| Year |
Citation |
Score |
| 2024 |
Truong-Quoc C, Lee JY, Kim KS, Kim DN. Prediction of DNA origami shape using graph neural network. Nature Materials. PMID 38486095 DOI: 10.1038/s41563-024-01846-8 |
0.4 |
|
| 2024 |
Kim T, Lee C, Lee JY, Kim DN. Controlling Chiroptical Responses via Chemo-Mechanical Deformation of DNA Origami Structures. Acs Nano. PMID 38236130 DOI: 10.1021/acsnano.3c10386 |
0.366 |
|
| 2023 |
Lee JY, Koh H, Kim DN. A computational model for structural dynamics and reconfiguration of DNA assemblies. Nature Communications. 14: 7079. PMID 37925463 DOI: 10.1038/s41467-023-42873-4 |
0.425 |
|
| 2023 |
Kim M, Lee C, Jeon K, Lee JY, Kim YJ, Lee JG, Kim H, Cho M, Kim DN. Harnessing a paper-folding mechanism for reconfigurable DNA origami. Nature. 619: 78-86. PMID 37407684 DOI: 10.1038/s41586-023-06181-7 |
0.392 |
|
| 2022 |
Do S, Lee C, Lee T, Kim DN, Shin Y. Engineering DNA-based synthetic condensates with programmable material properties, compositions, and functionalities. Science Advances. 8: eabj1771. PMID 36240277 DOI: 10.1126/sciadv.abj1771 |
0.341 |
|
| 2022 |
Ni H, Fan X, Zhou F, Guo G, Lee JY, Seeman NC, Kim DN, Yao N, Chaikin PM, Han Y. Direct visualization of floppy two-dimensional DNA origami using cryogenic electron microscopy. Iscience. 25: 104373. PMID 35620419 DOI: 10.1016/j.isci.2022.104373 |
0.409 |
|
| 2022 |
Lee C, Do S, Lee JY, Kim M, Kim SM, Shin Y, Kim DN. Formation of non-base-pairing DNA microgels using directed phase transition of amphiphilic monomers. Nucleic Acids Research. PMID 35390157 DOI: 10.1093/nar/gkac232 |
0.378 |
|
| 2022 |
Lee JG, Kim KS, Lee JY, Kim DN. Predicting the Free-Form Shape of Structured DNA Assemblies from Their Lattice-Based Design Blueprint. Acs Nano. PMID 35188742 DOI: 10.1021/acsnano.1c10347 |
0.348 |
|
| 2021 |
Koh H, Lee JG, Lee JY, Kim R, Tabata O, Jin-Woo K, Kim DN. Design Approaches and Computational Tools for DNA Nanostructures. Ieee Open Journal of Nanotechnology. 2: 86-100. PMID 35756857 DOI: 10.1109/ojnano.2021.3119913 |
0.394 |
|
| 2021 |
Lee JY, Kim M, Lee C, Kim DN. Characterizing and Harnessing the Mechanical Properties of Short Single-Stranded DNA in Structured Assemblies. Acs Nano. PMID 34870958 DOI: 10.1021/acsnano.1c08861 |
0.44 |
|
| 2021 |
Lee C, Kim YJ, Kim KS, Lee JY, Kim DN. Modulating the chemo-mechanical response of structured DNA assemblies through binding molecules. Nucleic Acids Research. PMID 34850119 DOI: 10.1093/nar/gkab1119 |
0.392 |
|
| 2021 |
Kim YJ, Park J, Lee JY, Kim DN. Programming ultrasensitive threshold response through chemomechanical instability. Nature Communications. 12: 5177. PMID 34462430 DOI: 10.1038/s41467-021-25406-9 |
0.335 |
|
| 2021 |
Lee JY, Lee JG, Yun G, Lee C, Kim YJ, Kim KS, Kim TH, Kim DN. Rapid Computational Analysis of DNA Origami Assemblies at Near-Atomic Resolution. Acs Nano. PMID 33410664 DOI: 10.1021/acsnano.0c07717 |
0.442 |
|
| 2019 |
Lee C, Kim KS, Kim YJ, Lee JY, Kim DN. Tailoring the Mechanical Stiffness of DNA Nanostructures Using Engineered Defects. Acs Nano. PMID 31291091 DOI: 10.1021/Acsnano.9B03770 |
0.478 |
|
| 2019 |
Kim YJ, Lee C, Lee JG, Kim DN. Configurational Design of Mechanical Perturbation for Fine Control of Twisted DNA Origami Structures. Acs Nano. PMID 31091071 DOI: 10.1021/Acsnano.9B01561 |
0.505 |
|
| 2018 |
Lee JY, Kim YJ, Lee C, Lee JG, Yagyu H, Tabata O, Kim DN. Investigating the sequence-dependent mechanical properties of DNA nicks for applications in twisted DNA nanostructure design. Nucleic Acids Research. PMID 30476210 DOI: 10.1093/Nar/Gky1189 |
0.505 |
|
| 2018 |
Lee C, Lee JY, Kim DN. Publisher Correction: Polymorphic design of DNA origami structures through mechanical control of modular components. Nature Communications. 9: 626. PMID 29416024 DOI: 10.1038/S41467-018-02948-Z |
0.302 |
|
| 2018 |
Sedeh RS, Yun G, Lee JY, Bathe K, Kim D. A framework of finite element procedures for the analysis of proteins Computers & Structures. 196: 24-35. DOI: 10.1016/J.Compstruc.2017.10.015 |
0.387 |
|
| 2017 |
Lee C, Lee JY, Kim DN. Polymorphic design of DNA origami structures through mechanical control of modular components. Nature Communications. 8: 2067. PMID 29233997 DOI: 10.1038/S41467-017-02127-6 |
0.483 |
|
| 2017 |
Ma Z, Huang Y, Park S, Kawai K, Kim DN, Hirai Y, Tsuchiya T, Yamada H, Tabata O. Rhombic-Shaped Nanostructures and Mechanical Properties of 2D DNA Origami Constructed with Different Crossover/Nick Designs. Small (Weinheim An Der Bergstrasse, Germany). PMID 29131541 DOI: 10.1002/Smll.201702028 |
0.509 |
|
| 2017 |
Yun G, Kim J, Kim DN. A critical assessment of finite element modeling approach for protein dynamics. Journal of Computer-Aided Molecular Design. PMID 28573346 DOI: 10.1007/S10822-017-0027-4 |
0.368 |
|
| 2017 |
Yagyu H, Lee JY, Kim DN, Tabata O. Coarse-Grained Molecular Dynamics Model of Double-Stranded DNA for DNA Nanostructure Design. The Journal of Physical Chemistry. B. PMID 28448145 DOI: 10.1021/Acs.Jpcb.7B03931 |
0.439 |
|
| 2017 |
Yoon K, Lee P, Kim D. An efficient warping model for elastoplastic torsional analysis of composite beams Composite Structures. 178: 37-49. DOI: 10.1016/J.Compstruct.2017.07.041 |
0.304 |
|
| 2017 |
Kim J, Park Y, Lee GH, Kim D. A general model reduction with primal assembly in structural dynamics Computer Methods in Applied Mechanics and Engineering. 324: 1-28. DOI: 10.1016/J.Cma.2017.06.007 |
0.347 |
|
| 2016 |
Kim YJ, Kim DN. Structural Basis for Elastic Mechanical Properties of the DNA Double Helix. Plos One. 11: e0153228. PMID 27055239 DOI: 10.1371/Journal.Pone.0153228 |
0.465 |
|
| 2016 |
Kim Y, Kim D. Sensitivity Analysis for the Mechanical Properties of DNA Bundles Journal of Nanomaterials. 2016: 6287937. DOI: 10.1155/2016/6287937 |
0.52 |
|
| 2015 |
Kim J, Kim JG, Yun G, Lee PS, Kim DN. Toward Modular Analysis of Supramolecular Protein Assemblies. Journal of Chemical Theory and Computation. 11: 4260-4272. PMID 26575921 DOI: 10.1021/Acs.Jctc.5B00329 |
0.392 |
|
| 2015 |
Ma Z, Kim YJ, Park S, Hirai Y, Tsuchiya T, Kim DN, Tabata O. Direct measurement of transversely isotropic DNA nanotube by force distance curve-based atomic force microscopy Micro and Nano Letters. 10: 513-517. DOI: 10.1049/Mnl.2015.0174 |
0.503 |
|
| 2015 |
Pan K, Kim D, Zhang F, Adendorff M, Yan H, Bathe M. Lattice-Free 3D Structure-Prediction of Programmed DNA Assemblies Biophysical Journal. 108: 232a. DOI: 10.1016/J.Bpj.2014.11.1283 |
0.663 |
|
| 2014 |
Pan K, Kim DN, Zhang F, Adendorff MR, Yan H, Bathe M. Lattice-free prediction of three-dimensional structure of programmed DNA assemblies. Nature Communications. 5: 5578. PMID 25470497 DOI: 10.1038/Ncomms6578 |
0.625 |
|
| 2013 |
Johnson-Buck A, Nangreave J, Kim DN, Bathe M, Yan H, Walter NG. Super-resolution fingerprinting detects chemical reactions and idiosyncrasies of single DNA pegboards. Nano Letters. 13: 728-33. PMID 23356935 DOI: 10.1021/Nl304415B |
0.541 |
|
| 2013 |
Kim D, Adendorff MR, Pan K, Bathe M. Biophysical Modeling of Nucleic Acid Nanostructure Solution Shape and Stability Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.193 |
0.659 |
|
| 2012 |
Kim DN, Kilchherr F, Dietz H, Bathe M. Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures. Nucleic Acids Research. 40: 2862-8. PMID 22156372 DOI: 10.1093/Nar/Gkr1173 |
0.658 |
|
| 2011 |
Castro CE, Kilchherr F, Kim DN, Shiao EL, Wauer T, Wortmann P, Bathe M, Dietz H. A primer to scaffolded DNA origami. Nature Methods. 8: 221-9. PMID 21358626 DOI: 10.1038/Nmeth.1570 |
0.643 |
|
| 2011 |
Kim DN, Altschuler J, Strong C, McGill G, Bathe M. Conformational dynamics data bank: a database for conformational dynamics of proteins and supramolecular protein assemblies. Nucleic Acids Research. 39: D451-5. PMID 21051356 DOI: 10.1093/Nar/Gkq1088 |
0.596 |
|
| 2011 |
Kim DN, Nguyen CT, Bathe M. Conformational dynamics of supramolecular protein assemblies. Journal of Structural Biology. 173: 261-70. PMID 20854912 DOI: 10.1016/J.Jsb.2010.09.015 |
0.627 |
|
| 2011 |
Kim D, Nguyen C, Bathe M. Conformational Dynamics and Allostery of Supramolecular Protein Assemblies: from the Nuclear Pore Complex to GroEL Biophysical Journal. 100: 172a. DOI: 10.1016/J.Bpj.2010.12.1163 |
0.615 |
|
| 2008 |
Kim DN, Bathe KJ. A 4-node 3D-shell element to model shell surface tractions and incompressible behavior Computers and Structures. 86: 2027-2041. DOI: 10.1016/J.Compstruc.2008.04.019 |
0.313 |
|
| Show low-probability matches. |