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Christian I. Hong - Publications

Affiliations: 
University of Cincinnati, Cincinnati, OH 
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46 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Chakravarty S, Hong CI, Csikász-Nagy A. Systematic analysis of negative and positive feedback loops for robustness and temperature compensation in circadian rhythms. Npj Systems Biology and Applications. 9: 5. PMID 36774353 DOI: 10.1038/s41540-023-00268-7  0.718
2022 Fawad JA, Luzader DH, Hanson GF, Moutinho TJ, McKinney CA, Mitchell PG, Brown-Steinke K, Kumar A, Park M, Lee S, Bolick DT, Medlock GL, Zhao JY, Rosselot AE, Chou CJ, ... ... Hong CI, et al. Histone deacetylase inhibition by gut microbe-generated short chain fatty acids entrains intestinal epithelial circadian rhythms. Gastroenterology. PMID 35934064 DOI: 10.1053/j.gastro.2022.07.051  0.349
2022 Park M, Cao Y, Hong CI. Methods for Assessing Circadian Rhythms and Cell Cycle in Intestinal Enteroids. Methods in Molecular Biology (Clifton, N.J.). 2482: 105-124. PMID 35610422 DOI: 10.1007/978-1-0716-2249-0_7  0.527
2022 Lee S, Hong CI. Organoids as Model Systems to Investigate Circadian Clock-Related Diseases and Treatments. Frontiers in Genetics. 13: 874288. PMID 35559029 DOI: 10.3389/fgene.2022.874288  0.514
2021 Rosselot AE, Park M, Kim M, Matsu-Ura T, Wu G, Flores DE, Subramanian KR, Lee S, Sundaram N, Broda TR, McCauley HA, Hawkins JA, Chetal K, Salomonis N, Shroyer NF, ... ... Hong CI, et al. Ontogeny and function of the circadian clock in intestinal organoids. The Embo Journal. e106973. PMID 34704277 DOI: 10.15252/embj.2020106973  0.42
2020 Liu X, Chen A, Caicedo-Casso A, Cui G, Du M, He Q, Lim S, Kim HJ, Hong CI, Liu Y. Author Correction: FRQ-CK1 interaction determines the period of circadian rhythms in Neurospora. Nature Communications. 11: 346. PMID 31937790 DOI: 10.1038/S41467-019-13862-3  0.415
2019 Liu X, Chen A, Caicedo-Casso A, Cui G, Du M, He Q, Lim S, Kim HJ, Hong CI, Liu Y. FRQ-CK1 interaction determines the period of circadian rhythms in Neurospora. Nature Communications. 10: 4352. PMID 31554810 DOI: 10.1038/S41467-019-12239-W  0.577
2019 Baek M, Virgilio S, Lamb TM, Ibarra O, Andrade JM, Gonçalves RD, Dovzhenok A, Lim S, Bell-Pedersen D, Bertolini MC, Hong CI. Circadian clock regulation of the glycogen synthase () gene by WCC is critical for rhythmic glycogen metabolism in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31048503 DOI: 10.1073/Pnas.1815360116  0.531
2019 Fawad JA, Luzader D, Moutinho TJ, Mitchell P, Brown-Steinke K, Zhao JY, Hong C, Papin J, Moore SR. 154 – Gut Microbe-Produced Short Chain Fatty Acids Entrain Circadian Rhythms in Murine Enteroids by Histone Deacetylase Inhibition Gastroenterology. 156: S-36. DOI: 10.1016/S0016-5085(19)36867-2  0.34
2018 Ballweg R, Lee S, Han X, Maini PK, Byrne H, Hong CI, Zhang T. Unraveling the Control of Cell Cycle Periods during Intestinal Stem Cell Differentiation. Biophysical Journal. PMID 30467024 DOI: 10.1016/J.Bpj.2018.10.025  0.756
2018 Bellman J, Kim JK, Lim S, Hong CI. Modeling Reveals a Key Mechanism for Light-Dependent Phase Shifts of Neurospora Circadian Rhythms. Biophysical Journal. PMID 30139524 DOI: 10.1016/J.Bpj.2018.07.029  0.549
2018 Matsu-Ura T, Dovzhenok AA, Coradetti ST, Subramanian KR, Meyer DR, Kwon JJ, Kim C, Salomonis N, Glass NL, Lim S, Hong CI. Synthetic gene network with positive feedback loop amplifies cellulase gene expression in Neurospora crassa. Acs Synthetic Biology. PMID 29625007 DOI: 10.1021/Acssynbio.8B00011  0.313
2018 Hoffman CL, Luzader D, Hong C, Moore S. 761 - Circadian Rhythms of Intestinal Epithelial Cell Susceptibility to Clostridium Difficile Toxin B and Escherichia Coli Shiga Toxin 2 Gastroenterology. 154: S-161. DOI: 10.1016/S0016-5085(18)30951-X  0.375
2018 Luzader D, Moutinho TJ, Mitchell P, Papin J, Hong C, Moore S. 274 - Gut Microbial Metabolites Modulate the Amplitude and Phase of PER2 and BMAL1 Circadian Rhythms in Intestinal Epithelial Cells and Organoids Gastroenterology. 154: S-67. DOI: 10.1016/S0016-5085(18)30681-4  0.488
2017 Matsu-Ura T, Moore SR, Hong CI. WNT Takes Two to Tango: Molecular Links between the Circadian Clock and the Cell Cycle in Adult Stem Cells. Journal of Biological Rhythms. 748730417745913. PMID 29277155 DOI: 10.1177/0748730417745913  0.582
2017 Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Hong C, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663  0.702
2017 Liu X, Dang Y, Matsu-Ura T, He Y, He Q, Hong CI, Liu Y. DNA Replication Is Required for Circadian Clock Function by Regulating Rhythmic Nucleosome Composition. Molecular Cell. PMID 28648778 DOI: 10.1016/J.Molcel.2017.05.029  0.533
2016 Matsu-Ura T, Dovzhenok A, Aihara E, Rood J, Le H, Ren Y, Rosselot AE, Zhang T, Lee C, Obrietan K, Montrose MH, Lim S, Moore SR, Hong CI. Intercellular Coupling of the Cell Cycle and Circadian Clock in Adult Stem Cell Culture. Molecular Cell. PMID 27867006 DOI: 10.1016/J.Molcel.2016.10.015  0.804
2016 Lee KK, Labiscsak L, Ahn CH, Hong CI. Spiral-based microfluidic device for long-term time course imaging of Neurospora crassa with single nucleus resolution. Fungal Genetics and Biology : Fg & B. PMID 27345439 DOI: 10.1016/J.Fgb.2016.06.004  0.332
2016 Ren Y, Hong CI, Lim S, Song S. Finding Clocks in Genes: A Bayesian Approach to Estimate Periodicity. Biomed Research International. 2016: 3017475. PMID 27340654 DOI: 10.1155/2016/3017475  0.473
2016 Caicedo-Casso A, Kang HW, Lim S, Hong CI. Corrigendum: Robustness and period sensitivity analysis of minimal models for biochemical oscillators. Scientific Reports. 6: 18504. PMID 26753526 DOI: 10.1038/Srep18504  0.435
2016 Rosselot AE, Hong CI, Moore SR. Rhythm and bugs: circadian clocks, gut microbiota, and enteric infections. Current Opinion in Gastroenterology. 32: 7-11. PMID 26628099 DOI: 10.1097/Mog.0000000000000227  0.427
2016 Matsu-ura T, Dovzhenok A, Lim S, Hong CI. Development of Synthetic Gene Circuits to Amplify the Production of Biomaterials, Cellulases, and Lentivirus Biophysical Journal. 110: 317a. DOI: 10.1016/J.Bpj.2015.11.1702  0.336
2015 Aihara E, Mahe MM, Schumacher MA, Matthis AL, Feng R, Ren W, Noah TK, Matsu-Ura T, Moore SR, Hong CI, Zavros Y, Herness S, Shroyer NF, Iwatsuki K, Jiang P, et al. Characterization of stem/progenitor cell cycle using murine circumvallate papilla taste bud organoid. Scientific Reports. 5: 17185. PMID 26597788 DOI: 10.1038/Srep17185  0.386
2015 Chen S, Brunskill EW, Potter SS, Dexheimer PJ, Salomonis N, Aronow BJ, Hong CI, Zhang T, Kopan R. Intrinsic Age-Dependent Changes and Cell-Cell Contacts Regulate Nephron Progenitor Lifespan. Developmental Cell. 35: 49-62. PMID 26460946 DOI: 10.1016/J.Devcel.2015.09.009  0.673
2015 Caicedo-Casso A, Kang HW, Lim S, Hong CI. Robustness and period sensitivity analysis of minimal models for biochemical oscillators. Scientific Reports. 5: 13161. PMID 26267886 DOI: 10.1038/Srep13161  0.435
2015 Cockrell AL, Pirlo RK, Babson DM, Cusick KD, Soto CM, Petersen ER, Davis MJ, Hong CI, Lee K, Fitzgerald LA, Biffinger JC. Suppressing the Neurospora crassa circadian clock while maintaining light responsiveness in continuous stirred tank reactors. Scientific Reports. 5: 10691. PMID 26031221 DOI: 10.1038/Srep10691  0.579
2015 Dovzhenok AA, Baek M, Lim S, Hong CI. Mathematical modeling and validation of glucose compensation of the neurospora circadian clock. Biophysical Journal. 108: 1830-9. PMID 25863073 DOI: 10.1016/J.Bpj.2015.01.043  0.502
2015 Matsu-ura T, Pruszka J, Aihara E, Dovzhenok AA, Montrose MH, Lim S, Moore SR, Hong C. 799 Robust Coupling of Cell Cycle and Circadian Rhythms in Mouse Enteroids Gastroenterology. 148: S-157. DOI: 10.1016/S0016-5085(15)30528-X  0.6
2014 Zámborszky J, Csikász-Nagy A, Hong CI. Neurospora crassa as a model organism to explore the interconnected network of the cell cycle and the circadian clock. Fungal Genetics and Biology : Fg & B. 71: 52-7. PMID 25239547 DOI: 10.1016/J.Fgb.2014.08.014  0.813
2014 Moore SR, Pruszka J, Vallance J, Aihara E, Matsuura T, Montrose MH, Shroyer NF, Hong CI. Robust circadian rhythms in organoid cultures from PERIOD2::LUCIFERASE mouse small intestine. Disease Models & Mechanisms. 7: 1123-30. PMID 24997189 DOI: 10.1242/Dmm.014399  0.576
2014 Hong CI, Zámborszky J, Baek M, Labiscsak L, Ju K, Lee H, Larrondo LF, Goity A, Chong HS, Belden WJ, Csikász-Nagy A. Circadian rhythms synchronize mitosis in Neurospora crassa. Proceedings of the National Academy of Sciences of the United States of America. 111: 1397-402. PMID 24474764 DOI: 10.1073/Pnas.1319399111  0.805
2014 Xing J, Mather W, Hong C. Computational cell biology: past, present and future Interface Focus. 4: 20140027. DOI: 10.1098/Rsfs.2014.0027  0.514
2014 Moore SR, Pruszka J, Shroyer NF, Hong C. 140 Enteroids Derived From PERIOD2: LUCIFERASE Mice Autonomously Synchronize Circadian Rhythms Through a Steroid-Dependent Mechanism Gastroenterology. 146: S-39. DOI: 10.1016/S0016-5085(14)60135-9  0.577
2013 Lee KK, Ahn CH, Hong CI. Circadian rhythms in Neurospora crassa on a polydimethylsiloxane microfluidic device for real-time gas perturbations. Biomicrofluidics. 7: 44129. PMID 24404062 DOI: 10.1063/1.4819478  0.356
2013 Moore SR, Pruszka J, Vallance J, Shroyer NF, Hong C. 696 Small Intestine Explants and Enteroids Derived From Period2::Luciferase Mice Show Robust Circadian Rhythms Gastroenterology. 144: S-129. DOI: 10.1016/S0016-5085(13)60463-1  0.396
2009 Hong CI, Zámborszky J, Csikász-Nagy A. Minimum criteria for DNA damage-induced phase advances in circadian rhythms. Plos Computational Biology. 5: e1000384. PMID 19424508 DOI: 10.1371/Journal.Pcbi.1000384  0.809
2008 Tyson JJ, Hong CI, Thron CD, Novak B. A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM. Biophysical Journal. 77: 2411-7. PMID 20540926 DOI: 10.1016/S0006-3495(99)77078-5  0.635
2008 Hong CI, Ruoff P, Loros JJ, Dunlap JC. Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus. Genes & Development. 22: 3196-204. PMID 18997062 DOI: 10.1101/Gad.1706908  0.63
2008 Hong CI, Jolma IW, Loros JJ, Dunlap JC, Ruoff P. Simulating dark expressions and interactions of frq and wc-1 in the Neurospora circadian clock. Biophysical Journal. 94: 1221-32. PMID 17965132 DOI: 10.1529/Biophysj.107.115154  0.672
2007 Dunlap JC, Loros JJ, Colot HV, Mehra A, Belden WJ, Shi M, Hong CI, Larrondo LF, Baker CL, Chen CH, Schwerdtfeger C, Collopy PD, Gamsby JJ, Lambreghts R. A circadian clock in Neurospora: how genes and proteins cooperate to produce a sustained, entrainable, and compensated biological oscillator with a period of about a day. Cold Spring Harbor Symposia On Quantitative Biology. 72: 57-68. PMID 18522516 DOI: 10.1101/Sqb.2007.72.072  0.751
2007 Loros JJ, Dunlap JC, Larrondo LF, Shi M, Belden WJ, Gooch VD, Chen CH, Baker CL, Mehra A, Colot HV, Schwerdtfeger C, Lambreghts R, Collopy PD, Gamsby JJ, Hong CI. Circadian output, input, and intracellular oscillators: insights into the circadian systems of single cells. Cold Spring Harbor Symposia On Quantitative Biology. 72: 201-14. PMID 18419278 DOI: 10.1101/Sqb.2007.72.067  0.753
2007 Zámborszky J, Hong CI, Csikász Nagy A. Computational analysis of mammalian cell division gated by a circadian clock: quantized cell cycles and cell size control. Journal of Biological Rhythms. 22: 542-53. PMID 18057329 DOI: 10.1177/0748730407307225  0.828
2007 Hong CI, Conrad ED, Tyson JJ. A proposal for robust temperature compensation of circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America. 104: 1195-200. PMID 17229851 DOI: 10.1073/Pnas.0601378104  0.72
2006 Mehra A, Hong CI, Shi M, Loros JJ, Dunlap JC, Ruoff P. Circadian rhythmicity by autocatalysis. Plos Computational Biology. 2: e96. PMID 16863394 DOI: 10.1371/Journal.Pcbi.0020096  0.785
1997 Hong CI, Tyson JJ. A proposal for temperature compensation of the circadian rhythm in Drosophila based on dimerization of the per protein. Chronobiology International. 14: 521-9. PMID 9298287 DOI: 10.3109/07420529709001473  0.487
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