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Saket Navlakha - Publications

Affiliations: 
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 How JJ, Navlakha S, Chalasani SH. Neural network features distinguish chemosensory stimuli in Caenorhabditis elegans. Plos Computational Biology. 17: e1009591. PMID 34752447 DOI: 10.1371/journal.pcbi.1009591  0.721
2021 Chandrasekhar A, Marshall JAR, Austin C, Navlakha S, Gordon DM. Better tired than lost: Turtle ant trail networks favor coherence over short edges. Plos Computational Biology. 17: e1009523. PMID 34673768 DOI: 10.1371/journal.pcbi.1009523  0.674
2021 Shen Y, Wang J, Navlakha S. A Correspondence between Normalization Strategies in Artificial and Biological Neural Networks. Neural Computation. 1-25. PMID 34474484 DOI: 10.1162/neco_a_01439  0.364
2019 Conn A, Chandrasekhar A, Rongen MV, Leyser O, Chory J, Navlakha S. Network trade-offs and homeostasis in Arabidopsis shoot architectures. Plos Computational Biology. 15: e1007325. PMID 31509526 DOI: 10.1371/Journal.Pcbi.1007325  0.612
2019 Rashid S, Long Z, Singh S, Kohram M, Vashistha H, Navlakha S, Salman H, Oltvai ZN, Bar-Joseph Z. Adjustment in tumbling rates improves bacterial chemotaxis on obstacle-laden terrains. Proceedings of the National Academy of Sciences of the United States of America. PMID 31127043 DOI: 10.1073/Pnas.1816315116  0.543
2019 Suen JY, Navlakha S. Travel in city road networks follows similar transport trade-off principles to neural and plant arbors. Journal of the Royal Society, Interface. 16: 20190041. PMID 31088262 DOI: 10.1098/Rsif.2019.0041  0.463
2019 Chandrasekhar A, Navlakha S. Neural arbors are Pareto optimal. Proceedings. Biological Sciences. 286: 20182727. PMID 31039719 DOI: 10.1098/Rspb.2018.2727  0.653
2019 Rashid S, Singh S, Navlakha S, Bar-Joseph Z. A bacterial based distributed gradient descent model for mass scale evacuations Swarm and Evolutionary Computation. 46: 97-103. DOI: 10.1016/J.Swevo.2019.01.011  0.577
2018 Chandrasekhar A, Gordon DM, Navlakha S. A distributed algorithm to maintain and repair the trail networks of arboreal ants. Scientific Reports. 8: 9297. PMID 29915325 DOI: 10.1038/S41598-018-27160-3  0.677
2018 How JJ, Navlakha S. Evidence of Rentian Scaling of Functional Modules in Diverse Biological Networks. Neural Computation. 1-35. PMID 29894651 DOI: 10.1162/Neco_A_01095  0.74
2017 Dasgupta S, Stevens CF, Navlakha S. A neural algorithm for a fundamental computing problem. Science (New York, N.Y.). 358: 793-796. PMID 29123069 DOI: 10.1126/Science.Aam9868  0.336
2017 Navlakha S, Bar-Joseph Z, Barth AL. Network Design and the Brain. Trends in Cognitive Sciences. PMID 29054336 DOI: 10.1016/J.Tics.2017.09.012  0.669
2017 Conn A, Pedmale UV, Chory J, Navlakha S. High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles. Cell Systems. 5: 53-62.e3. PMID 28750198 DOI: 10.1016/J.Cels.2017.06.017  0.373
2017 Suen JY, Navlakha S. Using Inspiration from Synaptic Plasticity Rules to Optimize Traffic Flow in Distributed Engineered Networks. Neural Computation. 1-25. PMID 28181878 DOI: 10.1162/Neco_A_00945  0.459
2017 Navlakha S. Learning the Structural Vocabulary of a Network. Neural Computation. 29: 287-312. PMID 28030777 DOI: 10.1162/Neco_A_00924  0.539
2015 Chandrasekaran S, Navlakha S, Audette NJ, McCreary DD, Suhan J, Bar-Joseph Z, Barth AL. Unbiased, High-Throughput Electron Microscopy Analysis of Experience-Dependent Synaptic Changes in the Neocortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 16450-62. PMID 26674870 DOI: 10.1523/Jneurosci.1573-15.2015  0.538
2015 Navlakha S, Barth AL, Bar-Joseph Z. Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks. Plos Computational Biology. 11: e1004347. PMID 26217933 DOI: 10.1371/Journal.Pcbi.1004347  0.697
2015 Navlakha S, Barth AL, Bar-Joseph Z. Decreasing-Rate Pruning Optimizes the Construction of Efficient and Robust Distributed Networks Plos Computational Biology. 11. DOI: 10.1371/journal.pcbi.1004347  0.308
2015 Navlakha S, Bar-Joseph Z. Distributed information processing in biological and computational systems Communications of the Acm. 58: 94-102. DOI: 10.1145/2678280  0.539
2015 Navlakha S, Faloutsos C, Bar-Joseph Z. MassExodus: modeling evolving networks in harsh environments Data Mining and Knowledge Discovery. 29: 1211-1232. DOI: 10.1007/S10618-014-0399-1  0.692
2014 Navlakha S, He X, Faloutsos C, Bar-Joseph Z. Topological properties of robust biological and computational networks. Journal of the Royal Society, Interface / the Royal Society. 11: 20140283. PMID 24789562 DOI: 10.1098/Rsif.2014.0283  0.709
2013 Navlakha S, Suhan J, Barth AL, Bar-Joseph Z. A high-throughput framework to detect synapses in electron microscopy images. Bioinformatics (Oxford, England). 29: i9-17. PMID 23813014 DOI: 10.1093/Bioinformatics/Btt222  0.552
2012 Patro R, Sefer E, Malin J, Marçais G, Navlakha S, Kingsford C. Parsimonious reconstruction of network evolution. Algorithms For Molecular Biology : Amb. 7: 25. PMID 22992218 DOI: 10.1186/1748-7188-7-25  0.779
2012 Navlakha S, Gitter A, Bar-Joseph Z. A network-based approach for predicting missing pathway interactions. Plos Computational Biology. 8: e1002640. PMID 22916002 DOI: 10.1371/Journal.Pcbi.1002640  0.724
2011 Navlakha S, Bar-Joseph Z. Algorithms in nature: the convergence of systems biology and computational thinking. Molecular Systems Biology. 7: 546. PMID 22068329 DOI: 10.1038/Msb.2011.78  0.609
2011 Navlakha S, Kingsford C. Network archaeology: uncovering ancient networks from present-day interactions. Plos Computational Biology. 7: e1001119. PMID 21533211 DOI: 10.1371/Journal.Pcbi.1001119  0.72
2010 Navlakha S, White J, Nagarajan N, Pop M, Kingsford C. Finding biologically accurate clusterings in hierarchical tree decompositions using the variation of information. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 17: 503-16. PMID 20377460 DOI: 10.1089/Cmb.2009.0173  0.632
2010 White JR, Navlakha S, Nagarajan N, Ghodsi MR, Kingsford C, Pop M. Alignment and clustering of phylogenetic markers--implications for microbial diversity studies. Bmc Bioinformatics. 11: 152. PMID 20334679 DOI: 10.1186/1471-2105-11-152  0.625
2010 Navlakha S, Kingsford C. The power of protein interaction networks for associating genes with diseases. Bioinformatics (Oxford, England). 26: 1057-63. PMID 20185403 DOI: 10.1093/Bioinformatics/Btq076  0.647
2010 Navlakha S, Kingsford C. Exploring biological network dynamics with ensembles of graph partitions. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 166-77. PMID 19908369  0.704
2009 Navlakha S, Schatz MC, Kingsford C. Revealing biological modules via graph summarization. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 16: 253-64. PMID 19183002 DOI: 10.1089/Cmb.2008.11Tt  0.675
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