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Jin Nakashima - Publications

Affiliations: 
2005-2008 Plant Biology Division The Samuel Roberts Noble Foundation, Ardmore, Oklahoma 
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nakashima J, Pattathil S, Avci U, Chin S, Alan Sparks J, Hahn MG, Gilroy S, Blancaflor EB. Glycome profiling and immunohistochemistry uncover changes in cell walls of Arabidopsis thaliana roots during spaceflight. Npj Microgravity. 9: 68. PMID 37608048 DOI: 10.1038/s41526-023-00312-0  0.33
2020 Ramu V, Oh S, Lee HK, Nandety RS, Oh Y, Lee S, Nakashima J, Tang Y, Senthil-Kumar M, Mysore KS. A novel role of salt and drought induced RING 1 protein in modulating plant defense against hemibiotrophic and necrotrophic pathogens. Molecular Plant-Microbe Interactions : Mpmi. PMID 33231502 DOI: 10.1094/MPMI-09-20-0257-R  0.364
2020 Du J, Lu S, Chai M, Zhou C, Sun L, Tang Y, Nakashima J, Kolape J, Wen Z, Behzadirad M, Zhong T, Sun J, Zhang Y, Wang ZY. Functional Characterization of PETIOLULE-LIKE PULVINUS (PLP) Gene in Abscission Zone Development in Medicago truncatula and its Application to Genetic Improvement of Alfalfa. Plant Biotechnology Journal. PMID 32816361 DOI: 10.1111/Pbi.13469  0.489
2019 Zhou C, Han L, Zhao Y, Wang H, Nakashima J, Tong J, Xiao L, Wang ZY. Transforming compound leaf patterning by manipulating. The Plant Journal : For Cell and Molecular Biology. PMID 31350797 DOI: 10.1111/Tpj.14469  0.442
2019 Zhang F, Wang H, Kalve S, Wolabu TW, Nakashima J, Golz JF, Tadege M. Control of leaf blade outgrowth and floral organ development by LEUNIG, ANGUSTIFOLIA3 and WOX transcriptional regulators. The New Phytologist. PMID 31087654 DOI: 10.1111/Nph.15921  0.431
2019 Pislariu CI, Sinharoy S, Torres-Jerez I, Nakashima J, Blancaflor EB, Udvardi MK. The nodule-specific PLAT-domain protein NPD1 is required for nitrogen-fixing symbiosis. Plant Physiology. PMID 31061106 DOI: 10.1104/Pp.18.01613  0.429
2017 Kryvoruchko IS, Routray P, Senjuti S, Torres-Jerez I, Tejada-Jiménez M, Finney LA, Nakashima J, Pislariu CI, Benedito VA, Gonzalez-Guerrero M, Roberts DM, Udvardi MK. An Iron-Activated Citrate Transporter, MtMATE67, Is Required for Symbiotic Nitrogen Fixation. Plant Physiology. PMID 29284744 DOI: 10.1104/Pp.17.01538  0.353
2017 Yoo CM, Naramoto S, Sparks JA, Khan BR, Nakashima J, Fukuda H, Blancaflor EB. Deletion analysis of AGD1 reveals domains crucial for its plasma membrane recruitment and function in root hair polarity. Journal of Cell Science. PMID 28646092 DOI: 10.1242/Jcs.203828  0.355
2016 Chai M, Zhou C, Molina I, Fu C, Nakashima J, Li G, Zhang W, Park J, Tang Y, Jiang Q, Wang ZY. A class II KNOX gene, KNOX4, controls seed physical dormancy. Proceedings of the National Academy of Sciences of the United States of America. PMID 27274062 DOI: 10.1073/Pnas.1601256113  0.429
2016 Rao X, Lu N, Li G, Nakashima J, Tang Y, Dixon RA. Comparative cell-specific transcriptomics reveals differentiation of C4 photosynthesis pathways in switchgrass and other C4 lineages. Journal of Experimental Botany. PMID 26896851 DOI: 10.1093/Jxb/Erv553  0.703
2016 Sinharoy S, Liu C, Breakspear A, Guan D, Shailes S, Nakashima J, Zhang S, Wen J, Torres-Jerez I, Oldroyd GE, Murray JD, Udvardi MK. A Medicago truncatula Cystathionine Beta Synthase like domain-containing protein is required for rhizobial infection and symbiotic nitrogen fixation. Plant Physiology. PMID 26884486 DOI: 10.1104/Pp.15.01853  0.42
2015 Avci U, Nakashima J. A flat embedding method to orient thin biological samples for sectioning. Methods in Molecular Biology (Clifton, N.J.). 1309: 13-22. PMID 25981764 DOI: 10.1007/978-1-4939-2697-8_2  0.361
2015 Gill US, Uppalapati SR, Nakashima J, Mysore KS. Characterization of Brachypodium distachyon as a nonhost model against switchgrass rust pathogen Puccinia emaculata. Bmc Plant Biology. 15: 113. PMID 25953307 DOI: 10.1186/S12870-015-0502-9  0.312
2015 Kwon T, Sparks JA, Nakashima J, Allen SN, Tang Y, Blancaflor EB. Transcriptional response of Arabidopsis seedlings during spaceflight reveals peroxidase and cell wall remodeling genes associated with root hair development. American Journal of Botany. 102: 21-35. PMID 25587145 DOI: 10.3732/Ajb.1400458  0.472
2014 Gallego-Giraldo L, Bhattarai K, Pislariu CI, Nakashima J, Jikumaru Y, Kamiya Y, Udvardi MK, Monteros MJ, Dixon RA. Lignin modification leads to increased nodule numbers in alfalfa. Plant Physiology. 164: 1139-50. PMID 24406794 DOI: 10.1104/Pp.113.232421  0.717
2014 Nakashima J, Liao F, Sparks JA, Tang Y, Blancaflor EB. The actin cytoskeleton is a suppressor of the endogenous skewing behaviour of Arabidopsis primary roots in microgravity. Plant Biology (Stuttgart, Germany). 16: 142-50. PMID 23952736 DOI: 10.1111/Plb.12062  0.396
2013 Zhou C, Han L, Fu C, Wen J, Cheng X, Nakashima J, Ma J, Tang Y, Tan Y, Tadege M, Mysore KS, Xia G, Wang ZY. The trans-acting short interfering RNA3 pathway and no apical meristem antagonistically regulate leaf margin development and lateral organ separation, as revealed by analysis of an argonaute7/lobed leaflet1 mutant in Medicago truncatula. The Plant Cell. 25: 4845-62. PMID 24368797 DOI: 10.1105/Tpc.113.117788  0.43
2013 Zhao Q, Nakashima J, Chen F, Yin Y, Fu C, Yun J, Shao H, Wang X, Wang ZY, Dixon RA. Laccase is necessary and nonredundant with peroxidase for lignin polymerization during vascular development in Arabidopsis. The Plant Cell. 25: 3976-87. PMID 24143805 DOI: 10.1105/Tpc.113.117770  0.723
2013 Sinharoy S, Torres-Jerez I, Bandyopadhyay K, Kereszt A, Pislariu CI, Nakashima J, Benedito VA, Kondorosi E, Udvardi MK. The C2H2 transcription factor regulator of symbiosome differentiation represses transcription of the secretory pathway gene VAMP721a and promotes symbiosome development in Medicago truncatula. The Plant Cell. 25: 3584-601. PMID 24082011 DOI: 10.1105/Tpc.113.114017  0.437
2013 Tobimatsu Y, Chen F, Nakashima J, Escamilla-Treviño LL, Jackson L, Dixon RA, Ralph J. Coexistence but independent biosynthesis of catechyl and guaiacyl/syringyl lignin polymers in seed coats. The Plant Cell. 25: 2587-600. PMID 23903315 DOI: 10.1105/Tpc.113.113142  0.61
2013 Xi J, Chen Y, Nakashima J, Wang SM, Chen R. Medicago truncatula esn1 defines a genetic locus involved in nodule senescence and symbiotic nitrogen fixation. Molecular Plant-Microbe Interactions : Mpmi. 26: 893-902. PMID 23634841 DOI: 10.1094/Mpmi-02-13-0043-R  0.458
2013 Chen F, Tobimatsu Y, Jackson L, Nakashima J, Ralph J, Dixon RA. Novel seed coat lignins in the Cactaceae: structure, distribution and implications for the evolution of lignin diversity. The Plant Journal : For Cell and Molecular Biology. 73: 201-11. PMID 22957702 DOI: 10.1111/Tpj.12012  0.551
2012 Charlton ND, Shoji JY, Ghimire SR, Nakashima J, Craven KD. Deletion of the fungal gene soft disrupts mutualistic symbiosis between the grass endophyte Epichloë festucae and the host plant. Eukaryotic Cell. 11: 1463-71. PMID 23042130 DOI: 10.1128/Ec.00191-12  0.342
2012 Uppalapati SR, Ishiga Y, Doraiswamy V, Bedair M, Mittal S, Chen J, Nakashima J, Tang Y, Tadege M, Ratet P, Chen R, Schultheiss H, Mysore KS. Loss of abaxial leaf epicuticular wax in Medicago truncatula irg1/palm1 mutants results in reduced spore differentiation of anthracnose and nonhost rust pathogens. The Plant Cell. 24: 353-70. PMID 22294617 DOI: 10.1105/Tpc.111.093104  0.436
2011 Zhou C, Han L, Pislariu C, Nakashima J, Fu C, Jiang Q, Quan L, Blancaflor EB, Tang Y, Bouton JH, Udvardi M, Xia G, Wang ZY. From model to crop: functional analysis of a STAY-GREEN gene in the model legume Medicago truncatula and effective use of the gene for alfalfa improvement. Plant Physiology. 157: 1483-96. PMID 21957014 DOI: 10.1104/Pp.111.185140  0.46
2011 Ge L, Gou X, Yuan T, Strout GW, Nakashima J, Blancaflor EB, Tian HQ, Russell SD. Migration of sperm cells during pollen tube elongation in Arabidopsis thaliana: behavior during transport, maturation and upon dissociation of male germ unit associations. Planta. 233: 325-32. PMID 21046146 DOI: 10.1007/S00425-010-1305-8  0.34
2010 Wang H, Avci U, Nakashima J, Hahn MG, Chen F, Dixon RA. Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants. Proceedings of the National Academy of Sciences of the United States of America. 107: 22338-43. PMID 21135241 DOI: 10.1073/Pnas.1016436107  0.723
2010 Zhou R, Jackson L, Shadle G, Nakashima J, Temple S, Chen F, Dixon RA. Distinct cinnamoyl CoA reductases involved in parallel routes to lignin in Medicago truncatula. Proceedings of the National Academy of Sciences of the United States of America. 107: 17803-8. PMID 20876124 DOI: 10.1073/Pnas.1012900107  0.608
2009 Uppalapati SR, Marek SM, Lee HK, Nakashima J, Tang Y, Sledge MK, Dixon RA, Mysore KS. Global gene expression profiling during Medicago truncatula-Phymatotrichopsis omnivora interaction reveals a role for jasmonic acid, ethylene, and the flavonoid pathway in disease development. Molecular Plant-Microbe Interactions : Mpmi. 22: 7-17. PMID 19061398 DOI: 10.1094/Mpmi-22-1-0007  0.535
2008 Nakashima J, Chen F, Jackson L, Shadle G, Dixon RA. Multi-site genetic modification of monolignol biosynthesis in alfalfa (Medicago sativa): effects on lignin composition in specific cell types. The New Phytologist. 179: 738-50. PMID 18547377 DOI: 10.1111/J.1469-8137.2008.02502.X  0.595
2008 Jackson LA, Shadle GL, Zhou R, Nakashima J, Chen F, Dixon RA. Improving Saccharification Efficiency of Alfalfa Stems Through Modification of the Terminal Stages of Monolignol Biosynthesis Bioenergy Research. 1: 180-192. DOI: 10.1007/S12155-008-9020-Z  0.611
2007 Shadle G, Chen F, Srinivasa Reddy MS, Jackson L, Nakashima J, Dixon RA. Down-regulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality. Phytochemistry. 68: 1521-9. PMID 17466347 DOI: 10.1016/J.Phytochem.2007.03.022  0.603
2007 Shadle G, Chen F, Srinivasa Reddy M, Jackson L, Nakashima J, Dixon RA. Erratum to “Down-regulation of hydroxycinnamoyl CoA: Shikimate hydroxycinnamoyl transferase in transgenic alfalfa affects lignification, development and forage quality” [Phytochemistry 68 (2007) 1521–1529] Phytochemistry. 68: 2023. DOI: 10.1016/J.Phytochem.2007.06.006  0.559
2004 Nakashima J, Endo S, Fukuda H. Immunocytochemical localization of polygalacturonase during tracheary element differentiation in Zinnia elegans. Planta. 218: 729-39. PMID 14758475 DOI: 10.1007/S00425-003-1167-4  0.323
1997 Nakashima J, Awano T, Takabe K, Fujita M, Saiki H. Immunocytochemical Localization of Phenylalanine Ammonia-Lyase and Cinnamyl Alcohol Dehydrogenase in Differentiating Tracheary Elements Derived from Zinnia Mesophyll Cells Plant and Cell Physiology. 38: 113-123. DOI: 10.1093/Oxfordjournals.Pcp.A029140  0.353
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