Caitlin Gilbert - Related publications

2013-2015 Neurobiology Harvard Medical School, Boston, MA, United States 
 2015- Rockefeller University, New York, NY, United States 
neuroscience, epigenomics, epigenetics, evolution, language
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Chowdhury F, Wang L, Al-Raqad M, Amor DJ, Baxová A, Bendová Š, Biamino E, Brusco A, Caluseriu O, Cox NJ, Froukh T, Gunay-Aygun M, Hančárová M, Haynes D, Heide S, et al. Haploinsufficiency of PRR12 causes a spectrum of neurodevelopmental, eye, and multisystem abnormalities. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 33824499 DOI: 10.1038/s41436-021-01129-6   
2021 Freewoman JM, Snape R, Cui F. Temporal gene regulation by p53 is associated with the rotational setting of its binding sites in nucleosomes. Cell Cycle (Georgetown, Tex.). 1-16. PMID 33764853 DOI: 10.1080/15384101.2021.1904554   
2021 Dachet F, Brown JB, Valyi-Nagy T, Narayan KD, Serafini A, Boley N, Gingeras TR, Celniker SE, Mohapatra G, Loeb JA. Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain. Scientific Reports. 11: 6078. PMID 33758256 DOI: 10.1038/s41598-021-85801-6   
2021 Nuñez JK, Chen J, Pommier GC, Cogan JZ, Replogle JM, Adriaens C, Ramadoss GN, Shi Q, Hung KL, Samelson AJ, Pogson AN, Kim JYS, Chung A, Leonetti MD, Chang HY, et al. Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing. Cell. PMID 33838111 DOI: 10.1016/j.cell.2021.03.025   
2021 Liu R, Long Q, Zou X, Wang Y, Pei Y. DNA methylation occurring in Cre-expressing cells inhibits loxP recombination and silences loxP-sandwiched genes. The New Phytologist. PMID 33742463 DOI: 10.1111/nph.17353   
2021 Tang D, Zhang Z, Zboril E, Wetzel MD, Xu X, Zhang W, Chen L, Liu Z. Pontin Functions as A Transcriptional Co-activator for Retinoic Acid-induced HOX Gene Expression. Journal of Molecular Biology. 166928. PMID 33713676 DOI: 10.1016/j.jmb.2021.166928   
2021 Larson ED, Marsh AJ, Harrison MM. Pioneering the developmental frontier. Molecular Cell. PMID 33689750 DOI: 10.1016/j.molcel.2021.02.020   
2021 Zhang L, Zhao J, Bi H, Yang X, Zhang Z, Su Y, Li Z, Zhang L, Sanderson BJ, Liu J, Ma T. Bioinformatic analysis of chromatin organization and biased expression of duplicated genes between two poplars with a common whole-genome duplication. Horticulture Research. 8: 62. PMID 33750794 DOI: 10.1038/s41438-021-00494-2   
2021 Wang L, Jia G, Jiang X, Cao S, Chen ZJ, Song Q. Altered chromatin architecture and gene expression during polyploidization and domestication of soybean. The Plant Cell. PMID 33730165 DOI: 10.1093/plcell/koab081   
2021 Andrade A, Hernández-Eligio A, Tirado AL, Vega-Alvarado L, Olvera M, Morett E, Juárez K. Specialization of the Reiterated Copies of the Heterodimeric Integration Host Factor Genes in . Frontiers in Microbiology. 12: 626443. PMID 33737919 DOI: 10.3389/fmicb.2021.626443   
2021 Garcia-Lozano M, Natarajan P, Levi A, Katam R, Lopez-Ortiz C, Nimmakayala P, Reddy UK. Altered chromatin conformation and transcriptional regulation in watermelon following genome doubling. The Plant Journal : For Cell and Molecular Biology. PMID 33788333 DOI: 10.1111/tpj.15256   
2021 Tang Y, Jia Z, Xu H, Da LT, Wu Q. Mechanism of REST/NRSF regulation of clustered protocadherin α genes. Nucleic Acids Research. PMID 33849071 DOI: 10.1093/nar/gkab248   
2021 Casas-Tintó S, Ferrús A. The haplolethality paradox of the wupA gene in Drosophila. Plos Genetics. 17: e1009108. PMID 33739971 DOI: 10.1371/journal.pgen.1009108   
2021 Liu G, Zhao H, Yan Z, Zhao S, Niu Y, Li X, Wang S, Yang Y, Liu S, Zhang TJ, Wu Z, Wu N. Whole-genome methylation analysis reveals novel epigenetic perturbations of congenital scoliosis. Molecular Therapy. Nucleic Acids. 23: 1281-1287. PMID 33717649 DOI: 10.1016/j.omtn.2021.02.002   
2021 Adhikari S, Erill I, Curtis PD. Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria. Plos Genetics. 17: e1009433. PMID 33705385 DOI: 10.1371/journal.pgen.1009433   
2021 Qin Y, Li T, Zhao H, Mao Z, Ding C, Kang Y. Integrated Transcriptomic and Epigenetic Study of PCOS: Impact of and Promoter Methylation on Autophagy. Frontiers in Genetics. 12: 620241. PMID 33763111 DOI: 10.3389/fgene.2021.620241   
2021 Cai M, Liang X, Liu Y, Hu H, Xie Y, Chen S, Gao X, Li X, Xiao C, Chen D, Wu Q. Transcriptional Dynamics of Genes Purportedly Involved in the Control of Meiosis, Carbohydrate, and Secondary Metabolism during Sporulation in . Genes. 12. PMID 33805512 DOI: 10.3390/genes12040504   
2021 Hassan S, Berk K, Aronsson H. Evolution and identification of DREB transcription factors in the wheat genome: modeling, docking and simulation of DREB proteins associated with salt stress. Journal of Biomolecular Structure & Dynamics. 1-14. PMID 33754946 DOI: 10.1080/07391102.2021.1894980   
2021 Pu Y, Chen X, Chen Y, Zhang L, Chen J, Zhang Y, Shao X, Chen J. Transcriptome and Differential Methylation Integration Analysis Identified Important Differential Methylation Annotation Genes and Functional Epigenetic Modules Related to Vitiligo. Frontiers in Immunology. 12: 587440. PMID 33790887 DOI: 10.3389/fimmu.2021.587440   
2021 Wu B, Jiang X, Huang Y, Ying X, Zhang H, Liu B, Li Z, Qi D, Ji W, Cai X. Integrated Analysis of mRNA-mA-protein Profiles Reveals Novel Insights into the Mechanisms for Cadmium-induced Urothelial Transformation. Biomarkers : Biochemical Indicators of Exposure, Response, and Susceptibility to Chemicals. 1-23. PMID 33830842 DOI: 10.1080/1354750X.2021.1913513   
2021 Rittenhouse NL, Carico ZM, Liu YF, Stefan HC, Arruda NL, Zhou J, Dowen JM. Functional impact of cancer-associated cohesin variants on gene expression and cellular identity. Genetics. PMID 33704438 DOI: 10.1093/genetics/iyab025   
2021 Han L, Sun Y, Cao Y, Gao P, Quan Z, Chang Y, Ding J. Analysis of the gene transcription patterns and DNA methylation characteristics of triploid sea cucumbers (Apostichopus japonicus). Scientific Reports. 11: 7564. PMID 33828212 DOI: 10.1038/s41598-021-87278-9   
2021 Tran TQ, Kioussi C. Pitx genes in development and disease. Cellular and Molecular Life Sciences : Cmls. PMID 33844046 DOI: 10.1007/s00018-021-03833-7   
2021 Zhao W, Liu Y, Li L, Meng H, Yang Y, Dong Z, Wang L, Wu G. Genome-Wide Identification and Characterization of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Red Walnut ( L.). Frontiers in Genetics. 12: 632509. PMID 33719341 DOI: 10.3389/fgene.2021.632509   
2021 Singh D, Yi SV. Enhancer pleiotropy, gene expression, and the architecture of human enhancer-gene interactions. Molecular Biology and Evolution. PMID 33749795 DOI: 10.1093/molbev/msab085   
2021 He K, Zhang J, Liu J, Cui Y, Liu LG, Ye S, Ban Q, Pan R, Liu D. Functional genomics study of protein inhibitor of activated STAT1 in mouse hippocampal neuronal cells revealed by RNA sequencing. Aging. 13. PMID 33759814 DOI: 10.18632/aging.202749   
2021 Zhao L, Ma S, Wang L, Wang Y, Feng X, Liang D, Han L, Li M, Li Q. A polygenic methylation prediction model associated with response to chemotherapy in epithelial ovarian cancer. Molecular Therapy Oncolytics. 20: 545-555. PMID 33738340 DOI: 10.1016/j.omto.2021.02.012   
2021 Abbas F, Ke Y, Zhou Y, Yu Y, Waseem M, Ashraf U, Wang C, Wang X, Li X, Yue Y, Yu R, Fan Y. Genome-Wide Analysis Reveals the Potential Role of MYB Transcription Factors in Floral Scent Formation in . Frontiers in Plant Science. 12: 623742. PMID 33719296 DOI: 10.3389/fpls.2021.623742   
2021 Meng F, Zhao H, Zhu B, Zhang T, Yang M, Li Y, Han Y, Jiang J. Genomic Editing of Intronic Enhancers Unveils Their Role in Fine-Tuning Tissue-Specific Gene Expression in Arabidopsis thaliana. The Plant Cell. PMID 33764459 DOI: 10.1093/plcell/koab093   
2021 Huang SK, Tripathi P, Koneva LA, Cavalcante RG, Craig N, Scruggs AM, Sartor MA, Deng F, Chen Y. Effect of concentration and duration of particulate matter exposure on the transcriptome and DNA methylome of bronchial epithelial cells. Environmental Epigenetics. 7: dvaa022. PMID 33692908 DOI: 10.1093/eep/dvaa022   
2021 Zhang J, Liu B, Gu D, Hao Y, Chen M, Ma Y, Zhou X, Reverter D, Zhang Y, Wang Q. Binding site profiles and N-terminal minor groove interactions of the master quorum-sensing regulator LuxR enable flexible control of gene activation and repression. Nucleic Acids Research. PMID 33693882 DOI: 10.1093/nar/gkab150   
2021 Wang Y, Lin W, Brown JE, Chen L, Pandak WM, Hylemon PB, Ren S. 25-hydroxycholesterol 3-sulfate is an endogenous ligand of DNA methyltransferases in hepatocytes. Journal of Lipid Research. 100063. PMID 33705741 DOI: 10.1016/j.jlr.2021.100063   
2021 Zhou G, Wang T, Zha XM. RNA-Seq analysis of knocking out the neuroprotective proton-sensitive GPR68 on basal and acute ischemia-induced transcriptome changes and signaling in mouse brain. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21461. PMID 33724568 DOI: 10.1096/fj.202002511R   
2021 Christensen KA, Le Luyer J, Chan MTT, Rondeau EB, Koop BF, Bernatchez L, Devlin RH. Assessing the effects of genotype-by-environment interaction on epigenetic, transcriptomic, and phenotypic response in a Pacific salmon. G3 (Bethesda, Md.). 11. PMID 33712817 DOI: 10.1093/g3journal/jkab021   
2021 Mizuguchi M, Hara T, Yoshita-Takahashi M, Kohda T, Tanaka Y, Nakamura M. Promoter CpG methylation inhibits Krüppel-like factor 2 (KLF2)-Mediated repression of hTERT gene expression in human T-cells. Biochemistry and Biophysics Reports. 26: 100984. PMID 33768169 DOI: 10.1016/j.bbrep.2021.100984   
2021 Maldonado-Taipe N, Patirange DSR, Schmöckel SM, Jung C, Emrani N. Validation of suitable genes for normalization of diurnal gene expression studies in Chenopodium quinoa. Plos One. 16: e0233821. PMID 33705394 DOI: 10.1371/journal.pone.0233821   
2021 Huang D, Wang X, Liu Y, Huang Z, Hu X, Hu W, Li Q, Chan H, Zou Y, Ho IHT, Wang Y, Cheng ASL, Kang W, To KF, Wang MHT, et al. Multi-omic analysis suggests tumor suppressor genes evolved specific promoter features to optimize cancer resistance. Briefings in Bioinformatics. PMID 33783485 DOI: 10.1093/bib/bbab040   
2021 Jiang Y, An X, Li Z, Yan T, Zhu T, Xie K, Liu S, Hou Q, Zhao L, Wu S, Liu X, Zhang S, He W, Li F, Li J, et al. CRISPR/Cas9-based Discovery of Maize Transcription Factors Regulating Male Sterility and Their Functional Conservation in Plants. Plant Biotechnology Journal. PMID 33772993 DOI: 10.1111/pbi.13590   
2021 Peña JM, Prezioso SM, McFarland KA, Kambara TK, Ramsey KM, Deighan P, Dove SL. Control of a programmed cell death pathway in Pseudomonas aeruginosa by an antiterminator. Nature Communications. 12: 1702. PMID 33731715 DOI: 10.1038/s41467-021-21941-7   
2021 Li J, Seidlitz J, Suckling J, Fan F, Ji GJ, Meng Y, Yang S, Wang K, Qiu J, Chen H, Liao W. Cortical structural differences in major depressive disorder correlate with cell type-specific transcriptional signatures. Nature Communications. 12: 1647. PMID 33712584 DOI: 10.1038/s41467-021-21943-5   
2021 Chen QL, Yan Q, Feng KL, Xie CF, Fang CK, Wang JN, Liu LH, Li Y, Zhong C. Using Integrated Bioinformatics Analysis to Identify Abnormally Methylated Differentially Expressed Genes in Hepatocellular Carcinoma. International Journal of General Medicine. 14: 805-823. PMID 33732011 DOI: 10.2147/IJGM.S294505   
2021 Wang B, Wang W, Wang H, Liu W. Microarray Analysis of Novel Genes Involved in Nasopharyngeal Carcinoma. Bulletin of Experimental Biology and Medicine. PMID 33788105 DOI: 10.1007/s10517-021-05127-1   
2021 Xie J, Deng Z, Alahdal M, Liu J, Zhao Z, Chen X, Wang G, Hu X, Duan L, Wang D, Li W. Screening and verification of hub genes involved in osteoarthritis using bioinformatics. Experimental and Therapeutic Medicine. 21: 330. PMID 33732303 DOI: 10.3892/etm.2021.9761   
2021 Zhang J, Zhang Y, He X, Wang S, Pang S, Yan B. TFEB Gene Promoter Variants Effect on Gene Expression in Acute Myocardial Infarction. Frontiers in Cell and Developmental Biology. 9: 630279. PMID 33732699 DOI: 10.3389/fcell.2021.630279   
2021 Dai J, Chen Y, Dai R, Jiang Y, Tian J, Liu S, Xu M, Li M, Zhou J, Liu C, Chen C. Agonal Factors Distort Gene-Expression Patterns in Human Postmortem Brains. Frontiers in Neuroscience. 15: 614142. PMID 33841074 DOI: 10.3389/fnins.2021.614142   
2021 Li X, Sun J, Chen Z, Jiang J, Jackson A. Metabolite profile and genes/proteins expression in β-citraturin biosynthesis during fruit ripening in Chinese raspberry (Rubus chingii Hu). Plant Physiology and Biochemistry : Ppb. 163: 76-86. PMID 33819717 DOI: 10.1016/j.plaphy.2021.03.022   
2021 Ross SE, Hesselson D, Bogdanovic O. Developmental Accumulation of Gene Body and Transposon Non-CpG Methylation in the Zebrafish Brain. Frontiers in Cell and Developmental Biology. 9: 643603. PMID 33748137 DOI: 10.3389/fcell.2021.643603   
2021 Montalbán-Loro R, Lassi G, Lozano-Ureña A, Perez-Villalba A, Jiménez-Villalba E, Charalambous M, Vallortigara G, Horner AE, Saksida LM, Bussey TJ, Trejo JL, Tucci V, Ferguson-Smith AC, Ferrón SR. dosage regulates hippocampal neurogenesis and cognition. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33712542 DOI: 10.1073/pnas.2015505118   
2021 Sang Y, Liu J, Li X, Zhou G, Zhang Y, Gao L, Zhao Y, Zhou X. The effect of SiNPs on DNA methylation of genome in mouse spermatocytes. Environmental Science and Pollution Research International. PMID 33840017 DOI: 10.1007/s11356-021-13459-8   
2021 Kwik M, Hainzl S, Oppelt J, Tichy B, Koller U, Bernardinelli E, Steiner M, Zara G, Nofziger C, Weis S, Paulmichl M, Dossena S, Patsch W, Soyal SM. Selective Activation of CNS and Reference Promoters Is Associated with Distinct Gene Programs Relevant for Neurodegenerative Diseases. International Journal of Molecular Sciences. 22. PMID 33804860 DOI: 10.3390/ijms22073296