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Tobias Warnecke - Publications

Affiliations: 
Imperial College, London, London, England, United Kingdom 
Area:
Molecular evolution
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Hocher A, Laursen SP, Radford P, Tyson J, Lambert C, Stevens KM, Montoya A, Shliaha PV, Picardeau M, Sockett RE, Luger K, Warnecke T. Histones with an unconventional DNA-binding mode in vitro are major chromatin constituents in the bacterium Bdellovibrio bacteriovorus. Nature Microbiology. 8: 2006-2019. PMID 37814071 DOI: 10.1038/s41564-023-01492-x  0.738
2022 Hocher A, Borrel G, Fadhlaoui K, Brugère JF, Gribaldo S, Warnecke T. Growth temperature and chromatinization in archaea. Nature Microbiology. 7: 1932-1942. PMID 36266339 DOI: 10.1038/s41564-022-01245-2  0.412
2022 Stevens KM, Warnecke T. Histone variants in archaea - An undiscovered country. Seminars in Cell & Developmental Biology. PMID 35221208 DOI: 10.1016/j.semcdb.2022.02.016  0.71
2021 Stevens KM, Hocher A, Warnecke T. Deep conservation of histone variants in Thermococcales archaea. Genome Biology and Evolution. PMID 34894218 DOI: 10.1093/gbe/evab274  0.743
2021 Soo VWC, Warnecke T. Slaying the last unicorn: discovery of histones in the microalga . Royal Society Open Science. 8: 202023. PMID 33972876 DOI: 10.1098/rsos.202023  0.466
2020 Stevens KM, Swadling JB, Hocher A, Bang C, Gribaldo S, Schmitz RA, Warnecke T. Histone variants in archaea and the evolution of combinatorial chromatin complexity. Proceedings of the National Academy of Sciences of the United States of America. PMID 33288720 DOI: 10.1073/pnas.2007056117  0.725
2020 Kusmartsev V, Drożdż M, Schuster-Böckler B, Warnecke T. Cytosine Methylation Affects the Mutability of Neighbouring Nucleotides in Germline and Soma. Genetics. PMID 32079595 DOI: 10.1534/Genetics.120.303028  0.693
2019 Hocher A, Rojec M, Swadling JB, Esin A, Warnecke T. The DNA-binding protein HTa from is an archaeal histone analog. Elife. 8. PMID 31710291 DOI: 10.7554/Elife.52542  0.744
2019 Rojec M, Hocher A, Stevens KM, Merkenschlager M, Warnecke T. Chromatinization of with archaeal histones. Elife. 8. PMID 31692448 DOI: 10.7554/Elife.49038  0.776
2019 Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, ... ... Warnecke T, et al. EvoChromo: towards a synthesis of chromatin biology and evolution. Development (Cambridge, England). 146. PMID 31558570 DOI: 10.1242/Dev.178962  0.389
2019 Hocher A, Rojec M, Swadling JB, Esin A, Warnecke T. Author response: The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog Elife. DOI: 10.7554/Elife.52542.Sa2  0.724
2019 Rojec M, Hocher A, Stevens KM, Merkenschlager M, Warnecke T. Author response: Chromatinization of Escherichia coli with archaeal histones Elife. DOI: 10.7554/Elife.49038.040  0.774
2018 Esin A, Bergendahl LT, Savolainen V, Marsh JA, Warnecke T. The genetic basis and evolution of red blood cell sickling in deer. Nature Ecology & Evolution. 2: 367-376. PMID 29255300 DOI: 10.1038/S41559-017-0420-3  0.732
2017 Repar J, Warnecke T. Non-Random Inversion Landscapes in Prokaryotic Genomes Are Shaped by Heterogeneous Selection Pressures. Molecular Biology and Evolution. 34: 1902-1911. PMID 28407093 DOI: 10.1093/Molbev/Msx127  0.305
2017 Repar J, Supek F, Klanjscek T, Warnecke T, Zahradka K, Zahradka D. Elevated Rate of Genome Rearrangements in Radiation-Resistant Bacteria. Genetics. 205: 1677-1689. PMID 28188144 DOI: 10.1534/Genetics.116.196154  0.319
2017 Borgel J, Tyl M, Schiller K, Pusztai Z, Dooley CM, Deng W, Wooding C, White RJ, Warnecke T, Leonhardt H, Busch-Nentwich EM, Bartke T. KDM2A integrates DNA and histone modification signals through a CXXC/PHD module and direct interaction with HP1. Nucleic Acids Research. 45: 1114-1129. PMID 28180290 DOI: 10.1093/Nar/Gkw979  0.57
2015 Brbić M, Warnecke T, Kriško A, Supek F. Global Shifts in Genome and Proteome Composition Are Very Tightly Coupled. Genome Biology and Evolution. 7: 1519-32. PMID 25971281 DOI: 10.1093/Gbe/Evv088  0.356
2014 Supek F, Lehner B, Hajkova P, Warnecke T. Hydroxymethylated cytosines are associated with elevated C to G transversion rates. Plos Genetics. 10: e1004585. PMID 25211471 DOI: 10.1371/Journal.Pgen.1004585  0.379
2013 Warnecke T, Becker EA, Facciotti MT, Nislow C, Lehner B. Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution. Plos Computational Biology. 9: e1003373. PMID 24278010 DOI: 10.1371/Journal.Pcbi.1003373  0.539
2013 Woods S, Coghlan A, Rivers D, Warnecke T, Jeffries SJ, Kwon T, Rogers A, Hurst LD, Ahringer J. Duplication and retention biases of essential and non-essential genes revealed by systematic knockdown analyses. Plos Genetics. 9: e1003330. PMID 23675306 DOI: 10.1371/Journal.Pgen.1003330  0.501
2012 Warnecke T, Supek F, Lehner B. Nucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific manner. Plos Computational Biology. 8: e1002846. PMID 23284284 DOI: 10.1371/Journal.Pcbi.1002846  0.43
2012 Warnecke T. Loss of the DnaK-DnaJ-GrpE chaperone system among the Aquificales. Molecular Biology and Evolution. 29: 3485-95. PMID 22683810 DOI: 10.1093/Molbev/Mss152  0.33
2011 Warnecke T, Hurst LD. Error prevention and mitigation as forces in the evolution of genes and genomes. Nature Reviews. Genetics. 12: 875-81. PMID 22094950 DOI: 10.1038/Nrg3092  0.503
2010 Warnecke T, Huang Y, Przytycka TM, Hurst LD. Unique cost dynamics elucidate the role of frameshifting errors in promoting translational robustness. Genome Biology and Evolution. 2: 636-45. PMID 20688751 DOI: 10.1093/Gbe/Evq049  0.488
2010 Warnecke T, Hurst LD. GroEL dependency affects codon usage--support for a critical role of misfolding in gene evolution. Molecular Systems Biology. 6: 340. PMID 20087338 DOI: 10.1038/Msb.2009.94  0.516
2009 Warnecke T, Wang GZ, Lercher MJ, Hurst LD. Does negative auto-regulation increase gene duplicability? Bmc Evolutionary Biology. 9: 193. PMID 19664220 DOI: 10.1186/1471-2148-9-193  0.527
2009 Warnecke T, Weber CC, Hurst LD. Why there is more to protein evolution than protein function: splicing, nucleosomes and dual-coding sequence. Biochemical Society Transactions. 37: 756-61. PMID 19614589 DOI: 10.1042/Bst0370756  0.666
2008 Warnecke T, Batada NN, Hurst LD. The impact of the nucleosome code on protein-coding sequence evolution in yeast. Plos Genetics. 4: e1000250. PMID 18989456 DOI: 10.1371/Journal.Pgen.1000250  0.599
2008 Warnecke T, Parmley JL, Hurst LD. Finding exonic islands in a sea of non-coding sequence: splicing related constraints on protein composition and evolution are common in intron-rich genomes. Genome Biology. 9: R29. PMID 18257921 DOI: 10.1186/Gb-2008-9-2-R29  0.507
2007 Warnecke T, Hurst LD. Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster. Molecular Biology and Evolution. 24: 2755-62. PMID 17905999 DOI: 10.1093/Molbev/Msm210  0.503
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