5_5 |
0.464 |
|
| 2011 |
Kosiol C, Goldman N. Markovian and non-Markovian protein sequence evolution: aggregated Markov process models. Journal of Molecular Biology. 411: 910-23. PMID 21718704 DOI: 10.1016/J.Jmb.2011.06.005 |
0.608 |
|
| 2011 |
Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, ... ... Kosiol C, et al. Comparative and demographic analysis of orang-utan genomes. Nature. 469: 529-33. PMID 21270892 DOI: 10.1038/Nature09687 |
0.531 |
|
| 2011 |
Kofler R, Orozco-terWengel P, De Maio N, Pandey RV, Nolte V, Futschik A, Kosiol C, Schlötterer C. PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals. Plos One. 6: e15925. PMID 21253599 DOI: 10.1371/Journal.Pone.0015925 |
0.508 |
|
| 2010 |
Janssen R, Le Gouar M, Pechmann M, Poulin F, Bolognesi R, Schwager EE, Hopfen C, Colbourne JK, Budd GE, Brown SJ, Prpic NM, Kosiol C, Vervoort M, Damen WG, Balavoine G, et al. Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation. Bmc Evolutionary Biology. 10: 374. PMID 21122121 DOI: 10.1186/1471-2148-10-374 |
0.304 |
|
| 2010 |
Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, ... ... Kosiol C, et al. The sequence and de novo assembly of the giant panda genome. Nature. 463: 311-7. PMID 20010809 DOI: 10.1038/Nature08696 |
0.465 |
|
| 2010 |
Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, ... ... Kosiol C, et al. Erratum: The sequence and de novo assembly of the giant panda genome Nature. 463: 1106-1106. DOI: 10.1038/Nature08846 |
0.452 |
|
| 2009 |
Anisimova M, Kosiol C. Investigating protein-coding sequence evolution with probabilistic codon substitution models Molecular Biology and Evolution. 26: 255-271. PMID 18922761 DOI: 10.1093/Molbev/Msn232 |
0.498 |
|
| 2008 |
Kosiol C, Vinař T, Da Fonseca RR, Hubisz MJ, Bustamante CD, Nielsen R, Siepel A. Patterns of positive selection in six mammalian genomes Plos Genetics. 4. PMID 18670650 DOI: 10.1371/Journal.Pgen.1000144 |
0.46 |
|
| 2008 |
Blekhman R, Man O, Herrmann L, Boyko AR, Indap A, Kosiol C, Bustamante CD, Teshima KM, Przeworski M. Natural selection on genes that underlie human disease susceptibility. Current Biology : Cb. 18: 883-9. PMID 18571414 DOI: 10.1016/J.Cub.2008.04.074 |
0.331 |
|
| 2007 |
Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, Remington KA, Strausberg RL, Venter JC, Wilson RK, Batzer MA, Bustamante CD, Eichler EE, Hahn MW, ... ... Kosiol C, et al. Evolutionary and biomedical insights from the rhesus macaque genome. Science (New York, N.Y.). 316: 222-34. PMID 17431167 DOI: 10.1126/Science.1139247 |
0.501 |
|
| 2007 |
Kosiol C, Holmes I, Goldman N. An empirical codon model for protein sequence evolution. Molecular Biology and Evolution. 24: 1464-79. PMID 17400572 DOI: 10.1093/Molbev/Msm064 |
0.627 |
|
| 2006 |
Klosterman PS, Uzilov AV, Bendaña YR, Bradley RK, Chao S, Kosiol C, Goldman N, Holmes I. XRate: a fast prototyping, training and annotation tool for phylo-grammars. Bmc Bioinformatics. 7: 428. PMID 17018148 DOI: 10.1186/1471-2105-7-428 |
0.618 |
|
| 2006 |
Kosiol C, Bofkin L, Whelan S. Phylogenetics by likelihood: Evolutionary modeling as a tool for understanding the genome Journal of Biomedical Informatics. 39: 51-61. PMID 16226061 DOI: 10.1016/J.Jbi.2005.08.003 |
0.698 |
|
| 2005 |
Kosiol C, Goldman N. Different versions of the Dayhoff rate matrix. Molecular Biology and Evolution. 22: 193-9. PMID 15483331 DOI: 10.1093/Molbev/Msi005 |
0.558 |
|
| 2004 |
Kosiol C, Goldman N, Buttimore NH. A new criterion and method for amino acid classification. Journal of Theoretical Biology. 228: 97-106. PMID 15064085 DOI: 10.1016/J.Jtbi.2003.12.010 |
0.562 |
|
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