Olaf Wolkenhauer - Publications

University of Rostock, Rostock, Mecklenburg-Vorpommern, Germany 

95 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Tretter F, Peters EMJ, Sturmberg J, Bennett J, Voit E, Dietrich JW, Smith G, Weckwerth W, Grossman Z, Wolkenhauer O, Marcum JA. Perspectives of (/memorandum for) systems thinking on COVID-19 pandemic and pathology. Journal of Evaluation in Clinical Practice. PMID 36168893 DOI: 10.1111/jep.13772  0.74
2021 Tretter F, Wolkenhauer O, Meyer-Hermann M, Dietrich JW, Green S, Marcum J, Weckwerth W. The Quest for System-Theoretical Medicine in the COVID-19 Era. Frontiers in Medicine. 8: 640974. PMID 33855036 DOI: 10.3389/fmed.2021.640974  0.755
2020 Logotheti S, Marquardt S, Gupta SK, Richter C, Edelhäuser BAH, Engelmann D, Brenmoehl J, Söhnchen C, Murr N, Alpers M, Singh KP, Wolkenhauer O, Heckl D, Spitschak A, Pützer BM. LncRNA-SLC16A1-AS1 induces metabolic reprogramming during Bladder Cancer progression as target and co-activator of E2F1. Theranostics. 10: 9620-9643. PMID 32863950 DOI: 10.7150/Thno.44176  0.3
2020 Nikolov S, Wolkenhauer O, Vera J, Nenov M. The role of cooperativity in a p53-miR34 dynamical mathematical model. Journal of Theoretical Biology. 495: 110252. PMID 32199858 DOI: 10.1016/J.Jtbi.2020.110252  0.306
2020 Auffray C, Balling R, Blomberg N, Bonaldo MC, Boutron B, Brahmachari S, Bréchot C, Cesario A, Chen S, Clément K, Danilenko D, Di Meglio A, Gelemanović A, Goble C, Gojobori T, ... ... Wolkenhauer O, et al. COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight F1000research. 9: 1130. DOI: 10.12688/F1000Research.26098.1  0.313
2019 Wolfien M, Brauer DL, Bagnacani A, Wolkenhauer O. Workflow Development for the Functional Characterization of ncRNAs. Methods in Molecular Biology (Clifton, N.J.). 1912: 111-132. PMID 30635892 DOI: 10.1007/978-1-4939-8982-9_5  0.33
2019 Schopohl P, Smita S, Khan F, Gebhardt T, Hoch M, Brauer D, Cesnulevicius K, Schultz M, Wolkenhauer O, Gupta S. Ab0063 A Systems Approach To Investigate Inflammation Resolution By Multicomponent Medicinal Product Tr14 Annals of the Rheumatic Diseases. 78: 1496-1496. DOI: 10.1136/Annrheumdis-2019-Eular.5084  0.327
2019 Wolkenhauer O. Vom Anfang und Ende der Systembiologie Biospektrum. 25: 507-509. DOI: 10.1007/S12268-019-1086-Y  0.369
2018 Neal ML, König M, Nickerson D, Misirli G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, ... ... Wolkenhauer O, et al. Harmonizing semantic annotations for computational models in biology. Briefings in Bioinformatics. PMID 30462164 DOI: 10.1093/Bib/Bby087  0.349
2018 Khan FM, Gupta SK, Wolkenhauer O. Integrative workflows for network analysis. Essays in Biochemistry. 62: 549-561. PMID 30366988 DOI: 10.1042/Ebc20180005  0.316
2018 Lambusch F, Waltemath D, Wolkenhauer O, Sandkuhl K, Rosenke C, Henkel R. Identifying frequent patterns in biochemical reaction networks: a workflow. Database : the Journal of Biological Databases and Curation. 2018. PMID 29992320 DOI: 10.1093/Database/Bay051  0.329
2018 Scharm M, Gebhardt T, Touré V, Bagnacani A, Salehzadeh-Yazdi A, Wolkenhauer O, Waltemath D. Evolution of computational models in BioModels Database and the Physiome Model Repository. Bmc Systems Biology. 12: 53. PMID 29650016 DOI: 10.1186/S12918-018-0553-2  0.303
2018 Apweiler R, Beissbarth T, Berthold MR, Blüthgen N, Burmeister Y, Dammann O, Deutsch A, Feuerhake F, Franke A, Hasenauer J, Hoffmann S, Höfer T, Jansen PL, Kaderali L, Klingmüller U, ... ... Wolkenhauer O, et al. Whither systems medicine? Experimental & Molecular Medicine. 50: e453. PMID 29497170 DOI: 10.1038/Emm.2017.290  0.366
2018 Jalili M, Gebhardt T, Wolkenhauer O, Salehzadeh-Yazdi A. Unveiling network-based functional features through integration of gene expression into protein networks. Biochimica Et Biophysica Acta. PMID 29466699 DOI: 10.1016/J.Bbadis.2018.02.010  0.324
2018 Touré V, Le Novère N, Waltemath D, Wolkenhauer O. Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation. Plos Computational Biology. 14: e1005740. PMID 29447151 DOI: 10.1371/Journal.Pcbi.1005740  0.327
2018 Dreyer FS, Cantone M, Eberhardt M, Jaitly T, Walter L, Wittmann J, Gupta S, Khan F, Wolkenhauer O, Pützer B, Jäck HM, Heinzerling L, Vera J. A web platform for the network analysis of highthroughput data in melanoma and its use to investigate mechanisms of resistance to anti-PD1 immunotherapy. Biochimica Et Biophysica Acta. PMID 29410200 DOI: 10.1016/J.Bbadis.2018.01.020  0.312
2018 Nikolov S, Santos G, Wolkenhauer O, Vera J. Model-Based Phenotypic Signatures Governing the Dynamics of the Stem and Semi-differentiated Cell Populations in Dysplastic Colonic Crypts. Bulletin of Mathematical Biology. 80: 360-384. PMID 29218591 DOI: 10.1007/S11538-017-0378-Y  0.331
2018 Khan FM, Sadeghi M, Gupta SK, Wolkenhauer O. A Network-Based Integrative Workflow to Unravel Mechanisms Underlying Disease Progression. Methods in Molecular Biology (Clifton, N.J.). 1702: 247-276. PMID 29119509 DOI: 10.1007/978-1-4939-7456-6_12  0.341
2017 Razavi SM, Sabbaghian M, Jalili M, Divsalar A, Wolkenhauer O, Salehzadeh-Yazdi A. Comprehensive functional enrichment analysis of male infertility. Scientific Reports. 7: 15778. PMID 29150651 DOI: 10.1038/S41598-017-16005-0  0.337
2017 Singh N, Freiesleben S, Gupta SK, Shukla Y, Wolkenhauer O. Identification of antineoplastic targets with systems approaches, using resveratrol as an in-depth case study. Current Pharmaceutical Design. PMID 28699531 DOI: 10.2174/1381612823666170710152918  0.342
2016 Scharm M, Waltemath D, Mendes P, Wolkenhauer O. COMODI: an ontology to characterise differences in versions of computational models in biology. Journal of Biomedical Semantics. 7: 46. PMID 27401413 DOI: 10.1186/S13326-016-0080-2  0.334
2016 Waltemath D, Wolkenhauer O. How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine. Ieee Transactions On Bio-Medical Engineering. 63: 1999-2006. PMID 27295645 DOI: 10.1109/Tbme.2016.2555481  0.336
2016 Rateitschak K, Kaderali L, Wolkenhauer O, Jaster R. Autocrine TGF-β/ZEB/microRNA-200 signal transduction drives epithelial-mesenchymal transition: Kinetic models predict minimal drug dose to inhibit metastasis. Cellular Signalling. 28: 861-70. PMID 27000495 DOI: 10.1016/J.Cellsig.2016.03.002  0.315
2016 Strunz S, Wolkenhauer O, de la Fuente A. Network-Assisted Disease Classification and Biomarker Discovery. Methods in Molecular Biology (Clifton, N.J.). 1386: 353-74. PMID 26677191 DOI: 10.1007/978-1-4939-3283-2_16  0.329
2016 Amirkhah R, Farazmand A, Wolkenhauer O, Schmitz U. RNA Systems Biology for Cancer: From Diagnosis to Therapy. Methods in Molecular Biology (Clifton, N.J.). 1386: 305-30. PMID 26677189 DOI: 10.1007/978-1-4939-3283-2_14  0.327
2016 Scharm M, Wolkenhauer O, Waltemath D. An algorithm to detect and communicate the differences in computational models describing biological systems. Bioinformatics (Oxford, England). 32: 563-70. PMID 26490504 DOI: 10.1093/Bioinformatics/Btv484  0.315
2016 Henkel R, Lambusch F, Wolkenhauer O, Sandkuhl K, Rosenke C, Waltemath D. Finding patterns in biochemical reaction networks Peerj. 4. DOI: 10.7287/Peerj.Preprints.1479V2  0.317
2015 Schmitz U, Naderi-Meshkin H, Gupta SK, Wolkenhauer O, Vera J. The RNA world in the 21st century-a systems approach to finding non-coding keys to clinical questions. Briefings in Bioinformatics. PMID 26330575 DOI: 10.1093/Bib/Bbv061  0.322
2015 Gupta SK, Jaitly T, Schmitz U, Schuler G, Wolkenhauer O, Vera J. Personalized cancer immunotherapy using Systems Medicine approaches. Briefings in Bioinformatics. PMID 26174229 DOI: 10.1093/Bib/Bbv046  0.323
2015 Alm R, Waltemath D, Wolfien M, Wolkenhauer O, Henkel R. Annotation-based feature extraction from sets of SBML models. Journal of Biomedical Semantics. 6: 20. PMID 25904997 DOI: 10.1186/S13326-015-0014-4  0.327
2015 Henkel R, Wolkenhauer O, Waltemath D. Combining computational models, semantic annotations and simulation experiments in a graph database. Database : the Journal of Biological Databases and Curation. 2015. PMID 25754863 DOI: 10.1093/Database/Bau130  0.331
2014 Dammann O, Gray P, Gressens P, Wolkenhauer O, Leviton A. Systems Epidemiology: What’s in a Name? Online Journal of Public Health Informatics. 6. PMID 25598870 DOI: 10.5210/Ojphi.V6I3.5571  0.37
2014 Wolkenhauer O. Pushing limits by embracing complexity. Iet Systems Biology. 8: 244-50. PMID 25478699 DOI: 10.1049/Iet-Syb.2014.0031  0.325
2014 Meier C, Spitschak A, Abshagen K, Gupta S, Mor JM, Wolkenhauer O, Haier J, Vollmar B, Alla V, Pützer BM. Association of RHAMM with E2F1 promotes tumour cell extravasation by transcriptional up-regulation of fibronectin. The Journal of Pathology. 234: 351-64. PMID 25042645 DOI: 10.1002/Path.4400  0.306
2014 Wolkenhauer O, Auffray C, Brass O, Clairambault J, Deutsch A, Drasdo D, Gervasio F, Preziosi L, Maini P, Marciniak-Czochra A, Kossow C, Kuepfer L, Rateitschak K, Ramis-Conde I, Ribba B, et al. Enabling multiscale modeling in systems medicine. Genome Medicine. 6: 21. PMID 25031615 DOI: 10.1186/Gm538  0.307
2014 Khan FM, Schmitz U, Nikolov S, Engelmann D, Pützer BM, Wolkenhauer O, Vera J. Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic. Biochimica Et Biophysica Acta. 1844: 289-98. PMID 23692959 DOI: 10.1016/J.Bbapap.2013.05.007  0.343
2013 Lai X, Bhattacharya A, Schmitz U, Kunz M, Vera J, Wolkenhauer O. A systems' biology approach to study microRNA-mediated gene regulatory networks. Biomed Research International. 2013: 703849. PMID 24350286 DOI: 10.1155/2013/703849  0.347
2013 Evans MR, Grimm V, Johst K, Knuuttila T, de Langhe R, Lessells CM, Merz M, O'Malley MA, Orzack SH, Weisberg M, Wilkinson DJ, Wolkenhauer O, Benton TG. Do simple models lead to generality in ecology? Trends in Ecology & Evolution. 28: 578-83. PMID 23827437 DOI: 10.1016/J.Tree.2013.05.022  0.354
2013 Wolkenhauer O, Green S. The search for organizing principles as a cure against reductionism in systems medicine. The Febs Journal. 280: 5938-48. PMID 23621685 DOI: 10.1111/Febs.12311  0.339
2013 Minoo P, Wolkenhauer O, Guttentag S. Systems biology and pediatric research. Pediatric Research. 73: 499-501. PMID 23545998 DOI: 10.1038/Pr.2013.33  0.304
2013 Jablonsky J, Hagemann M, Schwarz D, Wolkenhauer O. Phosphoglycerate mutases function as reverse regulated isoenzymes in Synechococcus elongatus PCC 7942. Plos One. 8: e58281. PMID 23484009 DOI: 10.1371/Journal.Pone.0058281  0.303
2013 Vera J, Lai X, Schmitz U, Wolkenhauer O. MicroRNA-regulated networks: the perfect storm for classical molecular biology, the ideal scenario for systems biology. Advances in Experimental Medicine and Biology. 774: 55-76. PMID 23377968 DOI: 10.1007/978-94-007-5590-1_4  0.354
2013 Waltemath D, Henkel R, Hälke R, Scharm M, Wolkenhauer O. Improving the reuse of computational models through version control. Bioinformatics (Oxford, England). 29: 742-8. PMID 23335018 DOI: 10.1093/Bioinformatics/Btt018  0.305
2013 Wolkenhauer O, Auffray C, Jaster R, Steinhoff G, Dammann O. The road from systems biology to systems medicine Pediatric Research. 73: 502-507. PMID 23314297 DOI: 10.1038/Pr.2013.4  0.384
2013 Gormley P, Li K, Wolkenhauer O, Irwin GW, Du D. Reverse Engineering of Biochemical Reaction Networks Using Co-evolution with Eng-Genes Cognitive Computation. 5: 106-118. DOI: 10.1007/S12559-012-9159-Y  0.313
2012 Lai X, Wolkenhauer O, Vera J. Modeling miRNA regulation in cancer signaling systems: miR-34a regulation of the p53/Sirt1 signaling module. Methods in Molecular Biology (Clifton, N.J.). 880: 87-108. PMID 23361983 DOI: 10.1007/978-1-61779-833-7_6  0.313
2012 Rateitschak K, Winter F, Lange F, Jaster R, Wolkenhauer O. Parameter identifiability and sensitivity analysis predict targets for enhancement of STAT1 activity in pancreatic cancer and stellate cells. Plos Computational Biology. 8: e1002815. PMID 23284277 DOI: 10.1371/Journal.Pcbi.1002815  0.306
2012 Guebel DV, Schmitz U, Wolkenhauer O, Vera J. Analysis of cell adhesion during early stages of colon cancer based on an extended multi-valued logic approach. Molecular Biosystems. 8: 1230-42. PMID 22298312 DOI: 10.1039/C2Mb05277F  0.311
2012 Wolkenhauer O, Shibata D, Mesarović MD. The role of theorem proving in systems biology Journal of Theoretical Biology. 300: 57-61. PMID 22244914 DOI: 10.1016/J.Jtbi.2011.12.023  0.345
2012 Jones N, Wolkenhauer O. Diagrams as locality aids for explanation and model construction in cell biology Biology and Philosophy. 27: 705-721. DOI: 10.1007/S10539-012-9311-9  0.339
2011 Jablonsky J, Bauwe H, Wolkenhauer O. Modeling the Calvin-Benson cycle. Bmc Systems Biology. 5: 185. PMID 22051069 DOI: 10.1186/1752-0509-5-185  0.323
2011 Vera J, Rateitschak K, Lange F, Kossow C, Wolkenhauer O, Jaster R. Systems biology of JAK-STAT signalling in human malignancies. Progress in Biophysics and Molecular Biology. 106: 426-34. PMID 21762720 DOI: 10.1016/J.Pbiomolbio.2011.06.013  0.377
2011 Bousquet J, Anto JM, Sterk PJ, Adcock IM, Chung KF, Roca J, Agusti A, Brightling C, Cambon-Thomsen A, Cesario A, Abdelhak S, Antonarakis SE, Avignon A, Ballabio A, Baraldi E, ... ... Wolkenhauer O, et al. Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Medicine. 3: 43. PMID 21745417 DOI: 10.1186/Gm259  0.332
2011 Drack M, Wolkenhauer O. System approaches of Weiss and Bertalanffy and their relevance for systems biology today. Seminars in Cancer Biology. 21: 150-5. PMID 21616150 DOI: 10.1016/J.Semcancer.2011.05.001  0.366
2011 Lange F, Rateitschak K, Fitzner B, Pöhland R, Wolkenhauer O, Jaster R. Studies on mechanisms of interferon-gamma action in pancreatic cancer using a data-driven and model-based approach Molecular Cancer. 10: 13-13. PMID 21310022 DOI: 10.1186/1476-4598-10-13  0.308
2011 Millat T, Wolkenhauer O, Fischer R, Bahl H. Modeling of cellular processes: methods, data, and requirements. Methods of Molecular Biology. 696: 429-447. PMID 21063964 DOI: 10.1007/978-1-60761-987-1_27  0.373
2011 Nikolov S, Vera J, Schmitz U, Wolkenhauer O. A model-based strategy to investigate the role of microRNA regulation in cancer signalling networks. Theory in Biosciences = Theorie in Den Biowissenschaften. 130: 55-69. PMID 20809366 DOI: 10.1007/S12064-010-0109-5  0.354
2010 Frey S, Sott K, Smedh M, Millat T, Dahl P, Wolkenhauer O, Goksör M. A mathematical analysis of nuclear intensity dynamics for Mig1-GFP under consideration of bleaching effects and background noise in Saccharomyces cerevisiae. Molecular Biosystems. 7: 215-23. PMID 20967382 DOI: 10.1039/C005305H  0.3
2010 Vera J, Rath O, Balsa-Canto E, Banga JR, Kolch W, Wolkenhauer O. Investigating dynamics of inhibitory and feedback loops in ERK signalling using power-law models Molecular Biosystems. 6: 2174-2191. PMID 20717620 DOI: 10.1039/C0Mb00018C  0.353
2010 Liebal UW, Millat T, De Jong IG, Kuipers OP, Völker U, Wolkenhauer O. How mathematical modelling elucidates signalling in Bacillus subtilis. Molecular Microbiology. 77: 1083-95. PMID 20624218 DOI: 10.1111/J.1365-2958.2010.07283.X  0.366
2010 Wolkenhauer O, Auffray C, Baltrusch S, Blüthgen N, Byrne H, Cascante M, Ciliberto A, Dale T, Drasdo D, Fell D, Ferrell JE, Gallahan D, Gatenby R, Günther U, Harms BD, et al. Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research. 70: 12-3. PMID 20028868 DOI: 10.1158/0008-5472.Can-09-2676  0.347
2010 Vera J, Schultz J, Ibrahim S, Raatz Y, Wolkenhauer O, Kunz M. Dynamical effects of epigenetic silencing of 14-3-3sigma expression. Molecular Biosystems. 6: 264-73. PMID 20024089 DOI: 10.1039/B907863K  0.304
2010 Rateitschak K, Karger A, Fitzner B, Lange F, Wolkenhauer O, Jaster R. Mathematical modelling of interferon-γ signalling in pancreatic stellate cells reflects and predicts the dynamics of STAT1 pathway activity Cellular Signalling. 22: 97-105. PMID 19781632 DOI: 10.1016/J.Cellsig.2009.09.019  0.342
2010 Nikolov S, Lai X, Liebal UW, Wolkenhauer O, Vera J. Integration of sensitivity and bifurcation analysis to detect critical processes in a model combining signalling and cell population dynamics International Journal of Systems Science. 41: 81-105. DOI: 10.1080/00207720903147746  0.347
2009 Lai X, Nikolov S, Wolkenhauer O, Vera J. A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis Computational Biology and Chemistry. 33: 312-324. PMID 19660986 DOI: 10.1016/J.Compbiolchem.2009.07.003  0.324
2009 Ullah M, Wolkenhauer O. Investigating the two-moment characterisation of subcellular biochemical networks. Journal of Theoretical Biology. 260: 340-352. PMID 19500597 DOI: 10.1016/J.Jtbi.2009.05.022  0.315
2009 Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I. SysBioMed report: advancing systems biology for medical applications. Iet Systems Biology. 3: 131-6. PMID 19449974 DOI: 10.1049/Iet-Syb.2009.0005  0.42
2009 Aebersold R, Auffray C, Baney E, Barillot E, Brazma A, Brett C, Brunak S, Butte A, Califano A, Celis J, Cufer T, Ferrell J, Galas D, Gallahan D, Gatenby R, ... ... Wolkenhauer O, et al. Report on EU-USA workshop: how systems biology can advance cancer research (27 October 2008). Molecular Oncology. 3: 9-17. PMID 19383362 DOI: 10.1016/J.Molonc.2008.11.003  0.357
2009 Wolkenhauer O, Lao A, Omholt S, Martens H. Systems approaches in molecular and cell biology: making sense out of data and providing meaning to models Proceedings of Spie. 7343: 734318. DOI: 10.1117/12.822742  0.378
2008 Vera J, Wolkenhauer O. A system biology approach to understand functional activity of cell communication systems. Methods in Cell Biology. 90: 399-415. PMID 19195559 DOI: 10.1016/S0091-679X(08)00817-0  0.375
2008 Vera J, Millat T, Kolch W, Wolkenhauer O. Dynamics of receptor and protein transducer homodimerisation. Bmc Systems Biology. 2: 92-92. PMID 18976473 DOI: 10.1186/1752-0509-2-92  0.303
2007 Ullah M, Wolkenhauer O. Family tree of Markov models in systems biology Iet Systems Biology. 1: 247-254. PMID 17708432 DOI: 10.1049/Iet-Syb:20070017  0.335
2007 Wolkenhauer O. Essay: Defining Systems Biology: An Engineering Perspective Iet Systems Biology. 1: 204-206. PMID 17708427 DOI: 10.1049/Iet-Syb:20079017  0.313
2007 Vera J, Sun C, Oertel Y, Wolkenhauer O. PLMaddon: a power-law module for the Matlab SBToolbox. Bioinformatics. 23: 2638-2640. PMID 17495997 DOI: 10.1093/Bioinformatics/Btm245  0.301
2007 Vera J, Balsa-Canto E, Wellstead P, Banga JR, Wolkenhauer O. Power-law models of signal transduction pathways Cellular Signalling. 19: 1531-1541. PMID 17399948 DOI: 10.1016/J.Cellsig.2007.01.029  0.326
2007 Schmidt H, Drews G, Vera J, Wolkenhauer O. SBML export interface for the systems biology toolbox for MATLAB Bioinformatics. 23: 1297-1298. PMID 17384017 DOI: 10.1093/Bioinformatics/Btm105  0.328
2007 Wolkenhauer O, Hofmeyr JH. An abstract cell model that describes the self-organization of cell function in living systems. Journal of Theoretical Biology. 246: 461-76. PMID 17328919 DOI: 10.1016/J.Jtbi.2007.01.005  0.364
2007 Assmus HE, Herwig R, Cho KH, Wolkenhauer O. Dynamics of biological systems: role of systems biology in medical research. Expert Review of Molecular Diagnostics. 6: 891-902. PMID 17140376 DOI: 10.1586/14737159.6.6.891  0.388
2007 Millat T, Bullinger E, Rohwer J, Wolkenhauer O. Approximations and their consequences for dynamic modelling of signal transduction pathways. Mathematical Biosciences. 207: 40-57. PMID 17070871 DOI: 10.1016/J.Mbs.2006.08.012  0.33
2007 Rateitschak K, Wolkenhauer O. Intracellular delay limits cyclic changes in gene expression Bellman Prize in Mathematical Biosciences. 205: 163-179. PMID 17027040 DOI: 10.1016/J.Mbs.2006.08.010  0.322
2007 Wolkenhauer O. Stochastic Modeling for Systems Biology edited by D. J. Wilkinson Biometrics. 63: 627-628. DOI: 10.1111/J.1541-0420.2006.00787_4.X  0.31
2006 Shin SY, Choo SM, Kim D, Baek SJ, Wolkenhauer O, Cho KH. Switching feedback mechanisms realize the dual role of MCIP in the regulation of calcineurin activity. Febs Letters. 580: 5965-73. PMID 17046757 DOI: 10.1016/J.Febslet.2006.09.064  0.301
2005 Wolkenhauer O, Mesarovic M. Feedback dynamics and cell function: Why systems biology is called Systems Biology. Molecular Biosystems. 1: 14-6. PMID 16880959 DOI: 10.1039/B502088N  0.383
2005 Cho K, Choo S, Wellstead P, Wolkenhauer O. A unified framework for unraveling the functional interaction structure of a biomolecular network based on stimulus-response experimental data. Febs Letters. 579: 4520-4528. PMID 16083880 DOI: 10.1016/J.Febslet.2005.07.025  0.314
2005 Wolkenhauer O, Sreenath SN, Wellstead P, Ullah M, Cho KH. A systems- and signal-oriented approach to intracellular dynamics. Biochemical Society Transactions. 33: 507-15. PMID 15916553 DOI: 10.1042/Bst0330507  0.393
2005 Cho KH, Johansson KH, Wolkenhauer O. A hybrid systems framework for cellular processes Biosystems. 80: 273-282. PMID 15888342 DOI: 10.1016/J.Biosystems.2004.12.002  0.368
2005 Wolkenhauer O, Ullah M, Wellstead P, Cho KH. The dynamic systems approach to control and regulation of intracellular networks. Febs Letters. 579: 1846-53. PMID 15763562 DOI: 10.1016/J.Febslet.2005.02.008  0.381
2005 Kutalik Z, Cho KH, Wolkenhauer O. Optimal sampling time selection for parameter estimation in dynamic pathway modeling. Bio Systems. 75: 43-55. PMID 15245803 DOI: 10.1016/J.Biosystems.2004.03.007  0.343
2004 Wolkenhauer O, Ullah M, Kolch W, Cho K. Modeling and simulation of intracellular dynamics: choosing an appropriate framework Ieee Transactions On Nanobioscience. 3: 200-207. PMID 15473072 DOI: 10.1109/Tnb.2004.833694  0.321
2004 Hackl H, Sanchez Cabo F, Sturn A, Wolkenhauer O, Trajanoski Z. Analysis of DNA microarray data. Current Topics in Medicinal Chemistry. 4: 1357-70. PMID 15379650 DOI: 10.2174/1568026043387773  0.31
2003 Cho KH, Wolkenhauer O. Analysis and modelling of signal transduction pathways in systems biology Biochemical Society Transactions. 31: 1503-1509. PMID 14641099 DOI: 10.1042/Bst0311503  0.392
2003 Cho KH, Shin SY, Lee HW, Wolkenhauer O. Investigations into the analysis and modeling of the TNF alpha-mediated NF-kappa B-signaling pathway. Genome Research. 13: 2413-22. PMID 14559780 DOI: 10.1101/Gr.1195703  0.312
2003 Wolkenhauer O, Kitano H, Cho KH. Systems biology Ieee Control Systems Magazine. 23: 38-48. DOI: 10.1109/Mcs.2003.1213602  0.367
2002 Wolkenhauer O. Mathematical modelling in the post-genome era: understanding genome expression and regulation--a system theoretic approach. Biosystems. 65: 1-18. PMID 11888659 DOI: 10.1016/S0303-2647(02)00004-7  0.367
2001 Wolkenhauer O. Systems biology: The reincarnation of systems theory applied in biology? Briefings in Bioinformatics. 2: 258-270. PMID 11589586 DOI: 10.1093/Bib/2.3.258  0.361
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