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John McCutcheon, PhD - Publications

Affiliations: 
Biology University of Miami, Coral Gables, FL 
Area:
Symbiosis
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Garber AI, Garcia de la Filia Molina A, Vea I, Mongue AJ, Ross L, McCutcheon JP. Retention of an endosymbiont for the production of a single molecule. Genome Biology and Evolution. PMID 38577764 DOI: 10.1093/gbe/evae075  0.495
2023 Spencer N, Łukasik P, Meyer M, Veloso C, McCutcheon JP. No Transcriptional Compensation for Extreme Gene Dosage Imbalance in Fragmented Bacterial Endosymbionts of Cicadas. Genome Biology and Evolution. PMID 37267326 DOI: 10.1093/gbe/evad100  0.616
2022 Syberg-Olsen MJ, Garber AI, Keeling PJ, McCutcheon JP, Husnik F. Pseudofinder: detection of pseudogenes in prokaryotic genomes. Molecular Biology and Evolution. PMID 35801562 DOI: 10.1093/molbev/msac153  0.809
2022 Resl P, Bujold AR, Tagirdzhanova G, Meidl P, Freire Rallo S, Kono M, Fernández-Brime S, Guðmundsson H, Andrésson ÓS, Muggia L, Mayrhofer H, McCutcheon JP, Wedin M, Werth S, Willis LM, et al. Large differences in carbohydrate degradation and transport potential among lichen fungal symbionts. Nature Communications. 13: 2634. PMID 35551185 DOI: 10.1038/s41467-022-30218-6  0.338
2021 McCutcheon JP. The Genomics and Cell Biology of Host-Beneficial Intracellular Infections. Annual Review of Cell and Developmental Biology. PMID 34242059 DOI: 10.1146/annurev-cellbio-120219-024122  0.379
2021 Garber AI, Kupper M, Laetsch DR, Weldon SR, Ladinsky MS, Bjorkman PJ, McCutcheon JP. The evolution of interdependence in a four-way mealybug symbiosis. Genome Biology and Evolution. PMID 34061185 DOI: 10.1093/gbe/evab123  0.615
2021 Milhaven M, Hastings E, Brister D, Cevallos L, Chilukuri S, Diyya A, Garg A, Hernandez R, Kelly D, Lazo K, Le J, Maag G, Marfatia PD, Mehta R, Nejad A, ... ... McCutcheon JP, et al. Complete Genome Sequence of Bacteriophage Erla. Microbiology Resource Announcements. 10. PMID 33479002 DOI: 10.1128/MRA.01354-20  0.521
2019 Bublitz DC, Chadwick GL, Magyar JS, Sandoz KM, Brooks DM, Mesnage S, Ladinsky MS, Garber AI, Bjorkman PJ, Orphan VJ, McCutcheon JP. Peptidoglycan Production by an Insect-Bacterial Mosaic. Cell. PMID 31587897 DOI: 10.1016/J.Cell.2019.08.054  0.578
2019 Van Leuven JT, Mao M, Xing DD, Bennett GM, McCutcheon JP. Cicada Endosymbionts Have tRNAs That Are Correctly Processed Despite Having Genomes That Do Not Encode All of the tRNA Processing Machinery. Mbio. 10. PMID 31213566 DOI: 10.1128/Mbio.01950-18  0.748
2019 McCutcheon JP, Boyd BM, Dale C. The Life of an Insect Endosymbiont from the Cradle to the Grave. Current Biology : Cb. 29: R485-R495. PMID 31163163 DOI: 10.1016/J.Cub.2019.03.032  0.515
2019 Simon C, Gordon ERL, Moulds MS, Cole JA, Haji D, Lemmon AR, Lemmon EM, Kortyna M, Nazario K, Wade EJ, Meister RC, Goemans G, Chiswell SM, Pessacq P, Veloso C, ... McCutcheon JP, et al. Off-target capture data, endosymbiont genes and morphology reveal a relict lineage that is sister to all other singing cicadas Biological Journal of the Linnean Society. 128: 865-886. DOI: 10.1093/Biolinnean/Blz120  0.357
2018 Lukasik P, Chong RA, Nazario K, Matsuura Y, Bublitz D, Campbell MA, Meyer M, Van Leuven JT, Pessacq P, Veloso C, Simon C, McCutcheon JP. One hundred mitochondrial genomes of cicadas. The Journal of Heredity. PMID 30590568 DOI: 10.1093/Jhered/Esy068  0.485
2018 Campbell MA, Łukasik P, Meyer MC, Buckner M, Simon C, Veloso C, Michalik A, McCutcheon JP. Changes in Endosymbiont Complexity Drive Host-Level Compensatory Adaptations in Cicadas. Mbio. 9. PMID 30425149 DOI: 10.1128/Mbio.02104-18  0.313
2018 Matsuura Y, Moriyama M, Łukasik P, Vanderpool D, Tanahashi M, Meng XY, McCutcheon JP, Fukatsu T. Recurrent symbiont recruitment from fungal parasites in cicadas. Proceedings of the National Academy of Sciences of the United States of America. PMID 29891654 DOI: 10.1073/pnas.1803245115  0.531
2017 Łukasik P, Nazario K, Van Leuven JT, Campbell MA, Meyer M, Michalik A, Pessacq P, Simon C, Veloso C, McCutcheon JP. Multiple origins of interdependent endosymbiotic complexes in a genus of cicadas. Proceedings of the National Academy of Sciences of the United States of America. PMID 29279407 DOI: 10.1073/Pnas.1712321115  0.587
2017 Husnik F, McCutcheon JP. Functional horizontal gene transfer from bacteria to eukaryotes. Nature Reviews. Microbiology. PMID 29176581 DOI: 10.1038/nrmicro.2017.137  0.731
2017 Campbell MA, Łukasik P, Simon C, McCutcheon JP. Idiosyncratic Genome Degradation in a Bacterial Endosymbiont of Periodical Cicadas. Current Biology : Cb. PMID 29129532 DOI: 10.1016/J.Cub.2017.10.008  0.565
2017 Keeling PJ, McCutcheon JP. Endosymbiosis: the feeling is not mutual. Journal of Theoretical Biology. PMID 28624393 DOI: 10.1016/J.Jtbi.2017.06.008  0.588
2016 Husnik F, McCutcheon JP. Repeated replacement of an intrabacterial symbiont in the tripartite nested mealybug symbiosis. Proceedings of the National Academy of Sciences of the United States of America. PMID 27573819 DOI: 10.1073/pnas.1603910113  0.803
2016 McCutcheon JP. From microbiology to cell biology: when an intracellular bacterium becomes part of its host cell. Current Opinion in Cell Biology. 41: 132-136. PMID 27267617 DOI: 10.1016/j.ceb.2016.05.008  0.405
2016 Reimund KK, Coscia BJ, Arena JT, Wilson AD, McCutcheon JR. Characterization and membrane stability study for the switchable polarity solvent N,N-dimethylcyclohexylamine as a draw solute in forward osmosis Journal of Membrane Science. 501: 93-99. DOI: 10.1016/J.Memsci.2015.10.039  0.375
2015 Campbell MA, Van Leuven JT, Meister RC, Carey KM, Simon C, McCutcheon JP. Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia. Proceedings of the National Academy of Sciences of the United States of America. 112: 10192-9. PMID 26286984 DOI: 10.1073/Pnas.1421386112  0.578
2015 Keeling PJ, McCutcheon JP, Doolittle WF. Symbiosis becoming permanent: Survival of the luckiest. Proceedings of the National Academy of Sciences of the United States of America. 112: 10101-3. PMID 26283342 DOI: 10.1073/Pnas.1513346112  0.442
2015 Bennett GM, McCutcheon JP, Mcdonald BR, Moran NA. Lineage-specific patterns of genome deterioration in obligate symbionts of sharpshooter leafhoppers. Genome Biology and Evolution. PMID 26260652 DOI: 10.1093/Gbe/Evv159  0.789
2015 Reimund KK, McCutcheon JR, Wilson AD. Thermodynamic analysis of energy density in pressure retarded osmosis: The impact of solution volumes and costs Journal of Membrane Science. 487: 240-248. DOI: 10.1016/J.Memsci.2015.03.076  0.376
2014 Bennett GM, McCutcheon JP, MacDonald BR, Romanovicz D, Moran NA. Differential genome evolution between companion symbionts in an insect-bacterial symbiosis. Mbio. 5: e01697-14. PMID 25271287 DOI: 10.1128/Mbio.01697-14  0.78
2014 Van Leuven JT, Meister RC, Simon C, McCutcheon JP. Sympatric speciation in a bacterial endosymbiont results in two genomes with the functionality of one. Cell. 158: 1270-80. PMID 25175626 DOI: 10.1016/j.cell.2014.07.047  0.55
2014 McCutcheon JP, Keeling PJ. Endosymbiosis: protein targeting further erodes the organelle/symbiont distinction. Current Biology : Cb. 24: R654-5. PMID 25050964 DOI: 10.1016/J.Cub.2014.05.073  0.482
2014 Bodian DL, McCutcheon JN, Kothiyal P, Huddleston KC, Iyer RK, Vockley JG, Niederhuber JE. Germline variation in cancer-susceptibility genes in a healthy, ancestrally diverse cohort: implications for individual genome sequencing. Plos One. 9: e94554. PMID 24728327 DOI: 10.1371/journal.pone.0094554  0.388
2014 Duncan RP, Husnik F, Van Leuven JT, Gilbert DG, Dávalos LM, McCutcheon JP, Wilson AC. Dynamic recruitment of amino acid transporters to the insect/symbiont interface. Molecular Ecology. 23: 1608-23. PMID 24528556 DOI: 10.1111/Mec.12627  0.79
2014 Brown AM, Huynh LY, Bolender CM, Nelson KG, McCutcheon JP. Population genomics of a symbiont in the early stages of a pest invasion. Molecular Ecology. 23: 1516-30. PMID 23841878 DOI: 10.1111/Mec.12366  0.404
2013 McCutcheon JP. Genome evolution: a bacterium with a Napoleon complex. Current Biology : Cb. 23: R657-9. PMID 23928084 DOI: 10.1016/j.cub.2013.06.037  0.557
2013 Husnik F, Nikoh N, Koga R, Ross L, Duncan RP, Fujie M, Tanaka M, Satoh N, Bachtrog D, Wilson AC, von Dohlen CD, Fukatsu T, McCutcheon JP. Horizontal gene transfer from diverse bacteria to an insect genome enables a tripartite nested mealybug symbiosis. Cell. 153: 1567-78. PMID 23791183 DOI: 10.1016/J.Cell.2013.05.040  0.804
2012 Van Leuven JT, McCutcheon JP. An AT mutational bias in the tiny GC-rich endosymbiont genome of Hodgkinia. Genome Biology and Evolution. 4: 24-7. PMID 22113795 DOI: 10.1093/gbe/evr125  0.506
2012 McCutcheon JP, Moran NA. Extreme genome reduction in symbiotic bacteria. Nature Reviews. Microbiology. 10: 13-26. PMID 22064560 DOI: 10.1038/Nrmicro2670  0.739
2011 McCutcheon JP, von Dohlen CD. An interdependent metabolic patchwork in the nested symbiosis of mealybugs. Current Biology : Cb. 21: 1366-72. PMID 21835622 DOI: 10.1016/j.cub.2011.06.051  0.782
2010 McCutcheon JP, Moran NA. Functional convergence in reduced genomes of bacterial symbionts spanning 200 My of evolution. Genome Biology and Evolution. 2: 708-18. PMID 20829280 DOI: 10.1093/Gbe/Evq055  0.743
2010 Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF. One bacterial cell, one complete genome. Plos One. 5: e10314. PMID 20428247 DOI: 10.1371/Journal.Pone.0010314  0.679
2010 Nikoh N, McCutcheon JP, Kudo T, Miyagishima SY, Moran NA, Nakabachi A. Bacterial genes in the aphid genome: absence of functional gene transfer from Buchnera to its host. Plos Genetics. 6: e1000827. PMID 20195500 DOI: 10.1371/Journal.Pgen.1000827  0.726
2010 McCutcheon JP. The bacterial essence of tiny symbiont genomes. Current Opinion in Microbiology. 13: 73-8. PMID 20044299 DOI: 10.1016/j.mib.2009.12.002  0.595
2010 Richards S, Gibbs RA, Gerardo NM, Moran N, Nakabachi A, Stern D, Tagu D, Wilson ACC, Muzny D, Kovar C, Cree A, Chacko J, Chandrabose MN, Dao MD, Dinh HH, ... ... McCutcheon JP, et al. Genome sequence of the pea aphid Acyrthosiphon pisum Plos Biology. 8. DOI: 10.1371/journal.pbio.1000313  0.765
2009 McCutcheon JP, McDonald BR, Moran NA. Convergent evolution of metabolic roles in bacterial co-symbionts of insects. Proceedings of the National Academy of Sciences of the United States of America. 106: 15394-9. PMID 19706397 DOI: 10.1073/Pnas.0906424106  0.707
2009 McCutcheon JP, McDonald BR, Moran NA. Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont. Plos Genetics. 5: e1000565. PMID 19609354 DOI: 10.1371/Journal.Pgen.1000565  0.698
2008 Moran NA, McCutcheon JP, Nakabachi A. Genomics and evolution of heritable bacterial symbionts. Annual Review of Genetics. 42: 165-90. PMID 18983256 DOI: 10.1146/Annurev.Genet.41.110306.130119  0.626
2007 McCutcheon JP, Moran NA. Parallel genomic evolution and metabolic interdependence in an ancient symbiosis. Proceedings of the National Academy of Sciences of the United States of America. 104: 19392-7. PMID 18048332 DOI: 10.1073/Pnas.0708855104  0.711
2003 McCutcheon JP, Eddy SR. Computational identification of non-coding RNAs in Saccharomyces cerevisiae by comparative genomics. Nucleic Acids Research. 31: 4119-28. PMID 12853629 DOI: 10.1093/nar/gkg438  0.399
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