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James A Coffman - Publications

Affiliations: 
MDI Biological Laboratory 
Area:
Neuroendocrine system, glucocorticoid receptor, HPA axis
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hartig EI, Zhu S, King BL, Coffman JA. Chronic cortisol exposure in early development leads to neuroendocrine dysregulation in adulthood. Bmc Research Notes. 13: 366. PMID 32746894 DOI: 10.1186/S13104-020-05208-W  0.326
2020 Gans I, Hartig EI, Zhu S, Tilden AR, Hutchins LN, Maki NJ, Graber JH, Coffman JA. Klf9 is a key feedforward regulator of the transcriptomic response to glucocorticoid receptor activity. Scientific Reports. 10: 11415. PMID 32651405 DOI: 10.1038/S41598-020-68040-Z  0.343
2020 Gans IM, Hartig EI, Tilden AR, Graber JH, Coffman J. SUN-LB40 Chronic Cortisol Works Through the Transcription Factor KLF9 to Deregulate Immune Response and Metabolism Journal of the Endocrine Society. 4. DOI: 10.1210/Jendso/Bvaa046.2322  0.346
2019 Coffman JA, Su YH. Redox regulation of development and regeneration. Current Opinion in Genetics & Development. 57: 9-15. PMID 31302472 DOI: 10.1016/J.Gde.2019.06.002  0.633
2016 Hartig EI, Zhu S, King BL, Coffman JA. Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation. Biology Open. PMID 27444789 DOI: 10.1242/Bio.020065  0.36
2016 Rizzo F, Coffman JA, Arnone MI. An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo. Developmental Biology. 416: 173-186. PMID 27235147 DOI: 10.1016/J.Ydbio.2016.05.026  0.375
2015 Arenas-Mena C, Coffman JA. Developmental control of transcriptional and proliferative potency during the evolutionary emergence of animals. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 244: 1193-201. PMID 26173445 DOI: 10.1002/Dvdy.24305  0.427
2015 Carrier TJ, King BL, Coffman JA. Gene Expression Changes Associated With the Developmental Plasticity of Sea Urchin Larvae in Response to Food Availability. The Biological Bulletin. 228: 171-80. PMID 26124444 DOI: 10.1086/Bblv228N3P171  0.379
2014 Coffman JA, Wessels A, DeSchiffart C, Rydlizky K. Oral-aboral axis specification in the sea urchin embryo, IV: hypoxia radializes embryos by preventing the initial spatialization of nodal activity. Developmental Biology. 386: 302-7. PMID 24384388 DOI: 10.1016/J.Ydbio.2013.12.035  0.373
2013 McCarty CM, Coffman JA. Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus. Biochemical and Biophysical Research Communications. 440: 413-8. PMID 24090975 DOI: 10.1016/J.Bbrc.2013.09.094  0.368
2013 Robertson AJ, Coluccio A, Jensen S, Rydlizky K, Coffman JA. Sea urchin akt activity is Runx-dependent and required for post-cleavage stage cell division. Biology Open. 2: 472-8. PMID 23789095 DOI: 10.1242/Bio.20133913  0.471
2011 Ertl RP, Robertson AJ, Saunders D, Coffman JA. Nodal-mediated epigenesis requires dynamin-mediated endocytosis. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 240: 704-11. PMID 21337468 DOI: 10.1002/Dvdy.22557  0.378
2011 Coffman JA. Information as a Manifestation of Development Information-An International Interdisciplinary Journal. 2: 102-116. DOI: 10.3390/Info2010102  0.304
2009 Coffman JA. Mitochondria and metazoan epigenesis. Seminars in Cell & Developmental Biology. 20: 321-9. PMID 19429498 DOI: 10.1016/J.Semcdb.2009.02.002  0.39
2009 Robertson AJ, Larroux C, Degnan BM, Coffman JA. The evolution of Runx genes II. The C-terminal Groucho recruitment motif is present in both eumetazoans and homoscleromorphs but absent in a haplosclerid demosponge. Bmc Research Notes. 2: 59. PMID 19374764 DOI: 10.1186/1756-0500-2-59  0.407
2009 Coffman JA. Is Runx a linchpin for developmental signaling in metazoans? Journal of Cellular Biochemistry. 107: 194-202. PMID 19330799 DOI: 10.1002/Jcb.22143  0.448
2009 Coffman JA, Coluccio A, Planchart A, Robertson AJ. Oral-aboral axis specification in the sea urchin embryo III. Role of mitochondrial redox signaling via H2O2. Developmental Biology. 330: 123-30. PMID 19328778 DOI: 10.1016/J.Ydbio.2009.03.017  0.308
2008 Robertson AJ, Coluccio A, Knowlton P, Dickey-Sims C, Coffman JA. Runx expression is mitogenic and mutually linked to Wnt activity in blastula-stage sea urchin embryos. Plos One. 3: e3770. PMID 19020668 DOI: 10.1371/Journal.Pone.0003770  0.449
2007 Coffman JA, Denegre JM. Mitochondria, redox signaling and axis specification in metazoan embryos. Developmental Biology. 308: 266-80. PMID 17586486 DOI: 10.1016/J.Ydbio.2007.05.042  0.36
2007 Nam J, Su YH, Lee PY, Robertson AJ, Coffman JA, Davidson EH. Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network. Developmental Biology. 306: 860-9. PMID 17451671 DOI: 10.1016/J.Ydbio.2007.03.033  0.724
2006 Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, et al. The genome of the sea urchin Strongylocentrotus purpuratus. Science (New York, N.Y.). 314: 941-52. PMID 17095691 DOI: 10.1126/Science.1133609  0.55
2006 Byrum CA, Walton KD, Robertson AJ, Carbonneau S, Thomason RT, Coffman JA, McClay DR. Protein tyrosine and serine-threonine phosphatases in the sea urchin, Strongylocentrotus purpuratus: identification and potential functions. Developmental Biology. 300: 194-218. PMID 17087928 DOI: 10.1016/J.Ydbio.2006.08.050  0.407
2006 Fernandez-Guerra A, Aze A, Morales J, Mulner-Lorillon O, Cosson B, Cormier P, Bradham C, Adams N, Robertson AJ, Marzluff WF, Coffman JA, Genevière AM. The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus Developmental Biology. 300: 238-251. PMID 17078944 DOI: 10.1016/J.Ydbio.2006.09.012  0.409
2006 Bradham CA, Foltz KR, Beane WS, Arnone MI, Rizzo F, Coffman JA, Mushegian A, Goel M, Morales J, Geneviere AM, Lapraz F, Robertson AJ, Kelkar H, Loza-Coll M, Townley IK, et al. The sea urchin kinome: a first look. Developmental Biology. 300: 180-93. PMID 17027740 DOI: 10.1016/J.Ydbio.2006.08.074  0.356
2006 Robertson AJ, Croce J, Carbonneau S, Voronina E, Miranda E, McClay DR, Coffman JA. The genomic underpinnings of apoptosis in Strongylocentrotus purpuratus. Developmental Biology. 300: 321-34. PMID 17010332 DOI: 10.1016/J.Ydbio.2006.08.053  0.35
2006 Robertson AJ, Dickey-Sims C, Ransick A, Rupp DE, McCarthy JJ, Coffman JA. CBFβ is a facultative Runx partner in the sea urchin embryo Bmc Biology. 4. PMID 16469111 DOI: 10.1186/1741-7007-4-4  0.402
2006 Coffman JA. Developmental Ascendency: From Bottom-up to Top-down Control Biological Theory. 1: 165-178. DOI: 10.1162/Biot.2006.1.2.165  0.348
2005 Dickey-Sims C, Robertson AJ, Rupp DE, McCarthy JJ, Coffman JA. Runx-dependent expression of PKC is critical for cell survival in the sea urchin embryo Bmc Biology. 3. PMID 16076398 DOI: 10.1186/1741-7007-3-18  0.348
2005 Stewart PL, Makabi M, Lang J, Dickey-Sims C, Robertson AJ, Coffman JA, Suprenant KA. Sea urchin vault structure, composition, and differential localization during development. Bmc Developmental Biology. 5: 3. PMID 15710043 DOI: 10.1186/1471-213X-5-3  0.309
2004 Coffman JA, Yuh CH. Identification of sequence-specific DNA binding proteins. Methods in Cell Biology. 74: 653-75. PMID 15575625 DOI: 10.1016/S0091-679X(04)74026-1  0.439
2004 Coffman JA, McCarthy JJ, Dickey-Sims C, Robertson AJ. Oral-aboral axis specification in the sea urchin embryo: II. Mitochondrial distribution and redox state contribute to establishing polarity in Strongylocentrotus purpuratus Developmental Biology. 273: 160-171. PMID 15302605 DOI: 10.1016/J.Ydbio.2004.06.005  0.33
2004 Coffman JA, Dickey-Sims C, Haug JS, McCarthy JJ, Robertson AA. Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene Bmc Biology. 2. PMID 15132741 DOI: 10.1186/1741-7007-2-6  0.431
2003 Coffman JA. Runx transcription factors and the developmental balance between cell proliferation and differentiation. Cell Biology International. 27: 315-24. PMID 12788047 DOI: 10.1016/S1065-6995(03)00018-0  0.441
2003 Rennert J, Coffman JA, Mushegian AR, Robertson AJ. The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms. Bmc Evolutionary Biology. 3: 4. PMID 12659662 DOI: 10.1186/1471-2148-3-4  0.442
2002 Robertson AJ, Dickey CE, McCarthy JJ, Coffman JA. The expression of SpRunt during sea urchin embryogenesis Mechanisms of Development. 117: 327-330. PMID 12204279 DOI: 10.1016/S0925-4773(02)00201-0  0.438
2001 Coffman JA, Davidson EH. Oral-aboral axis specification in the sea urchin embryo. I. Axis entrainment by respiratory asymmetry. Developmental Biology. 230: 18-28. PMID 11161559 DOI: 10.1006/Dbio.2000.9996  0.523
2000 Coffman JA, Leahy PS. Large-Scale Culture and Preparation of Sea Urchin Embryos for Isolation of Transcriptional Regulatory Proteins Methods of Molecular Biology. 135: 17-23. PMID 10791300 DOI: 10.1385/1-59259-685-1:17  0.312
1996 Coffman JA, Kirchhamer CV, Harrington MG, Davidson EH. SpRunt-1, a new member of the runt domain family of transcription factors, is a positive regulator of the aboral ectoderm-specific CyIIIA gene in sea urchin embryos. Developmental Biology. 174: 43-54. PMID 8626020 DOI: 10.1006/Dbio.1996.0050  0.572
1996 Coffman JA, Rai R, Cunningham T, Svetlov V, Cooper TG. Gat1p, a GATA family protein whose production is sensitive to nitrogen catabolite repression, participates in transcriptional activation of nitrogen-catabolic genes in Saccharomyces cerevisiae. Molecular and Cellular Biology. 16: 847-58. PMID 8622686 DOI: 10.1128/Mcb.16.3.847  0.301
1995 Zeller RW, Coffman JA, Harrington MG, Britten RJ, Davidson EH. SpGCF1, a sea urchin embryo DNA-binding protein, exists as five nested variants encoded by a single mRNA. Developmental Biology. 169: 713-27. PMID 7781910 DOI: 10.1006/Dbio.1995.1181  0.516
1995 Coffman JA, Rai R, Cooper TG. Genetic evidence for Gln3p-independent, nitrogen catabolite repression- sensitive gene expression in Saccharomyces cerevisiae Journal of Bacteriology. 177: 6910-6918. PMID 7592485 DOI: 10.1128/Jb.177.23.6910-6918.1995  0.303
1994 Coffman JA, Davidson EH. Regulation of gene expression in the sea urchin embryo Journal of the Marine Biological Association of the United Kingdom. 74: 17-26. DOI: 10.1017/S0025315400035621  0.579
1993 Char BR, Bell JR, Dovala J, Coffman JA, Harrington MG, Becerra JC, Davidson EH, Calzone FJ, Maxson R. SpOct, a gene encoding the major octamer-binding protein in sea urchin embryos: expression profile, evolutionary relationships, and DNA binding of expressed protein. Developmental Biology. 158: 350-63. PMID 8344456 DOI: 10.1006/Dbio.1993.1194  0.555
1992 Coffman JA, Davidson EH. Expression of spatially regulated genes in the sea urchin embryo. Current Opinion in Genetics & Development. 2: 260-8. PMID 1638121 DOI: 10.1016/S0959-437X(05)80283-7  0.585
1992 Harrington MG, Coffman JA, Calzone FJ, Hood LE, Britten RJ, Davidson EH. Complexity of sea urchin embryo nuclear proteins that contain basic domains. Proceedings of the National Academy of Sciences of the United States of America. 89: 6252-6. PMID 1631117 DOI: 10.1073/Pnas.89.14.6252  0.489
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