Year |
Citation |
Score |
2021 |
Park J, Zuo H, Frangaj A, Fu Z, Yen LY, Zhang Z, Mosyak L, Slavkovich VN, Liu J, Ray KM, Cao B, Vallese F, Geng Y, Chen S, Grassucci R, ... ... Frank J, et al. Symmetric activation and modulation of the human calcium-sensing receptor. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34916296 DOI: 10.1073/pnas.2115849118 |
0.711 |
|
2020 |
Dashti A, Mashayekhi G, Shekhar M, Ben Hail D, Salah S, Schwander P, des Georges A, Singharoy A, Frank J, Ourmazd A. Retrieving functional pathways of biomolecules from single-particle snapshots. Nature Communications. 11: 4734. PMID 32948759 DOI: 10.1038/S41467-020-18403-X |
0.747 |
|
2020 |
Washburn RS, Zuber PK, Sun M, Hashem Y, Shen B, Li W, Harvey S, Acosta Reyes FJ, Gottesman ME, Knauer SH, Frank J. Escherichia coli NusG Links the Lead Ribosome with the Transcription Elongation Complex. Iscience. 23: 101352. PMID 32726726 DOI: 10.1016/J.Isci.2020.101352 |
0.379 |
|
2020 |
Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, ... ... Frank J, et al. Author Correction: Structure of human GABA receptor in an inactive state. Nature. PMID 32665714 DOI: 10.1038/S41586-020-2543-Y |
0.716 |
|
2020 |
Park J, Fu Z, Frangaj A, Liu J, Mosyak L, Shen T, Slavkovich VN, Ray KM, Taura J, Cao B, Geng Y, Zuo H, Kou Y, Grassucci R, Chen S, ... ... Frank J, et al. Structure of human GABA receptor in an inactive state. Nature. PMID 32581365 DOI: 10.1038/S41586-020-2452-0 |
0.736 |
|
2020 |
Zheng X, Fu Z, Su D, Zhang Y, Li M, Pan Y, Li H, Li S, Grassucci RA, Ren Z, Hu Z, Li X, Zhou M, Li G, Frank J, et al. Mechanism of ligand activation of a eukaryotic cyclic nucleotide-gated channel. Nature Structural & Molecular Biology. PMID 32483338 DOI: 10.1038/S41594-020-0433-5 |
0.738 |
|
2020 |
Carter SD, Hampton CM, Langlois R, Melero R, Farino ZJ, Calderon MJ, Li W, Wallace CT, Tran NH, Grassucci RA, Siegmund SE, Pemberton J, Morgenstern TJ, Eisenman L, Aguilar JI, ... ... Frank J, et al. Ribosome-associated vesicles: A dynamic subcompartment of the endoplasmic reticulum in secretory cells. Science Advances. 6: eaay9572. PMID 32270040 DOI: 10.1126/Sciadv.Aay9572 |
0.77 |
|
2019 |
Acosta-Reyes F, Neupane R, Frank J, Fernández IS. The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs. The Embo Journal. e102226. PMID 31609474 DOI: 10.15252/Embj.2019102226 |
0.363 |
|
2019 |
Fu Z, Indrisiunaite G, Kaledhonkar S, Shah B, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J. The structural basis for release-factor activation during translation termination revealed by time-resolved cryogenic electron microscopy. Nature Communications. 10: 2579. PMID 31189921 DOI: 10.1016/J.Bpj.2018.11.3090 |
0.764 |
|
2019 |
Kaledhonkar S, Fu Z, Caban K, Li W, Chen B, Sun M, Gonzalez RL, Frank J. Late steps in bacterial translation initiation visualized using time-resolved cryo-EM. Nature. PMID 31108498 DOI: 10.1038/S41586-019-1249-5 |
0.752 |
|
2018 |
Qiu W, Fu Z, Xu GG, Grassucci RA, Zhang Y, Frank J, Hendrickson WA, Guo Y. Structure and activity of lipid bilayer within a membrane-protein transporter. Proceedings of the National Academy of Sciences of the United States of America. 115: 12985-12990. PMID 30509977 DOI: 10.1073/pnas.1812526115 |
0.733 |
|
2018 |
Gerbasi VR, Browne CM, Samir P, Shen B, Sun M, Hazelbaker DZ, Galassie AC, Frank J, Link AJ. Critical Role for Saccharomyces cerevisiae Asc1p in Translational Initiation at Elevated Temperatures. Proteomics. e1800208. PMID 30285306 DOI: 10.1002/Pmic.201800208 |
0.325 |
|
2018 |
Wang J, Liu Z, Crabtree RH, Frank J, Moore PB. On the damage done to the structure of the T. acidophilum proteasome by electron radiation. Protein Science : a Publication of the Protein Society. PMID 30242932 DOI: 10.1002/Pro.3511 |
0.336 |
|
2018 |
Samir P, Brown CM, Rahul R, Sun M, Shen B, Li W, Frank J, Link AJ. Identification of Changing Ribosome Protein Compositions using Mass Spectrometry. Proteomics. e1800217. PMID 30211483 DOI: 10.1002/Pmic.201800217 |
0.304 |
|
2018 |
Frank J. Single-Particle Reconstruction of Biological Molecules-Story in a Sample (Nobel Lecture). Angewandte Chemie (International Ed. in English). PMID 29978534 DOI: 10.1002/Anie.201802770 |
0.318 |
|
2018 |
Jobe A, Liu Z, Gutierrez-Vargas C, Frank J. New Insights into Ribosome Structure and Function. Cold Spring Harbor Perspectives in Biology. PMID 29903714 DOI: 10.1101/Cshperspect.A032615 |
0.368 |
|
2018 |
Fislage M, Zhang J, Brown ZP, Mandava CS, Sanyal S, Ehrenberg M, Frank J. Cryo-EM shows stages of initial codon selection on the ribosome by aa-tRNA in ternary complex with GTP and the GTPase-deficient EF-TuH84A. Nucleic Acids Research. PMID 29733411 DOI: 10.1093/Nar/Gky346 |
0.358 |
|
2018 |
Kaledhonkar S, Fu Z, White H, Frank J. Time-Resolved Cryo-electron Microscopy Using a Microfluidic Chip. Methods in Molecular Biology (Clifton, N.J.). 1764: 59-71. PMID 29605908 DOI: 10.1007/978-1-4939-7759-8_4 |
0.749 |
|
2018 |
Hashem Y, Frank J. The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process. Annual Review of Biophysics. PMID 29494255 DOI: 10.1146/Annurev-Biophys-070816-034034 |
0.33 |
|
2018 |
Santulli G, Lewis D, des Georges A, Marks AR, Frank J. Ryanodine Receptor Structure and Function in Health and Disease. Sub-Cellular Biochemistry. 87: 329-352. PMID 29464565 DOI: 10.1007/978-981-10-7757-9_11 |
0.727 |
|
2018 |
Caban K, Pavlov M, Kaledhonkar S, Fu Z, Frank J, Ehrenberg M, Gonzalez RL. The Structural Basis for Initiation Factor 2 Activation during Translation Initiation Biophysical Journal. 114: 593a. DOI: 10.1016/J.Bpj.2017.11.3243 |
0.738 |
|
2018 |
Qiu W, Fu Z, Xu G, Grassucci RA, Hendrickson WA, Zhang Y, Frank J, Guo Y. Lipid Bilayer Structure in Native Cell Membrane Nanoparticles of Multidrug Exporter ACRB Biophysical Journal. 114: 369a-370a. DOI: 10.1016/J.Bpj.2017.11.2048 |
0.71 |
|
2017 |
Twomey EC, Yelshanskaya MV, Grassucci RA, Frank J, Sobolevsky AI. Channel opening and gating mechanism in AMPA-subtype glutamate receptors. Nature. PMID 28737760 DOI: 10.1038/Nature23479 |
0.773 |
|
2017 |
Frank J. Time-resolved Cryo-Electron Microscopy: Recent Progress. Journal of Structural Biology. PMID 28625887 DOI: 10.1016/J.Jsb.2017.06.005 |
0.332 |
|
2017 |
Twomey EC, Yelshanskaya MV, Grassucci RA, Frank J, Sobolevsky AI. Structural Bases of Desensitization in AMPA Receptor-Auxiliary Subunit Complexes. Neuron. 94: 569-580.e5. PMID 28472657 DOI: 10.1016/J.Neuron.2017.04.025 |
0.802 |
|
2017 |
Frank J. The mechanism of translation. F1000research. 6: 198. PMID 28344776 DOI: 10.12688/F1000Research.9760.1 |
0.372 |
|
2017 |
Feng X, Fu Z, Kaledhonkar S, Jia Y, Shah B, Jin A, Liu Z, Sun M, Chen B, Grassucci RA, Ren Y, Jiang H, Frank J, Lin Q. A Fast and Effective Microfluidic Spraying-Plunging Method for High-Resolution Single-Particle Cryo-EM. Structure (London, England : 1993). PMID 28286002 DOI: 10.1016/J.Str.2017.02.005 |
0.734 |
|
2017 |
Maji S, Shahoei R, Schulten K, Frank J. Quantitative Characterization of Domain Motions in Molecular Machines. The Journal of Physical Chemistry. B. PMID 28199113 DOI: 10.1021/Acs.Jpcb.6B10732 |
0.453 |
|
2017 |
Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW. Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis. The Embo Journal. PMID 28179369 DOI: 10.15252/Embj.201696012 |
0.396 |
|
2017 |
Frank J. The translation elongation cycle-capturing multiple states by cryo-electron microscopy. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 372. PMID 28138066 DOI: 10.1098/Rstb.2016.0180 |
0.376 |
|
2017 |
Frank J. Advances in the field of single-particle cryo-electron microscopy over the last decade. Nature Protocols. 12: 209-212. PMID 28055037 DOI: 10.1038/Nprot.2017.004 |
0.359 |
|
2017 |
Georges Ad, Clarke OB, Zalk R, Yuan Q, Condon KJ, Grassucci RA, Hendrickson WA, Marks AR, Frank J. Functional Study of the Ryanodine Receptor Type 1 using Cryo-Electron Microscopy Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1813 |
0.384 |
|
2016 |
Fu Z, Kaledhonkar S, Borg A, Sun M, Chen B, Grassucci RA, Ehrenberg M, Frank J. Key Intermediates in Ribosome Recycling Visualized by Time-Resolved Cryoelectron Microscopy. Structure (London, England : 1993). PMID 27818103 DOI: 10.1016/J.Str.2016.09.014 |
0.768 |
|
2016 |
Liu Z, Gutierrez-Vargas C, Wei J, Grassucci RA, Ramesh M, Espina N, Sun M, Tutuncuoglu B, Madison-Antenucci S, Woolford JL, Tong L, Frank J. Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit. Proceedings of the National Academy of Sciences of the United States of America. 113: 12174-12179. PMID 27791004 DOI: 10.1073/Pnas.1614594113 |
0.39 |
|
2016 |
Liu Z, Gutierrez-Vargas C, Wei J, Grassucci RA, Espina N, Madison-Antenucci S, Tong L, Frank J. Determination of the ribosome structure to a resolution of 2.5 Å by single-particle cryo-EM. Protein Science : a Publication of the Protein Society. PMID 27750394 DOI: 10.1002/Pro.3068 |
0.365 |
|
2016 |
des Georges A, Clarke OB, Zalk R, Yuan Q, Condon KJ, Grassucci RA, Hendrickson WA, Marks AR, Frank J. Structural Basis for Gating and Activation of RyR1. Cell. 167: 145-157.e17. PMID 27662087 DOI: 10.1016/J.Cell.2016.08.075 |
0.734 |
|
2016 |
Chen Y, Clarke OB, Kim J, Stowe S, Kim YK, Assur Z, Cavalier M, Godoy-Ruiz R, von Alpen DC, Manzini C, Blaner WS, Frank J, Quadro L, Weber DJ, Shapiro L, et al. Structure of the STRA6 receptor for retinol uptake. Science (New York, N.Y.). 353. PMID 27563101 DOI: 10.1126/Science.Aad8266 |
0.343 |
|
2016 |
Twomey EC, Yelshanskaya MV, Grassucci RA, Frank J, Sobolevsky AI. Elucidation of AMPA receptor-stargazin complexes by cryo-electron microscopy. Science (New York, N.Y.). 353: 83-6. PMID 27365450 DOI: 10.1126/Science.Aaf8411 |
0.797 |
|
2016 |
Frank J. Whither ribosome structure and dynamics research? (A Perspective). Journal of Molecular Biology. PMID 27178840 DOI: 10.1016/J.Jmb.2016.04.034 |
0.356 |
|
2016 |
Frank J, Ourmazd A. Continuous Changes in Structure Mapped by Manifold Embedding of Single-Particle Data in Cryo-EM. Methods (San Diego, Calif.). PMID 26884261 DOI: 10.1016/J.Ymeth.2016.02.007 |
0.375 |
|
2015 |
Chen B, Frank J. Two promising future developments of cryo-EM: capturing short-lived states and mapping a continuum of states of a macromolecule. Microscopy (Oxford, England). PMID 26520784 DOI: 10.1093/Jmicro/Dfv344 |
0.3 |
|
2015 |
Sun M, Li W, Blomqvist K, Das S, Hashem Y, Dvorin JD, Frank J. Dynamical features of the Plasmodium falciparum ribosome during translation. Nucleic Acids Research. PMID 26432834 DOI: 10.1093/Nar/Gkv991 |
0.347 |
|
2015 |
des Georges A, Dhote V, Kuhn L, Hellen CU, Pestova TV, Frank J, Hashem Y. Structure of mammalian eIF3 in the context of the 43S preinitiation complex. Nature. 525: 491-5. PMID 26344199 DOI: 10.1038/Nature14891 |
0.771 |
|
2015 |
Li W, Liu Z, Koripella RK, Langlois R, Sanyal S, Frank J. Activation of GTP hydrolysis in mRNA-tRNA translocation by elongation factor G. Science Advances. 1. PMID 26229983 DOI: 10.1126/Sciadv.1500169 |
0.361 |
|
2015 |
Chen B, Kaledhonkar S, Sun M, Shen B, Lu Z, Barnard D, Lu TM, Gonzalez RL, Frank J. Structural dynamics of ribosome subunit association studied by mixing-spraying time-resolved cryogenic electron microscopy. Structure (London, England : 1993). 23: 1097-105. PMID 26004440 DOI: 10.1016/J.Str.2015.04.007 |
0.373 |
|
2015 |
Liao HY, Hashem Y, Frank J. Efficient estimation of three-dimensional covariance and its application in the analysis of heterogeneous samples in cryo-electron microscopy. Structure (London, England : 1993). 23: 1129-37. PMID 25982529 DOI: 10.1016/J.Str.2015.04.004 |
0.365 |
|
2015 |
Marabini R, Carragher B, Chen S, Chen J, Cheng A, Downing KH, Frank J, Grassucci RA, Bernard Heymann J, Jiang W, Jonic S, Liao HY, Ludtke SJ, Patwari S, Piotrowski AL, et al. CTF Challenge: Result summary. Journal of Structural Biology. 190: 348-59. PMID 25913484 DOI: 10.1016/J.Jsb.2015.04.003 |
0.778 |
|
2015 |
Kinz-Thompson CD, Sharma AK, Frank J, Gonzalez RL, Chowdhury D. Quantitative Connection between Ensemble Thermodynamics and Single-Molecule Kinetics: A Case Study Using Cryogenic Electron Microscopy and Single-Molecule Fluorescence Resonance Energy Transfer Investigations of the Ribosome. The Journal of Physical Chemistry. B. PMID 25785884 DOI: 10.1021/Jp5128805 |
0.311 |
|
2015 |
Zalk R, Clarke OB, des Georges A, Grassucci RA, Reiken S, Mancia F, Hendrickson WA, Frank J, Marks AR. Structure of a mammalian ryanodine receptor. Nature. 517: 44-9. PMID 25470061 DOI: 10.1038/Nature13950 |
0.737 |
|
2014 |
Dashti A, Schwander P, Langlois R, Fung R, Li W, Hosseinizadeh A, Liao HY, Pallesen J, Sharma G, Stupina VA, Simon AE, Dinman JD, Frank J, Ourmazd A. Trajectories of the ribosome as a Brownian nanomachine. Proceedings of the National Academy of Sciences of the United States of America. 111: 17492-7. PMID 25422471 DOI: 10.1073/Pnas.1419276111 |
0.591 |
|
2014 |
Langlois R, Pallesen J, Ash JT, Nam Ho D, Rubinstein JL, Frank J. Automated particle picking for low-contrast macromolecules in cryo-electron microscopy. Journal of Structural Biology. 186: 1-7. PMID 24607413 DOI: 10.1016/J.Jsb.2014.03.001 |
0.339 |
|
2014 |
Boël G, Smith PC, Ning W, Englander MT, Chen B, Hashem Y, Testa AJ, Fischer JJ, Wieden HJ, Frank J, Gonzalez RL, Hunt JF. The ABC-F protein EttA gates ribosome entry into the translation elongation cycle. Nature Structural & Molecular Biology. 21: 143-51. PMID 24389466 DOI: 10.1038/Nsmb.2740 |
0.31 |
|
2014 |
Chen B, Boël G, Hashem Y, Ning W, Fei J, Wang C, Gonzalez RL, Hunt JF, Frank J. EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics. Nature Structural & Molecular Biology. 21: 152-9. PMID 24389465 DOI: 10.1038/Nsmb.2741 |
0.353 |
|
2014 |
des Georges A, Hashem Y, Unbehaun A, Grassucci RA, Taylor D, Hellen CU, Pestova TV, Frank J. Structure of the mammalian ribosomal pre-termination complex associated with eRF1.eRF3.GDPNP. Nucleic Acids Research. 42: 3409-18. PMID 24335085 DOI: 10.1093/Nar/Gkt1279 |
0.796 |
|
2014 |
Jobe A, Ruehle MD, Kieft JS, Frank J. A CRYO-EM Structure of a Minimal Translation Initiation System: Deletion in Self-Sufficient IRES Prevents Translocation Biophysical Journal. 106: 601a. DOI: 10.1016/J.Bpj.2013.11.3326 |
0.384 |
|
2014 |
Chen B, Sun M, Shen B, Lu Z, Barnard D, Lu T, Gonzalez R, Frank J. A Time-Resolved CRYO-EM Study of Ribosome Subunit Association by Mixing-Spraying Biophysical Journal. 106: 5-8. DOI: 10.1016/J.Bpj.2013.11.3310 |
0.342 |
|
2014 |
Ho DN, Shaqra A, Li W, deLivron MA, Dionne G, Gao N, Robinson VL, Frank J. The Cryo-EM Structure of the Ribosome Bound to BipA Biophysical Journal. 106: 492a. DOI: 10.1016/J.Bpj.2013.11.2752 |
0.386 |
|
2013 |
Hashem Y, des Georges A, Dhote V, Langlois R, Liao HY, Grassucci RA, Pestova TV, Hellen CU, Frank J. Hepatitis-C-virus-like internal ribosome entry sites displace eIF3 to gain access to the 40S subunit. Nature. 503: 539-43. PMID 24185006 DOI: 10.1038/Nature12658 |
0.733 |
|
2013 |
Lee SH, Ripke S, Neale BM, Faraone SV, Purcell SM, Perlis RH, Mowry BJ, Thapar A, Goddard ME, Witte JS, Absher D, Agartz I, Akil H, Amin F, ... ... Frank J, et al. Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nature Genetics. 45: 984-94. PMID 23933821 DOI: 10.1038/Ng.2711 |
0.353 |
|
2013 |
Pallesen J, Hashem Y, Korkmaz G, Koripella RK, Huang C, Ehrenberg M, Sanyal S, Frank J. Cryo-EM visualization of the ribosome in termination complex with apo-RF3 and RF1. Elife. 2: e00411. PMID 23755360 DOI: 10.7554/Elife.00411 |
0.381 |
|
2013 |
Hashem Y, des Georges A, Dhote V, Langlois R, Liao HY, Grassucci RA, Hellen CU, Pestova TV, Frank J. Structure of the mammalian ribosomal 43S preinitiation complex bound to the scanning factor DHX29. Cell. 153: 1108-19. PMID 23706745 DOI: 10.1016/J.Cell.2013.04.036 |
0.776 |
|
2013 |
Frank J. Story in a sample-the potential (and limitations) of cryo-electron microscopy applied to molecular machines. Biopolymers. 99: 832-6. PMID 23640776 DOI: 10.1002/Bip.22274 |
0.323 |
|
2013 |
Li W, Atkinson GC, Thakor NS, Allas U, Lu CC, Chan KY, Tenson T, Schulten K, Wilson KS, Hauryliuk V, Frank J. Mechanism of tetracycline resistance by ribosomal protection protein Tet(O). Nature Communications. 4: 1477. PMID 23403578 DOI: 10.1038/Ncomms2470 |
0.455 |
|
2013 |
Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J. High-resolution cryo-electron microscopy structure of the Trypanosoma brucei ribosome. Nature. 494: 385-9. PMID 23395961 DOI: 10.1038/Nature11872 |
0.773 |
|
2013 |
Sharma G, Pallesen J, Das S, Grassucci R, Langlois R, Hampton CM, Kelly DF, des Georges A, Frank J. Affinity grid-based cryo-EM of PKC binding to RACK1 on the ribosome. Journal of Structural Biology. 181: 190-4. PMID 23228487 DOI: 10.1016/J.Jsb.2012.11.006 |
0.741 |
|
2013 |
Jobe A, Hashem Y, Georges Ad, Fu J, Buss SN, Jossinet F, Zhang Q, Liao HY, Grassucci B, Bajaj C, Madison-Antenucci S, Westhof E, Frank J. 33 High-resolution cryo-EM structure of theTrypanosoma brucei80S: a unique eukaryotic ribosome Journal of Biomolecular Structure and Dynamics. 31: 20-20. DOI: 10.1080/07391102.2013.786465 |
0.367 |
|
2012 |
Taylor D, Unbehaun A, Li W, Das S, Lei J, Liao HY, Grassucci RA, Pestova TV, Frank J. Cryo-EM structure of the mammalian eukaryotic release factor eRF1-eRF3-associated termination complex. Proceedings of the National Academy of Sciences of the United States of America. 109: 18413-8. PMID 23091004 DOI: 10.1073/Pnas.1216730109 |
0.567 |
|
2012 |
Frank J. Intermediate states during mRNA-tRNA translocation. Current Opinion in Structural Biology. 22: 778-85. PMID 22906732 DOI: 10.1016/J.Sbi.2012.08.001 |
0.346 |
|
2012 |
Bussiere C, Hashem Y, Arora S, Frank J, Johnson AW. Integrity of the P-site is probed during maturation of the 60S ribosomal subunit Journal of Cell Biology. 197: 747-759. PMID 22689654 DOI: 10.1083/Jcb.201112131 |
0.315 |
|
2012 |
Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J. Structural characterization of mRNA-tRNA translocation intermediates. Proceedings of the National Academy of Sciences of the United States of America. 109: 6094-9. PMID 22467828 DOI: 10.1073/Pnas.1201288109 |
0.524 |
|
2012 |
Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, et al. Outcome of the first electron microscopy validation task force meeting. Structure (London, England : 1993). 20: 205-14. PMID 22325770 DOI: 10.1016/J.Str.2011.12.014 |
0.633 |
|
2012 |
Leith A, Baxter W, Frank J. Use of SPIDER and SPIRE in image reconstruction International Tables For Crystallography. DOI: 10.1107/97809553602060000874 |
0.324 |
|
2012 |
Ho DN, deLivron MA, Gao N, Robinson VL, Frank J. Toward a Cryo-Em Structure of the Ribosome Bound to BipA Biophysical Journal. 102: 69. DOI: 10.1016/J.Bpj.2011.11.406 |
0.38 |
|
2012 |
Sharma G, Stupina V, Pallesen J, Shapiro B, Simon A, Dinman J, Frank J. Cryo-Electron Microscopy (Cryo-EM) Structure of a Cap-Independent Translational Enhancer of the Turnip Crinkle Virus (TCV) Bound to the Eukaryotic Ribosome Biophysical Journal. 102: 393a. DOI: 10.1016/J.Bpj.2011.11.2147 |
0.647 |
|
2011 |
Fu J, Hashem Y, Wower J, Frank J. tmRNA on its way through the ribosome: two steps of resume, and what next? Rna Biology. 8: 586-90. PMID 21593606 DOI: 10.4161/Rna.8.4.15585 |
0.384 |
|
2011 |
Fu J, Munro JB, Blanchard SC, Frank J. Cryoelectron microscopy structures of the ribosome complex in intermediate states during tRNA translocation. Proceedings of the National Academy of Sciences of the United States of America. 108: 4817-21. PMID 21383139 DOI: 10.1073/Pnas.1101503108 |
0.375 |
|
2011 |
Agirrezabala X, Schreiner E, Trabuco LG, Lei J, Ortiz-Meoz RF, Schulten K, Green R, Frank J. Structural insights into cognate versus near-cognate discrimination during decoding. The Embo Journal. 30: 1497-507. PMID 21378755 DOI: 10.1038/Emboj.2011.58 |
0.569 |
|
2011 |
Li W, Trabuco LG, Schulten K, Frank J. Molecular dynamics of EF-G during translocation. Proteins. 79: 1478-86. PMID 21365677 DOI: 10.1002/Prot.22976 |
0.5 |
|
2011 |
Harrison OJ, Jin X, Hong S, Bahna F, Ahlsen G, Brasch J, Wu Y, Vendome J, Felsovalyi K, Hampton CM, Troyanovsky RB, Ben-Shaul A, Frank J, Troyanovsky SM, Shapiro L, et al. The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins. Structure (London, England : 1993). 19: 244-56. PMID 21300292 DOI: 10.1016/J.Str.2010.11.016 |
0.301 |
|
2011 |
Huang T, Shaikh TR, Gupta K, Contreras-Martin LM, Grassucci RA, Van Duyne GD, Frank J, Belfort M. The group II intron ribonucleoprotein precursor is a large, loosely packed structure Nucleic Acids Research. 39: 2845-2854. PMID 21131279 DOI: 10.1093/Nar/Gkq1202 |
0.362 |
|
2011 |
Liao HY, Langlois R, Frank J. Classification of Projections in Single Particle Electron Microscopy using Common Line Similarity Measure Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.3538 |
0.319 |
|
2011 |
Hashem Y, Fu J, Frank J. The First Atomic Model of the Transfer-Messenger RNA in the Resume State Biophysical Journal. 100: 4-5. DOI: 10.1016/J.Bpj.2010.12.2402 |
0.393 |
|
2010 |
Frank J. The Ribosome Comes Alive. Israel Journal of Chemistry. 50: 95-98. PMID 21072331 DOI: 10.1002/Ijch.201000010 |
0.383 |
|
2010 |
Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C, Wower J, Frank J. Visualizing the transfer-messenger RNA as the ribosome resumes translation. The Embo Journal. 29: 3819-25. PMID 20940705 DOI: 10.1038/Emboj.2010.255 |
0.412 |
|
2010 |
Sengupta J, Bussiere C, Pallesen J, West M, Johnson AW, Frank J. Characterization of the nuclear export adaptor protein Nmd3 in association with the 60S ribosomal subunit. The Journal of Cell Biology. 189: 1079-86. PMID 20584915 DOI: 10.1083/Jcb.201001124 |
0.414 |
|
2010 |
Agirrezabala X, Frank J. From DNA to proteins via the ribosome: structural insights into the workings of the translation machinery. Human Genomics. 4: 226-37. PMID 20511136 DOI: 10.1186/1479-7364-4-4-226 |
0.339 |
|
2010 |
Frank J, Gonzalez RL. Structure and dynamics of a processive Brownian motor: the translating ribosome. Annual Review of Biochemistry. 79: 381-412. PMID 20235828 DOI: 10.1146/Annurev-Biochem-060408-173330 |
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Réblová K, Rázga F, Li W, Gao H, Frank J, Sponer J. Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM. Nucleic Acids Research. 38: 1325-40. PMID 19952067 DOI: 10.1093/Nar/Gkp1057 |
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2010 |
Liao HY, Frank J. On Bootstrap Techniques For Classifying Projections in Single Particle Electron Microscopy Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.066 |
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2009 |
Agirrezabala X, Frank J. Elongation in translation as a dynamic interaction among the ribosome, tRNA, and elongation factors EF-G and EF-Tu. Quarterly Reviews of Biophysics. 42: 159-200. PMID 20025795 DOI: 10.1017/S0033583509990060 |
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Frank J. Single-particle reconstruction of biological macromolecules in electron microscopy--30 years. Quarterly Reviews of Biophysics. 42: 139-58. PMID 20025794 DOI: 10.1017/S0033583509990059 |
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2009 |
Taylor DJ, Devkota B, Huang AD, Topf M, Narayanan E, Sali A, Harvey SC, Frank J. Comprehensive molecular structure of the eukaryotic ribosome. Structure (London, England : 1993). 17: 1591-604. PMID 20004163 DOI: 10.1016/J.Str.2009.09.015 |
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2009 |
Shi Y, Di Giammartino DC, Taylor D, Sarkeshik A, Rice WJ, Yates JR, Frank J, Manley JL. Molecular architecture of the human pre-mRNA 3' processing complex. Molecular Cell. 33: 365-76. PMID 19217410 DOI: 10.1016/J.Molcel.2008.12.028 |
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2009 |
Villa E, Sengupta J, Trabuco LG, LeBarron J, Baxter WT, Shaikh TR, Grassucci RA, Nissen P, Ehrenberg M, Schulten K, Frank J. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis. Proceedings of the National Academy of Sciences of the United States of America. 106: 1063-8. PMID 19122150 DOI: 10.1073/Pnas.0811370106 |
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Renken C, Hsieh CE, Marko M, Rath B, Leith A, Wagenknecht T, Frank J, Mannella CA. Structure of frozen-hydrated triad junctions: a case study in motif searching inside tomograms. Journal of Structural Biology. 165: 53-63. PMID 19028586 DOI: 10.1016/J.Jsb.2008.09.011 |
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Fu J, Lei J, Wower I, Wower J, Frank J. Visualizing tmRNA after its accommodation in the Ribosome Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.946 |
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Gao H, Frank J. Analysis Of Ribosomal Dynamics As Revealed By Cryo-EM And Flexible Fitting Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3037 |
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2008 |
Shaikh TR, Gao H, Baxter WT, Asturias FJ, Boisset N, Leith A, Frank J. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nature Protocols. 3: 1941-74. PMID 19180078 DOI: 10.1038/Nprot.2008.156 |
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2008 |
Li W, Agirrezabala X, Lei J, Bouakaz L, Brunelle JL, Ortiz-Meoz RF, Green R, Sanyal S, Ehrenberg M, Frank J. Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM. The Embo Journal. 27: 3322-31. PMID 19020518 DOI: 10.1038/Emboj.2008.243 |
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2008 |
Agirrezabala X, Lei J, Brunelle JL, Ortiz-Meoz RF, Green R, Frank J. Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome. Molecular Cell. 32: 190-7. PMID 18951087 DOI: 10.1016/J.Molcel.2008.10.001 |
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2008 |
Sengupta J, Nilsson J, Gursky R, Kjeldgaard M, Nissen P, Frank J. Visualization of the eEF2-80S ribosome transition-state complex by cryo-electron microscopy. Journal of Molecular Biology. 382: 179-87. PMID 18644383 DOI: 10.1016/J.Jmb.2008.07.004 |
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2008 |
LeBarron J, Grassucci RA, Shaikh TR, Baxter WT, Sengupta J, Frank J. Exploration of parameters in cryo-EM leading to an improved density map of the E. coli ribosome. Journal of Structural Biology. 164: 24-32. PMID 18606549 DOI: 10.1016/J.Jsb.2008.05.007 |
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2008 |
Trabuco LG, Villa E, Mitra K, Frank J, Schulten K. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure (London, England : 1993). 16: 673-83. PMID 18462672 DOI: 10.1016/J.Str.2008.03.005 |
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2008 |
Grassucci RA, Taylor D, Frank J. Visualization of macromolecular complexes using cryo-electron microscopy with FEI Tecnai transmission electron microscopes. Nature Protocols. 3: 330-9. PMID 18274535 DOI: 10.1038/Nprot.2007.474 |
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2008 |
Villa E, Trabuco L, Mitra K, Sengupta J, Frank J, Schulten K. Merging data from cryo-EM and X-ray crystallography to reveal biomolecular function Acta Crystallographica Section a Foundations of Crystallography. 64: C47-C47. DOI: 10.1107/S0108767308098498 |
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2008 |
Marko M, Hsieh C, Salmon N, Rodriguez M, Frank J, Mannella C. FIB milling of frozen-hydrated cells and tissue for TEM cryo-tomography Microscopy and Microanalysis. 14: 968-969. DOI: 10.1017/S1431927608088673 |
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Grassucci RA, Taylor DJ, Frank J. Preparation of macromolecular complexes for cryo-electron microscopy. Nature Protocols. 2: 3239-46. PMID 18079724 DOI: 10.1038/Nprot.2007.452 |
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2007 |
Frank J, Gao H, Sengupta J, Gao N, Taylor DJ. The process of mRNA-tRNA translocation. Proceedings of the National Academy of Sciences of the United States of America. 104: 19671-8. PMID 18003906 DOI: 10.1073/Pnas.0708517104 |
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2007 |
Gao N, Zavialov AV, Ehrenberg M, Frank J. Specific interaction between EF-G and RRF and its implication for GTP-dependent ribosome splitting into subunits. Journal of Molecular Biology. 374: 1345-58. PMID 17996252 DOI: 10.1016/J.Jmb.2007.10.021 |
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2007 |
Li W, Frank J. Transfer RNA in the hybrid P/E state: correlating molecular dynamics simulations with cryo-EM data. Proceedings of the National Academy of Sciences of the United States of America. 104: 16540-5. PMID 17925437 DOI: 10.1073/Pnas.0708094104 |
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2007 |
Gao H, Zhou Z, Rawat U, Huang C, Bouakaz L, Wang C, Cheng Z, Liu Y, Zavialov A, Gursky R, Sanyal S, Ehrenberg M, Frank J, Song H. RF3 induces ribosomal conformational changes responsible for dissociation of class I release factors. Cell. 129: 929-41. PMID 17540173 DOI: 10.1016/J.Cell.2007.03.050 |
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2007 |
Taylor DJ, Nilsson J, Merrill AR, Andersen GR, Nissen P, Frank J. Structures of modified eEF2 80S ribosome complexes reveal the role of GTP hydrolysis in translocation. The Embo Journal. 26: 2421-31. PMID 17446867 DOI: 10.1038/Sj.Emboj.7601677 |
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Nilsson J, Sengupta J, Gursky R, Nissen P, Frank J. Comparison of fungal 80 S ribosomes by cryo-EM reveals diversity in structure and conformation of rRNA expansion segments. Journal of Molecular Biology. 369: 429-38. PMID 17434183 DOI: 10.1016/J.Jmb.2007.03.035 |
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Marko M, Hsieh C, Schalek R, Frank J, Mannella C. Focused-ion-beam thinning of frozen-hydrated biological specimens for cryo-electron microscopy. Nature Methods. 4: 215-7. PMID 17277781 DOI: 10.1038/Nmeth1014 |
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Allen GS, Frank J. Structural insights on the translation initiation complex: ghosts of a universal initiation complex. Molecular Microbiology. 63: 941-50. PMID 17238926 DOI: 10.1111/J.1365-2958.2006.05574.X |
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Scheres SH, Gao H, Valle M, Herman GT, Eggermont PP, Frank J, Carazo JM. Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization. Nature Methods. 4: 27-9. PMID 17179934 DOI: 10.1038/Nmeth992 |
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Gillet R, Kaur S, Li W, Hallier M, Felden B, Frank J. Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1. The Journal of Biological Chemistry. 282: 6356-63. PMID 17179154 DOI: 10.1074/Jbc.M609658200 |
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LeBarron J, Mitra K, Frank J. Displaying 3D data on RNA secondary structures: coloRNA. Journal of Structural Biology. 157: 262-70. PMID 17070699 DOI: 10.1016/J.Jsb.2006.08.018 |
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Fu J, Gao H, Frank J. Unsupervised classification of single particles by cluster tracking in multi-dimensional space. Journal of Structural Biology. 157: 226-39. PMID 16931050 DOI: 10.1016/J.Jsb.2006.06.012 |
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2007 |
Yang C, Penczek PA, Leith A, Asturias FJ, Ng EG, Glaeser RM, Frank J. The parallelization of SPIDER on distributed-memory computers using MPI Journal of Structural Biology. 157: 240-249. PMID 16859923 DOI: 10.1016/J.Jsb.2006.05.011 |
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2007 |
Taylor DJ, Frank J, Kinzy TG. 3 Structure and Function of the Eukaryotic Ribosome and Elongation Factors Cold Spring Harbor Monograph Archive. 48: 59-85. DOI: 10.1101/087969767.48.59 |
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Marko M, Scheeff M, Salmon N, Hsieh C, Rodriguez M, Frank J, Mannella C. Use of Focused Ion Beam Milling for Preparation of Frozen-Hydrated Specimens for TEM Tomography Microscopy and Microanalysis. 13: 1460-1461. DOI: 10.1017/S1431927607076520 |
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Mitra K, Frank J, Driessen A. Co- and post-translational translocation through the protein-conducting channel: analogous mechanisms at work? Nature Structural & Molecular Biology. 13: 957-64. PMID 17082791 DOI: 10.1038/Nsmb1166 |
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Kaur S, Gillet R, Li W, Gursky R, Frank J. Cryo-EM visualization of transfer messenger RNA with two SmpBs in a stalled ribosome. Proceedings of the National Academy of Sciences of the United States of America. 103: 16484-9. PMID 17056712 DOI: 10.1073/Pnas.0607438103 |
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2006 |
Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, et al. Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules Structure. 14: 1211-1217. PMID 16955948 DOI: 10.1016/J.Str.2006.06.005 |
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Slagter-Jäger JG, Allen GS, Smith D, Hahn IA, Frank J, Belfort M. Visualization of a group II intron in the 23S rRNA of a stable ribosome. Proceedings of the National Academy of Sciences of the United States of America. 103: 9838-43. PMID 16785426 DOI: 10.1073/Pnas.0603956103 |
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Marko M, Hsieh C, Moberlychan W, Mannella CA, Frank J. Focused ion beam milling of vitreous water: prospects for an alternative to cryo-ultramicrotomy of frozen-hydrated biological samples. Journal of Microscopy. 222: 42-7. PMID 16734713 DOI: 10.1111/J.1365-2818.2006.01567.X |
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Mitra K, Frank J. A model for co-translational translocation: ribosome-regulated nascent polypeptide translocation at the protein-conducting channel. Febs Letters. 580: 3353-60. PMID 16714018 DOI: 10.1016/J.Febslet.2006.05.019 |
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Mitra K, Schaffitzel C, Fabiola F, Chapman MS, Ban N, Frank J. Elongation arrest by SecM via a cascade of ribosomal RNA rearrangements. Molecular Cell. 22: 533-43. PMID 16713583 DOI: 10.1016/J.Molcel.2006.05.003 |
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Mitra K, Frank J. Ribosome dynamics: insights from atomic structure modeling into cryo-electron microscopy maps. Annual Review of Biophysics and Biomolecular Structure. 35: 299-317. PMID 16689638 DOI: 10.1146/Annurev.Biophys.35.040405.101950 |
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Li W, Sengupta J, Rath BK, Frank J. Functional conformations of the L11-ribosomal RNA complex revealed by correlative analysis of cryo-EM and molecular dynamics simulations. Rna (New York, N.Y.). 12: 1240-53. PMID 16682558 DOI: 10.1261/Rna.2294806 |
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Gao N, Frank J. A library of RNA bridges. Nature Chemical Biology. 2: 231-2. PMID 16619019 DOI: 10.1038/Nchembio0506-231 |
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Penczek PA, Frank J, Spahn CM. A method of focused classification, based on the bootstrap 3D variance analysis, and its application to EF-G-dependent translocation. Journal of Structural Biology. 154: 184-94. PMID 16520062 DOI: 10.1016/J.Jsb.2005.12.013 |
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Penczek PA, Yang C, Frank J, Spahn CM. Estimation of variance in single-particle reconstruction using the bootstrap technique. Journal of Structural Biology. 154: 168-83. PMID 16510296 DOI: 10.1016/J.Jsb.2006.01.003 |
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Rawat U, Gao H, Zavialov A, Gursky R, Ehrenberg M, Frank J. Interactions of the release factor RF1 with the ribosome as revealed by cryo-EM. Journal of Molecular Biology. 357: 1144-53. PMID 16476444 DOI: 10.1016/J.Jmb.2006.01.038 |
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Hsieh CE, Leith A, Mannella CA, Frank J, Marko M. Towards high-resolution three-dimensional imaging of native mammalian tissue: electron tomography of frozen-hydrated rat liver sections. Journal of Structural Biology. 153: 1-13. PMID 16343943 DOI: 10.1016/J.Jsb.2005.10.004 |
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2006 |
Frank J, Spahn CMT. The ribosome and the mechanism of protein synthesis Reports On Progress in Physics. 69: 1383-1417. DOI: 10.1088/0034-4885/69/5/R03 |
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Mitra K, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks CL, Ban N, Frank J. Erratum: Structure of the E. coli protein-conducting channel bound to a translating ribosome Nature. 443: 718-718. DOI: 10.1038/Nature05086 |
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Penczek PA, Frank J. Determination of Resolution in Electron Tomography Microscopy and Microanalysis. 12: 1542-1543. DOI: 10.1017/S143192760606853X |
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Penczek PA, Frank J, Spahn CMT. Conformational Heterogeneity of Macromolecules Analyzed by Cryo-Electron Microscopy Microscopy and Microanalysis. 12: 386-387. DOI: 10.1017/S1431927606068528 |
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Marko M, Hsieh CE, Shalek R, Ting CS, Mannella CA, Frank J. Focused ion beam (FIB) preparation methods for 3-D biological cryo-TEM Microscopy and Microanalysis. 12: 98-99. DOI: 10.1017/S1431927606066621 |
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Datta PP, Sharma MR, Qi L, Frank J, Agrawal RK. Interaction of the G' domain of elongation factor G and the C-terminal domain of ribosomal protein L7/L12 during translocation as revealed by cryo-EM. Molecular Cell. 20: 723-31. PMID 16337596 DOI: 10.1016/J.Molcel.2005.10.028 |
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Adiga U, Baxter WT, Hall RJ, Rockel B, Rath BK, Frank J, Glaeser R. Particle picking by segmentation: a comparative study with SPIDER-based manual particle picking. Journal of Structural Biology. 152: 211-20. PMID 16330229 DOI: 10.1016/J.Jsb.2005.09.007 |
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Mitra K, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks CL, Ban N, Frank J. Structure of the E. coli protein-conducting channel bound to a translating ribosome. Nature. 438: 318-24. PMID 16292303 DOI: 10.1038/Nature04133 |
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Gao H, Ayub MJ, Levin MJ, Frank J. The structure of the 80S ribosome from Trypanosoma cruzi reveals unique rRNA components. Proceedings of the National Academy of Sciences of the United States of America. 102: 10206-11. PMID 16014419 DOI: 10.1073/Pnas.0500926102 |
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Gao N, Zavialov AV, Li W, Sengupta J, Valle M, Gursky RP, Ehrenberg M, Frank J. Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies. Molecular Cell. 18: 663-74. PMID 15949441 DOI: 10.1016/J.Molcel.2005.05.005 |
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Allen GS, Zavialov A, Gursky R, Ehrenberg M, Frank J. The cryo-EM structure of a translation initiation complex from Escherichia coli. Cell. 121: 703-12. PMID 15935757 DOI: 10.1016/J.Cell.2005.03.023 |
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Halic M, Becker T, Frank J, Spahn CM, Beckmann R. Localization and dynamic behavior of ribosomal protein L30e. Nature Structural & Molecular Biology. 12: 467-8. PMID 15864315 DOI: 10.1038/Nsmb933 |
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Gao H, Frank J. Molding atomic structures into intermediate-resolution cryo-EM density maps of ribosomal complexes using real-space refinement. Structure (London, England : 1993). 13: 401-6. PMID 15766541 DOI: 10.1016/J.Str.2005.01.004 |
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Frank J, Sengupta J, Gao H, Li W, Valle M, Zavialov A, Ehrenberg M. The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer. Febs Letters. 579: 959-62. PMID 15680982 DOI: 10.1016/J.Febslet.2004.10.105 |
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Frank J, Gao H, Li W, Sengupta J. Cryo-electron Microscopy of the Ribosome: Methods of Fitting, and Inference of Dynamics Acta Crystallographica Section A. 61: 67-67. DOI: 10.1107/S010876730509714X |
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Marko M, Hsieh C, Dunn K, Typke D, Mannella C, Frank J. Use of the Zernike Phase Plate for Electron Tomography of Frozen-Hydrated Specimens Microscopy and Microanalysis. 11: 310-311. DOI: 10.1017/S1431927605501557 |
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Marko M, Hsieh C, MoberlyChan WJ, Mannella CA, Frank J. Feasibility of Focused Ion Beam Milling for Preparation of TEM Specimens of Biological Material Embedded in Vitreous Ice Microscopy and Microanalysis. 11: 802-803. DOI: 10.1017/S1431927605500709 |
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Nilsson J, Sengupta J, Frank J, Nissen P. Regulation of eukaryotic translation by the RACK1 protein: a platform for signalling molecules on the ribosome. Embo Reports. 5: 1137-41. PMID 15577927 DOI: 10.1038/Sj.Embor.7400291 |
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Gao H, Valle M, Ehrenberg M, Frank J. Dynamics of EF-G interaction with the ribosome explored by classification of a heterogeneous cryo-EM dataset. Journal of Structural Biology. 147: 283-90. PMID 15450297 DOI: 10.1016/J.Jsb.2004.02.008 |
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2004 |
Bzowska A, Koellner G, Wielgus-Kutrowska B, Stroh A, Raszewski G, Holý A, Steiner T, Frank J. Crystal structure of calf spleen purine nucleoside phosphorylase with two full trimers in the asymmetric unit: important implications for the mechanism of catalysis. Journal of Molecular Biology. 342: 1015-32. PMID 15342253 DOI: 10.1016/J.Jmb.2004.07.017 |
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Sengupta J, Nilsson J, Gursky R, Spahn CM, Nissen P, Frank J. Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM. Nature Structural & Molecular Biology. 11: 957-62. PMID 15334071 DOI: 10.1038/Nsmb822 |
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Spahn CM, Jan E, Mulder A, Grassucci RA, Sarnow P, Frank J. Cryo-EM visualization of a viral internal ribosome entry site bound to human ribosomes: the IRES functions as an RNA-based translation factor. Cell. 118: 465-75. PMID 15315759 DOI: 10.1016/J.Cell.2004.08.001 |
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Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J. Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications. Proceedings of the National Academy of Sciences of the United States of America. 101: 8900-5. PMID 15178758 DOI: 10.1073/Pnas.0401904101 |
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Rath BK, Frank J. Fast automatic particle picking from cryo-electron micrographs using a locally normalized cross-correlation function: a case study Journal of Structural Biology. 145: 84-90. PMID 15065676 DOI: 10.1016/J.Jsb.2003.11.015 |
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Halic M, Becker T, Pool MR, Spahn CM, Grassucci RA, Frank J, Beckmann R. Structure of the signal recognition particle interacting with the elongation-arrested ribosome. Nature. 427: 808-14. PMID 14985753 DOI: 10.1038/Nature02342 |
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Spahn CM, Gomez-Lorenzo MG, Grassucci RA, Jørgensen R, Andersen GR, Beckmann R, Penczek PA, Ballesta JP, Frank J. Domain movements of elongation factor eEF2 and the eukaryotic 80S ribosome facilitate tRNA translocation. The Embo Journal. 23: 1008-19. PMID 14976550 DOI: 10.1038/Sj.Emboj.7600102 |
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Gao H, Valle M, Ehrenberg M, Frank J. Corrigendum to “Dynamics of EF-G interaction with the ribosome explored by classification of a heterogeneous cryo-EM dataset” [J. Struct. Biol. 147 (2004) 283–290] Journal of Structural Biology. 148: 375. DOI: 10.1016/J.Jsb.2004.09.002 |
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Frank J. Toward an understanding of the structural basis of translation. Genome Biology. 4: 237-237. PMID 14659007 DOI: 10.1186/Gb-2003-4-12-237 |
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Rath BK, Hegerl R, Leith A, Shaikh TR, Wagenknecht T, Frank J. Fast 3D motif search of EM density maps using a locally normalized cross-correlation function. Journal of Structural Biology. 144: 95-103. PMID 14643212 DOI: 10.1016/J.Jsb.2003.09.029 |
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Gomez-Lorenzo MG, Valle M, Frank J, Gruss C, Sorzano CO, Chen XS, Donate LE, Carazo JM. Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication. The Embo Journal. 22: 6205-13. PMID 14633980 DOI: 10.1093/Emboj/Cdg612 |
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Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nature Structural Biology. 10: 899-906. PMID 14566331 DOI: 10.1038/Nsb1003 |
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Moccia R, Chen D, Lyles V, Kapuya E, E Y, Kalachikov S, Spahn CM, Frank J, Kandel ER, Barad M, Martin KC. An unbiased cDNA library prepared from isolated Aplysia sensory neuron processes is enriched for cytoskeletal and translational mRNAs. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 9409-17. PMID 14561869 DOI: 10.1523/Jneurosci.23-28-09409.2003 |
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Tama F, Valle M, Frank J, Brooks CL. Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 100: 9319-23. PMID 12878726 DOI: 10.1073/Pnas.1632476100 |
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Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J. Locking and unlocking of ribosomal motions. Cell. 114: 123-34. PMID 12859903 DOI: 10.1016/S0092-8674(03)00476-8 |
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Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J. Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell. 113: 789-801. PMID 12809609 DOI: 10.1016/S0092-8674(03)00427-6 |
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Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J. Visualizing tmRNA entry into a stalled ribosome Science. 300: 127-130. PMID 12677067 DOI: 10.1126/Science.1081798 |
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Yarus M, Valle M, Frank J. A twisted tRNA intermediate sets the threshold for decoding. Rna (New York, N.Y.). 9: 384-5. PMID 12649490 DOI: 10.1261/Rna.2184703 |
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Frank J. Electron microscopy of functional ribosome complexes Biopolymers. 68: 223-233. PMID 12548625 DOI: 10.1002/Bip.10210 |
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Rawat UB, Zavialov AV, Sengupta J, Valle M, Grassucci RA, Linde J, Vestergaard B, Ehrenberg M, Frank J. A cryo-electron microscopic study of ribosome-bound termination factor RF2. Nature. 421: 87-90. PMID 12511960 DOI: 10.1038/Nature01224 |
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Hsieh C-, Marko M, Leith A, Frank J, Mannella CA. Electron Tomographic Comparison of Frozen-Hydrated and Freeze-Substituted Sections of High-Pressure Frozen Rat-Liver Tissue Microscopy and Microanalysis. 9: 1178-1179. DOI: 10.1017/S1431927603445893 |
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Gao H, Spahn CM, Grassucci RA, Frank J. An assay for local quality in cryo-electron micrographs of single particles. Ultramicroscopy. 93: 169-78. PMID 12425594 DOI: 10.1016/S0304-3991(02)00157-2 |
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2002 |
Stagg SM, Valle M, Agrawal RK, Frank J, Harvey SC. Problems with the transorientation hypothesis. Rna (New York, N.Y.). 8: 1093-4. PMID 12358427 DOI: 10.1017/S1355838202027061 |
0.777 |
|
2002 |
Frank J, Wagenknecht T, McEwen BF, Marko M, Hsieh CE, Mannella CA. Three-dimensional imaging of biological complexity. Journal of Structural Biology. 138: 85-91. PMID 12160704 DOI: 10.1016/S1047-8477(02)00019-9 |
0.61 |
|
2002 |
Hsieh CE, Marko M, Frank J, Mannella CA. Electron tomographic analysis of frozen-hydrated tissue sections. Journal of Structural Biology. 138: 63-73. PMID 12160702 DOI: 10.1016/S1047-8477(02)00034-5 |
0.582 |
|
2002 |
Valle M, Sengupta J, Swami NK, Grassucci RA, Burkhardt N, Nierhaus KH, Agrawal RK, Frank J. Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. The Embo Journal. 21: 3557-67. PMID 12093756 DOI: 10.1093/Emboj/Cdf326 |
0.791 |
|
2002 |
Frank J. Single-particle imaging of macromolecules by cryo-electron microscopy Annual Review of Biophysics and Biomolecular Structure. 31: 303-319. PMID 11988472 DOI: 10.1146/Annurev.Biophys.31.082901.134202 |
0.387 |
|
2002 |
Hsieh CE, Marko M, Frank J, Mannella CA. Electron Tomography of Frozen-Hydrated Sections Microscopy and Microanalysis. 8: 878-879. DOI: 10.1017/S1431927602106726 |
0.555 |
|
2002 |
Frank J, Sengupta J, Valle M, Agrawal R. The Ribosome – Ligand Interactions and Dynamics as Inferred by Cryo-EM Microscopy and Microanalysis. 8: 206-207. DOI: 10.1017/S1431927602100031 |
0.74 |
|
2001 |
Beckmann R, Spahn CM, Frank J, Blobel G. The active 80S ribosome-Sec61 complex. Cold Spring Harbor Symposia On Quantitative Biology. 66: 543-54. PMID 12762056 DOI: 10.1101/Sqb.2001.66.543 |
0.622 |
|
2001 |
Frank J. Ribosomal dynamics explored by cryo-electron microscopy Methods. 25: 309-315. PMID 11860285 DOI: 10.1006/Meth.2001.1243 |
0.371 |
|
2001 |
Spahn CM, Beckmann R, Eswar N, Penczek PA, Sali A, Blobel G, Frank J. Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions. Cell. 107: 373-86. PMID 11701127 DOI: 10.1016/S0092-8674(01)00539-6 |
0.685 |
|
2001 |
Beckmann R, Spahn CM, Eswar N, Helmers J, Penczek PA, Sali A, Frank J, Blobel G. Architecture of the protein-conducting channel associated with the translating 80S ribosome. Cell. 107: 361-72. PMID 11701126 DOI: 10.1016/S0092-8674(01)00541-4 |
0.674 |
|
2001 |
McEwen BF, Frank J. Electron tomographic and other approaches for imaging molecular machines. Current Opinion in Neurobiology. 11: 594-600. PMID 11595494 DOI: 10.1016/S0959-4388(00)00255-5 |
0.319 |
|
2001 |
Sengupta J, Agrawal RK, Frank J. Visualization of protein S1 within the 30S ribosomal subunit and its interaction with messenger RNA. Proceedings of the National Academy of Sciences of the United States of America. 98: 11991-11996. PMID 11593008 DOI: 10.1073/Pnas.211266898 |
0.383 |
|
2001 |
Agrawal RK, Linde J, Sengupta J, Nierhaus KH, Frank J. Localization of L11 Protein on the Ribosome and Elucidation of its Involvement in EF-G-dependent Translocation Journal of Molecular Biology. 311: 777-787. PMID 11518530 DOI: 10.1006/Jmbi.2001.4907 |
0.341 |
|
2001 |
Gabashvili IS, Gregory ST, Valle M, Grassucci R, Worbs M, Wahl MC, Dahlberg AE, Frank J. The polypeptide tunnel system in the ribosome and its gating in erythromycin resistance mutants of L4 and L22. Molecular Cell. 8: 181-8. PMID 11511371 DOI: 10.1016/S1097-2765(01)00293-3 |
0.785 |
|
2001 |
Frank J. Cryo-electron microscopy as an investigative tool: The ribosome as an example Bioessays. 23: 725-732. PMID 11494321 DOI: 10.1002/Bies.1102 |
0.437 |
|
2001 |
Spahn CM, Blaha G, Agrawal RK, Penczek P, Grassucci RA, Trieber CA, Connell SR, Taylor DE, Nierhaus KH, Frank J. Localization of the ribosomal protection protein Tet(O) on the ribosome and the mechanism of tetracycline resistance. Molecular Cell. 7: 1037-45. PMID 11389850 DOI: 10.1016/S1097-2765(01)00238-6 |
0.647 |
|
2001 |
Spahn CM, Kieft JS, Grassucci RA, Penczek PA, Zhou K, Doudna JA, Frank J. Hepatitis C virus IRES RNA-induced changes in the conformation of the 40s ribosomal subunit. Science (New York, N.Y.). 291: 1959-62. PMID 11239155 DOI: 10.1126/Science.1058409 |
0.661 |
|
2001 |
McEwen BF, Barnard RM, Hsieh C, Frank J. Using Electron Tomography to Determine How Kinetochores Bind and Alter the Conformations of Microtubule Plus Ends Microscopy and Microanalysis. 7: 86-87. DOI: 10.1017/S1431927600026507 |
0.325 |
|
2000 |
VanLoock MS, Agrawal RK, Gabashvili IS, Qi L, Frank J, Harvey SC. Movement of the decoding region of the 16 S ribosomal RNA accompanies tRNA translocation. Journal of Molecular Biology. 304: 507-15. PMID 11099376 DOI: 10.1006/Jmbi.2000.4213 |
0.745 |
|
2000 |
Spahn CM, Penczek PA, Leith A, Frank J. A method for differentiating proteins from nucleic acids in intermediate-resolution density maps: cryo-electron microscopy defines the quaternary structure of the Escherichia coli 70S ribosome. Structure (London, England : 1993). 8: 937-48. PMID 10986461 DOI: 10.1016/S0969-2126(00)00185-4 |
0.66 |
|
2000 |
Wriggers W, Agrawal RK, Drew DL, McCammon A, Frank J. Domain motions of EF-G bound to the 70S ribosome: insights from a hand-shaking between multi-resolution structures. Biophysical Journal. 79: 1670-8. PMID 10969026 DOI: 10.1016/S0006-3495(00)76416-2 |
0.376 |
|
2000 |
Agrawal RK, Spahn CM, Penczek P, Grassucci RA, Nierhaus KH, Frank J. Visualization of tRNA movements on the Escherichia coli 70S ribosome during the elongation cycle. The Journal of Cell Biology. 150: 447-60. PMID 10931859 DOI: 10.1083/Jcb.150.3.447 |
0.643 |
|
2000 |
Frank J, Agrawal RK. A ratchet-like inter-subunit reorganization of the ribosome during translocation. Nature. 406: 318-322. PMID 10917535 DOI: 10.1038/35018597 |
0.392 |
|
2000 |
Frank J. The ribosome – a macromolecular machine par excellence Chemistry & Biology. 7. PMID 10873840 DOI: 10.1016/S1074-5521(00)00127-7 |
0.403 |
|
2000 |
Gomez-Lorenzo MG, Spahn CM, Agrawal RK, Grassucci RA, Penczek P, Chakraburtty K, Ballesta JP, Lavandera JL, Garcia-Bustos JF, Frank J. Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 A resolution. The Embo Journal. 19: 2710-8. PMID 10835368 DOI: 10.1093/Emboj/19.11.2710 |
0.69 |
|
2000 |
Blaha G, Stelzl U, Spahn CM, Agrawal RK, Frank J, Nierhaus KH. Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy. Methods in Enzymology. 317: 292-309. PMID 10829287 DOI: 10.1016/S0076-6879(00)17021-1 |
0.681 |
|
2000 |
Gabashvili IS, Agrawal RK, Spahn CM, Grassucci RA, Svergun DI, Frank J, Penczek P. Solution structure of the E. coli 70S ribosome at 11.5 A resolution. Cell. 100: 537-49. PMID 10721991 DOI: 10.1016/S0092-8674(00)80690-X |
0.808 |
|
2000 |
Penczek P, Spahn CMT, Agrawal RK, Gabashvili IS, Grassucci RA, Frank J. Advances in High Resolution Cryo-EM Studies: the Quartenary Structure of the 70S E.Coli Ribosome Revealed at 11.5Å Resolution. Microscopy and Microanalysis. 6: 262-263. DOI: 10.1017/S1431927600033808 |
0.722 |
|
1999 |
Spahn CM, Grassucci RA, Penczek P, Frank J. Direct three-dimensional localization and positive identification of RNA helices within the ribosome by means of genetic tagging and cryo-electron microscopy. Structure (London, England : 1993). 7: 1567-73. PMID 10647187 DOI: 10.1016/S0969-2126(00)88347-1 |
0.66 |
|
1999 |
Penczek P, Ban N, Grassucci RA, Agrawal RK, Frank J. Haloarcula marismortui 50S subunit-complementarity of electron microscopy and X-Ray crystallographic information. Journal of Structural Biology. 128: 44-50. PMID 10600557 DOI: 10.1006/Jsbi.1999.4157 |
0.302 |
|
1999 |
Frank J, Heagle AB, Agrawal RK. Animation of the dynamical events of the elongation cycle based on cryoelectron microscopy of functional complexes of the ribosome. Journal of Structural Biology. 128: 15-18. PMID 10600553 DOI: 10.1006/Jsbi.1999.4138 |
0.361 |
|
1999 |
Gabashvili IS, Agrawal RK, Grassucci R, Squires CL, Dahlberg AE, Frank J. Major rearrangements in the 70S ribosomal 3D structure caused by a conformational switch in 16S ribosomal RNA. The Embo Journal. 18: 6501-7. PMID 10562562 DOI: 10.1093/Emboj/18.22.6501 |
0.75 |
|
1999 |
Agrawal RK, Heagle AB, Penczek P, Grassucci RA, Frank J. EF-G-dependent GTP hydrolysis induces translocation accompanied by large conformational changes in the 70S ribosome. Nature Structural & Molecular Biology. 6: 643-647. PMID 10404220 DOI: 10.1038/10695 |
0.324 |
|
1999 |
Agrawal RK, Frank J. Structural studies of the translational apparatus Current Opinion in Structural Biology. 9: 215-221. PMID 10322215 DOI: 10.1016/S0959-440X(99)80031-1 |
0.36 |
|
1999 |
Agrawal RK, Lata RK, Frank J. Conformational variability in Escherichia coli 70S ribosome as revealed by 3D cryo-electron microscopy. The International Journal of Biochemistry & Cell Biology. 31: 243-254. PMID 10216957 DOI: 10.1016/S1357-2725(98)00149-6 |
0.406 |
|
1999 |
McCutcheon JP, Agrawal RK, Philips SM, Grassucci RA, Gerchman SE, Clemons WM, Ramakrishnan V, Frank J. Location of translational initiation factor IF3 on the small ribosomal subunit. Proceedings of the National Academy of Sciences of the United States of America. 96: 4301-6. PMID 10200257 DOI: 10.1073/Pnas.96.8.4301 |
0.419 |
|
1999 |
Agrawal RK, Penczek P, Grassucci RA, Burkhardt N, Nierhaus KH, Frank J. Effect of buffer conditions on the position of tRNA on the 70 S ribosome as visualized by cryoelectron microscopy. Journal of Biological Chemistry. 274: 8723-8729. PMID 10085112 DOI: 10.1074/Jbc.274.13.8723 |
0.324 |
|
1999 |
Gabashvili IS, Agrawal RK, Grassucci R, Frank J. Structure and structural variations of the Escherichia coli 30 S ribosomal subunit as revealed by three-dimensional cryo-electron microscopy. Journal of Molecular Biology. 286: 1285-91. PMID 10064696 DOI: 10.1006/Jmbi.1999.2538 |
0.762 |
|
1999 |
Manoj N, Srinivas VR, Surolia A, Vijayan M, Suguna K, Ravishankar R, Schwarzenbacher R, Zeth K, Diederichs, Kostner GM, Gries A, Laggner P, Prassl R, Madhusudan, Akamine P, ... ... Frank J, et al. Contributory presentations/posters Journal of Biosciences. 24: 33-198. DOI: 10.1007/Bf02989373 |
0.386 |
|
1998 |
Frank J. The ribosome - Structure and functional ligand-binding experiments using cryo-electron microscopy Journal of Structural Biology. 124: 142-150. PMID 10049802 DOI: 10.1006/Jsbi.1998.4071 |
0.426 |
|
1998 |
Ban N, Freeborn B, Nissen P, Penczek P, Grassucci RA, Sweet R, Frank J, Moore PB, Steitz TA. A 9 A resolution X-ray crystallographic map of the large ribosomal subunit. Cell. 93: 1105-15. PMID 9657144 DOI: 10.1016/S0092-8674(00)81455-5 |
0.352 |
|
1998 |
Malhotra A, Penczek P, Agrawal RK, Gabashvili IS, Grassucci RA, Jünemann R, Burkhardt N, Nierhaus KH, Frank J. Escherichia coli 70 S ribosome at 15 A resolution by cryo-electron microscopy: localization of fMet-tRNAfMet and fitting of L1 protein. Journal of Molecular Biology. 280: 103-16. PMID 9653034 DOI: 10.1006/Jmbi.1998.1859 |
0.797 |
|
1998 |
Agrawal RK, Penczek PA, Grassucci RA, Frank J. Visualization of elongation factor G on the Escherichia coli 70S ribosome: The mechanism of translocation Proceedings of the National Academy of Sciences of the United States of America. 95: 6134-6138. PMID 9600930 DOI: 10.1073/Pnas.95.11.6134 |
0.396 |
|
1998 |
Samsó M, Radermacher M, Frank J, Koonce MP. Structural characterization of a dynein motor domain. Journal of Molecular Biology. 276: 927-37. PMID 9566197 DOI: 10.1006/Jmbi.1997.1584 |
0.366 |
|
1998 |
Frank J, Agrawal RK. The movement of tRNA through the ribosome. Biophysical Journal. 74: 589-594. PMID 9449359 DOI: 10.1016/S0006-3495(98)77817-8 |
0.343 |
|
1998 |
Verschoor A, Warner JR, Srivastava S, Grassucci RA, Frank J. Three-dimensional structure of the yeast ribosome Nucleic Acids Research. 26: 655-661. PMID 9421530 DOI: 10.1093/Nar/26.2.655 |
0.392 |
|
1998 |
Frank J, Penczek P, Malhotra A, Gabashvili I, Grassucci R, Heagle A, Srivastava S, Burkhardt N, Jünemann R, Nierhaus KH, Agrawal RK. The Ribosome - Three-Dimensional Structure and Ligand-Binding Studies Microscopy and Microanalysis. 4: 962-963. DOI: 10.1017/S1431927600024934 |
0.715 |
|
1997 |
Beckmann R, Bubeck D, Grassucci R, Penczek P, Verschoor A, Blobel G, Frank J. Alignment of conduits for the nascent polypeptide chain in the ribosome-Sec61 complex. Science (New York, N.Y.). 278: 2123-6. PMID 9405348 DOI: 10.1126/Science.278.5346.2123 |
0.406 |
|
1997 |
Zhu J, Penczek PA, Schröder R, Frank J. Three-Dimensional Reconstruction with Contrast Transfer Function Correction from Energy-Filtered Cryoelectron Micrographs: Procedure and Application to the 70S Escherichia coli Ribosome Journal of Structural Biology. 118: 197-219. PMID 9169230 DOI: 10.1006/Jsbi.1997.3845 |
0.307 |
|
1997 |
Frank J. The ribosome at higher resolution--the donut takes shape. Current Opinion in Structural Biology. 7: 266-272. PMID 9094327 DOI: 10.1016/S0959-440X(97)80035-8 |
0.372 |
|
1997 |
Wadzack J, Burkhardt N, Jünemann R, Diedrich G, Nierhaus KH, Frank J, Penczek P, Meerwinck W, Schmitt M, Willumeit R, Stuhrmann HB. Direct localization of the tRNAs within the elongating ribosome by means of neutron scattering (proton-spin contrast-variation). Journal of Molecular Biology. 266: 343-56. PMID 9047368 DOI: 10.1006/Jmbi.1996.0788 |
0.316 |
|
1996 |
Lata KR, Agrawal RK, Penczek P, Grassucci R, Zhu J, Frank J. Three-dimensional reconstruction of the Escherichia coli 30 S ribosomal subunit in ice. Journal of Molecular Biology. 262: 43-52. PMID 8809178 DOI: 10.1006/Jmbi.1996.0497 |
0.326 |
|
1996 |
Marabini R, Vaquerizo C, Fernández JJ, Carazo JM, Engel A, Frank J. Proposal for a new distributed database of macromolecular and subcellular structures from different areas of microscopy. Journal of Structural Biology. 116: 161-5. PMID 8742739 DOI: 10.1006/Jsbi.1996.0026 |
0.753 |
|
1996 |
Verschoor A, Srivastava S, Grassucci R, Frank J. Native 3D structure of eukaryotic 80s ribosome: morphological homology with E. coli 70S ribosome. Journal of Cell Biology. 133: 495-505. PMID 8636226 DOI: 10.1083/Jcb.133.3.495 |
0.359 |
|
1996 |
Agrawal RK, Penczek PA, Grassucci RA, Li Y, Leith A, Nierhaus KH, Frank J. Direct Visualization of A-, P-, and E-Site Transfer RNAs in the Escherichia coli Ribosome Science. 271: 1000-1002. PMID 8584922 DOI: 10.1126/Science.271.5251.1000 |
0.346 |
|
1996 |
Liu W, Boisset N, Frank J. Estimation of variance distribution in three-dimensional reconstruction. II. Applications. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 12: 2628-35. PMID 7500222 DOI: 10.1364/Josaa.12.002628 |
0.663 |
|
1995 |
Frank J, Verschoor A, Li Y, Zhu J, Lata RK, Radermacher M, Penczek PA, Grassucci R, Agrawal RK, Srivastava S. A Model Of The Translational Apparatus Based On A Three-Dimensional Reconstruction Of The Escherichia Coli Ribosome Biochemistry and Cell Biology. 73: 757-765. PMID 8721992 DOI: 10.1139/O95-084 |
0.337 |
|
1995 |
Srivastava S, Verschoor A, Radermacher M, Grassucci R, Frank J. Three-dimensional reconstruction of mammalian 40 S ribosomal subunit embedded in ice. Journal of Molecular Biology. 245: 461-466. PMID 7844819 DOI: 10.1006/Jmbi.1994.0037 |
0.373 |
|
1995 |
Frank J. Approaches to large-scale structures Current Opinion in Structural Biology. 5: 194-201. PMID 7648321 DOI: 10.1016/0959-440X(95)80075-1 |
0.328 |
|
1995 |
Frank J, Zhu J, Penczek PA, Li Y, Srivastava S, Verschoor A, Radermacher M, Grassucci R, Lata RK, Agrawal RK. A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome Nature. 376: 441-444. PMID 7630422 DOI: 10.1038/376441A0 |
0.41 |
|
1995 |
Boisset N, Penczek PA, Taveau JC, Lamy J, Frank J, Lamy J. Three-dimensional reconstruction of Androctonus australis hemocyanin labeled with a monoclonal Fab fragment. Journal of Structural Biology. 115: 16-29. PMID 7577229 DOI: 10.1006/Jsbi.1995.1025 |
0.665 |
|
1995 |
Lata KR, Penczek PA, Frank J. Automatic particle picking from electron micrographs. Ultramicroscopy. 58: 381-391. PMID 7571118 DOI: 10.1016/0304-3991(95)00002-I |
0.301 |
|
1994 |
Mannella CA, Marko M, Penczek P, Barnard D, Frank J. The internal compartmentation of rat-liver mitochondria: Tomographic study using the high-voltage transmission electron microscope Microscopy Research and Technique. 27: 278-283. PMID 8186446 DOI: 10.1002/Jemt.1070270403 |
0.594 |
|
1994 |
Penczek PA, Grassucci RA, Frank J. The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles. Ultramicroscopy. 53: 251-270. PMID 8160308 DOI: 10.1016/0304-3991(94)90038-8 |
0.356 |
|
1994 |
Lambert O, Boisset N, Penczek PA, Lamy J, Taveau JC, Frank J, Lamy JN. Quaternary structure of Octopus vulgaris hemocyanin. Three-dimensional reconstruction from frozen-hydrated specimens and intramolecular location of functional units Ove and Ovb. Journal of Molecular Biology. 238: 75-87. PMID 8145258 DOI: 10.1006/Jmbi.1994.1269 |
0.67 |
|
1994 |
Radermacher M, Rao V, Grassucci R, Frank J, Timerman AP, Fleischer S, Wagenknecht T. Cryo-electron microscopy and three-dimensional reconstruction of the calcium release channel/ryanodine receptor from skeletal muscle Journal of Cell Biology. 127: 411-423. PMID 7929585 DOI: 10.1083/Jcb.127.2.411 |
0.345 |
|
1994 |
Boisset N, Penczek P, Pochon F, Frank J, Lamy J. Three‐Dimensional Reconstruction of Human α2‐Macroglobulin and Refinement of the Localization of Thiol Ester Bonds with Monomaleimido Nanogolda Annals of the New York Academy of Sciences. 737: 229-244. PMID 7524399 DOI: 10.1111/J.1749-6632.1994.Tb44315.X |
0.614 |
|
1993 |
Frank J, Chiu W, Henderson R. Flopping polypeptide chains and Suleika's subtle imperfections: analysis of variations in the electron micrograph of a purple membrane crystal. Ultramicroscopy. 49: 387-96. PMID 8475603 DOI: 10.1016/0304-3991(93)90244-R |
0.465 |
|
1993 |
McEwen BF, Arena JT, Frank J, Rieder CL. Structure of the colcemid-treated PtK1 kinetochore outer plate as determined by high voltage electron microscopic tomography. The Journal of Cell Biology. 120: 301-12. PMID 8421050 DOI: 10.1083/Jcb.120.2.301 |
0.304 |
|
1993 |
Boisset N, Radermacher M, Grassucci R, Taveau J, Liu W, Lamy J, Frank J, Lamy JN. Three-dimensional immunoelectron microscopy of scorpion hemocyanin labeled with a monoclonal Fab fragment. Journal of Structural Biology. 111: 234-244. PMID 8003384 DOI: 10.1006/Jsbi.1993.1053 |
0.669 |
|
1993 |
Boisset N, Penczek P, Pochon F, Frank J, Lamy J. Three-dimensional Architecture of Human α2-Macroglobulin Transformed with Methylamine Journal of Molecular Biology. 232: 522-529. PMID 7688427 DOI: 10.1006/Jmbi.1993.1408 |
0.65 |
|
1992 |
Srivastava S, Verschoor A, Frank J. Eukaryotic initiation factor 3 does not prevent association through physical blockage of the ribosomal subunit-subunit interface Journal of Molecular Biology. 226: 301-304. PMID 1640449 DOI: 10.1016/0022-2836(92)90946-H |
0.354 |
|
1992 |
Morgan DG, Grant RA, Chiu W, Frank J. Patch averaging of electron images of GP32*I crystals with variable thickness Journal of Structural Biology. 108: 245-256. PMID 1335748 DOI: 10.1016/1047-8477(92)90025-6 |
0.453 |
|
1992 |
Radermacher M, Wagenknecht T, Grassucci R, Frank J, Iniu M, Chadwick C, Fleischer S. Cryo-EM of the native structure of the calcium release channel/ryanodine receptor from sarcoplasmic reticulum Biophysical Journal. 61: 936-940. PMID 1316182 DOI: 10.1016/S0006-3495(92)81900-8 |
0.31 |
|
1992 |
Boisset N, Grassucci R, Penczek P, Delain E, Pochon F, Frank J, Lamy JN. Three-dimensional reconstruction of a complex of human α2-macroglobulin with monomaleimido nanogold (Au1.4nm) embedded in ice Journal of Structural Biology. 109: 39-45. PMID 1283687 DOI: 10.1016/1047-8477(92)90065-I |
0.654 |
|
1992 |
Penczek PA, Radermacher M, Frank J. Three-dimensional reconstruction of single particles embedded in ice. Ultramicroscopy. 40: 33-53. DOI: 10.1016/0304-3991(92)90233-A |
0.31 |
|
1991 |
Frank J, Penczek P, Grassucci R, Srivastava S. Three-dimensional reconstruction of the 70S Escherichia coli ribosome in ice: the distribution of ribosomal RNA. Journal of Cell Biology. 115: 597-605. PMID 1918155 DOI: 10.1083/Jcb.115.3.597 |
0.388 |
|
1990 |
Verschoor A, Frank J. Three-dimensional structure of the mammalian cytoplasmic ribosome. Journal of Molecular Biology. 214: 737-749. PMID 2388265 DOI: 10.1016/0022-2836(90)90289-X |
0.401 |
|
1990 |
Boisset N, Taveau JC, Lamy J, Wagenknecht T, Radermacher M, Frank J. Three-dimensional reconstruction of native Androctonus australis hemocyanin Journal of Molecular Biology. 216: 743-760. PMID 2258938 DOI: 10.1016/0022-2836(90)90396-4 |
0.663 |
|
1990 |
Carazo JM, Rivera FF, Zapata EL, Radermacher M, Frank J. Fuzzy sets-based classification of electron microscopy images of biological macromolecules with an application to ribosomal particles. Journal of Microscopy. 157: 187-203. PMID 2179560 DOI: 10.1111/J.1365-2818.1990.Tb02958.X |
0.646 |
|
1989 |
Frank J, Chiu W, Degn L. The characterization of structural variations within a crystal field. Ultramicroscopy. 26: 345-60. PMID 3238812 DOI: 10.1016/0304-3991(88)90234-3 |
0.451 |
|
1989 |
Verschoor A, Zhang NY, Wagenknecht T, Obrig T, Radermacher M, Frank J. Three-dimensional reconstruction of mammalian 40 S ribosomal subunit Journal of Molecular Biology. 209: 115-126. PMID 2810364 DOI: 10.1016/0022-2836(89)90175-7 |
0.38 |
|
1989 |
Carazo JM, Wagenknecht T, Frank J. Variations of the three-dimensional structure of the Escherichia coli ribosome in the range of overlap views. An application of the methods of multicone and local single-cone three-dimensional reconstruction Biophysical Journal. 55: 465-477. PMID 2649164 DOI: 10.1016/S0006-3495(89)82840-1 |
0.697 |
|
1989 |
Wagenknecht T, Carazo JM, Radermacher M, Frank J. Three-dimensional reconstruction of the ribosome from Escherichia coli Biophysical Journal. 55: 455-464. PMID 2649163 DOI: 10.1016/S0006-3495(89)82839-5 |
0.71 |
|
1989 |
Wagenknecht T, Grassucci R, Frank J, Saito A, Inui M, Fleischer S. Three-dimensional architecture of the calcium channel/foot structure of sarcoplasmic reticulum Nature. 338: 167-170. PMID 2537473 DOI: 10.1038/338167A0 |
0.313 |
|
1989 |
Frank J. Image analysis of single macromolecules Electron Microscopy Reviews. 2: 53-74. PMID 2491342 DOI: 10.1016/0892-0354(89)90010-5 |
0.367 |
|
1988 |
Carazo JM, Frank J. Three-dimensional matching of macromolecular structures obtained from electron microscopy: an application to the 70S and 50S E. coli ribosomal particles. Ultramicroscopy. 25: 13-22. PMID 3291355 DOI: 10.1016/0304-3991(88)90401-9 |
0.694 |
|
1988 |
Frank J, Verschoor A, Wagenknecht T, Radermacher M, Carazo JM. A new non-crystallographic image-processing technique reveals the architecture of ribosomes Trends in Biochemical Sciences. 13: 123-127. PMID 3075375 DOI: 10.1016/0968-0004(88)90063-1 |
0.703 |
|
1988 |
Frank J, Radermacher M, Wagenknecht T, Verschoor A. Studying ribosome structure by electron microscopy and computer-image processing Methods in Enzymology. 164: 3-35. PMID 3071670 DOI: 10.1016/S0076-6879(88)64032-8 |
0.394 |
|
1988 |
Wagenknecht T, Frank J, Boublik M, Nurse K, Ofengand J. Direct localization of the tRNA-anticodon interaction site on the Escherichia coli 30 S ribosomal subunit by electron microscopy and computerized image averaging Journal of Molecular Biology. 203: 753-760. PMID 3062179 DOI: 10.1016/0022-2836(88)90207-0 |
0.404 |
|
1988 |
Carazo JM, Wagenknecht T, Radermacher M, Mandiyan V, Boublik M, Frank J. Three-dimensional structure of 50 S Escherichia coli ribosomal subunits depleted of proteins L7/L12 Journal of Molecular Biology. 201: 393-404. PMID 3047401 DOI: 10.1016/0022-2836(88)90146-5 |
0.711 |
|
1988 |
Frank J, Bretaudiere JP, Carazo JM, Verschoor A, Wagenknecht T. Classification of images of biomolecular assemblies: a study of ribosomes and ribosomal subunits of Escherichia coli Journal of Microscopy. 150. PMID 3045323 DOI: 10.1111/J.1365-2818.1988.Tb04602.X |
0.684 |
|
1988 |
Boisset N, Frank J, Taveau JC, Billiald P, Motta G, Lamy J, Sizaret PY, Lamy J. Intermolecular localization of epitopes within an oligomeric protein by immunoelectron microscopy and image processing Proteins. 3: 161-183. PMID 2474818 DOI: 10.1002/Prot.340030305 |
0.678 |
|
1988 |
Saito A, Inui M, Radermacher M, Frank J, Fleischer S. Ultrastructure of the calcium release channel of sarcoplasmic reticulum. Journal of Cell Biology. 107: 211-219. PMID 2455723 DOI: 10.1083/Jcb.107.1.211 |
0.335 |
|
1988 |
Wagenknecht T, Grassucci R, Frank J. Electron microscopy and computer image averaging of ice-embedded large ribosomal subunits from Escherichia coli Journal of Molecular Biology. 199: 137-147. PMID 2451023 DOI: 10.1016/0022-2836(88)90384-1 |
0.397 |
|
1987 |
Radermacher M, Wagenknecht T, Verschoor A, Frank J. Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli Journal of Microscopy. 146. PMID 3302267 DOI: 10.1111/J.1365-2818.1987.Tb01333.X |
0.344 |
|
1987 |
Mannella CA, Frank J, Delihas N. Interrelatedness of 5S RNA sequences investigated by correspondence analysis. Journal of Molecular Evolution. 24: 228-235. PMID 3106638 DOI: 10.1007/Bf02111236 |
0.572 |
|
1987 |
Mannella CA, Ribeiro AJ, Frank J. Cytochrome c binds to lipid domains in arrays of mitochondrial outer membrane channels. Biophysical Journal. 51: 221-6. PMID 3030457 DOI: 10.1016/S0006-3495(87)83327-1 |
0.571 |
|
1987 |
Frank J, McEwen BF, Radermacher M, Turner JN, Rieder CL. Three-dimensional tomographic reconstruction in high voltage electron microscopy Journal of Electron Microscopy Technique. 6: 193-205. DOI: 10.1002/Jemt.1060060210 |
0.31 |
|
1987 |
Radermacher M, Wagenknecht T, Verschoor A, Frank J. Three-dimensional structure of the large ribosomal subunit from Escherichia coli. The Embo Journal. 6: 1107-1114. DOI: 10.1002/J.1460-2075.1987.Tb04865.X |
0.432 |
|
1986 |
Frank J, Verschoor A, Wagenknecht T, Radermacher M, Rosenthal M, Boublik M. New strategies for determining ribosomal subunit structure from electron micrographs by single particle averaging methods. Biophysical Journal. 49: 9-11. PMID 19431662 DOI: 10.1016/S0006-3495(86)83571-8 |
0.369 |
|
1986 |
Mannella CA, Ribeiro A, Frank J. Structure of the Channels in the Outer Mitochondrial Membrane: Electron Microscopic Studies of the Periodic Arrays Induced by Phospholipase a2 Treatment of the Neurospora membrane Biophysical Journal. 49: 307-318. PMID 19431637 DOI: 10.1016/S0006-3495(86)83643-8 |
0.583 |
|
1986 |
Verschoor A, Frank J, Wagenknecht T, Boublik M. Computer-averaged views of the 70 S monosome from Escherichia coli Journal of Molecular Biology. 187: 581-590. PMID 3519978 DOI: 10.1016/0022-2836(86)90336-0 |
0.304 |
|
1986 |
McEwen BF, Radermacher M, Rieder CL, Frank J. Tomographic three-dimensional reconstruction of cilia ultrastructure from thick sections. Proceedings of the National Academy of Sciences of the United States of America. 83: 9040-9044. PMID 3466176 DOI: 10.1073/Pnas.83.23.9040 |
0.318 |
|
1986 |
Mannella CA, Frank J. Effect of succinylation on images of negatively stained arrays of mitochondrial outer membrane channels. Journal of Ultrastructure and Molecular Structure Research. 96: 31-40. PMID 2445865 DOI: 10.1016/0889-1605(86)90005-4 |
0.561 |
|
1986 |
Tsuji M, Frank J, Manley RSJ. Image analysis in the electron microscopy of cellulose protofibrils. II: Digital correlation methods Colloid and Polymer Science. 264: 89-96. DOI: 10.1007/Bf01410311 |
0.334 |
|
1985 |
Verschoor A, Frank J, Boublik M. Investigation of the 50 S ribosomal subunit by electron microscopy and image analysis. Journal of Ultrastructure Research. 92: 180-189. PMID 3913778 DOI: 10.1016/0889-1605(85)90045-X |
0.319 |
|
1985 |
Kim CH, Radermacher M, Kessel M, Frank J, King TE. Three-dimensional reconstruction of cytochrome oxidase vesicle crystals prepared by cholate solubilization. Journal of Inorganic Biochemistry. 23: 163-9. PMID 2991453 DOI: 10.1016/0162-0134(85)85021-2 |
0.304 |
|
1984 |
Mannella CA, Frank J. Electron Microscopic Stains as Probes of the Surface Charge of Mitochondrial Outer Membrane Channels Biophysical Journal. 45: 139-141. PMID 19431542 DOI: 10.1016/S0006-3495(84)84140-5 |
0.598 |
|
1984 |
Woodcock CLF, Frank J. Nucleosome mass distribution using image averaging Journal of Ultrastructure Research. 89: 295-302. PMID 6544891 DOI: 10.1016/S0022-5320(84)80045-3 |
0.307 |
|
1984 |
Radermacher M, Frank J. Representation of three-dimensionally reconstructed objects in electron microscopy by surfaces of equal density. Journal of Microscopy. 136: 77-85. PMID 6392559 DOI: 10.1111/J.1365-2818.1984.Tb02547.X |
0.33 |
|
1984 |
Verschoor A, Frank J, Radermacher M, Wagenknecht T, Boublik M. Three-dimensional reconstruction of the 30 S ribosomal subunit from randomly oriented particles Journal of Molecular Biology. 178: 677-695. PMID 6387155 DOI: 10.1016/0022-2836(84)90245-6 |
0.318 |
|
1984 |
Wagenknecht T, Frank J. Localization of lipoyl-bearing domains in the α-ketoglutarate dehydrogenase multienzyme complex Biochemistry. 23: 3383-3389. PMID 6380587 DOI: 10.1021/Bi00310A001 |
0.359 |
|
1984 |
Mannella CA, Frank J. Negative staining characteristics of arrays of mitochondrial pore protein: use of correspondence analysis to classify different staining patterns. Ultramicroscopy. 13: 93-102. PMID 6206632 DOI: 10.1016/0304-3991(84)90060-3 |
0.578 |
|
1984 |
Frank J. The role of multivariate image analysis in solving the architecture of the limulus polyphemus hemocyanin molecule Ultramicroscopy. 13: 153-164. DOI: 10.1016/0304-3991(84)90065-2 |
0.324 |
|
1983 |
Frank J, van Heel M. Correspondence analysis of aligned images of biological particles. Journal of Molecular Biology. 161: 134-7. PMID 7154073 DOI: 10.1016/0022-2836(82)90282-0 |
0.578 |
|
1983 |
Mannella CA, Colombini M, Frank J. Structural and functional evidence for multiple channel complexes in the outer membrane of Neurospora crassa mitochondria. Proceedings of the National Academy of Sciences of the United States of America. 80: 2243-7. PMID 6300902 DOI: 10.1073/Pnas.80.8.2243 |
0.569 |
|
1982 |
Mannella CA, Frank J. Effects of divalent metal ions and chelators on the structure of outer mitochondrial membranes from neurospora crassa. Biophysical Journal. 37: 3-4. PMID 19431484 DOI: 10.1016/S0006-3495(82)84569-4 |
0.543 |
|
1982 |
Lamy J, Sizaret PY, Frank J, Verschoor A, Feldmann R, Bonaventura J. Architecture of Limulus polyphemus hemocyanin. Biochemistry. 21: 6825-33. PMID 7159564 DOI: 10.1021/Bi00269A031 |
0.316 |
|
1982 |
Zingsheim HP, Barrantes FJ, Frank J, Hänicke W, Neugebauer DC. Direct structural localization of two toxin-recognition sites on an ACh receptor protein Nature. 299: 81-84. PMID 7110329 DOI: 10.1038/299081A0 |
0.32 |
|
1982 |
Frank J, Verschoor A, Boublik M. Multivariate statistical analysis of ribosome electron micrographs. L and R lateral views of the 40 S subunit from HeLa cells. Journal of Molecular Biology. 161: 107-133. PMID 6185684 DOI: 10.1016/0022-2836(82)90281-9 |
0.312 |
|
1982 |
Zingsheim HP, Neugebauer DC, Frank J, Hänicke W, Barrantes FJ. Dimeric arrangement and structure of the membrane-bound acetylcholine receptor studied by electron microscopy. The Embo Journal. 1: 541-547. DOI: 10.1002/J.1460-2075.1982.Tb01206.X |
0.357 |
|
1981 |
Frank J, Verschoor A, Boublik M. Computer Averaging of Electron Micrographs of 40S Ribosomal Subunits Science. 214: 1353-1355. PMID 7313694 DOI: 10.1126/Science.7313694 |
0.371 |
|
1981 |
Frank J. Three-dimensional reconstruction of single molecules Methods in Cell Biology. 22: 325-344. PMID 7022121 DOI: 10.1016/S0091-679X(08)61882-8 |
0.304 |
|
1981 |
Frank J, Shimkin B, Dowse H. SPIDER—A modular software system for electron image processing Ultramicroscopy. 6: 343-357. DOI: 10.1016/S0304-3991(81)80221-5 |
0.318 |
|
1981 |
Frank J. chapter 12 Introduction Methods in Cell Biology. 22: 199-213. DOI: 10.1016/S0091-679X(08)61878-6 |
0.308 |
|
1980 |
Zingsheim HP, Neugebauer -Ch. D, Barrantes FJ, Frank J. Structural details of membrane-bound acetylcholine receptor from Torpedo marmorata Proceedings of the National Academy of Sciences of the United States of America. 77: 952-956. PMID 6928692 DOI: 10.1073/Pnas.77.2.952 |
0.329 |
|
1979 |
Frank J. Image Analysis In Electron Microscopy Journal of Microscopy. 117: 25-38. DOI: 10.1111/J.1365-2818.1979.Tb00229.X |
0.324 |
|
1975 |
Frank J. Controlled focusing and stigmating in the conventional and scanning transmission electron microscope Journal of Physics E: Scientific Instruments. 8: 582-587. DOI: 10.1088/0022-3735/8/7/014 |
0.324 |
|
1969 |
Hoppe W, Langer R, Frank J, Feltynowski A. [Image differentiation procedures in electron microscopy]. Die Naturwissenschaften. 56: 267-72. PMID 5360874 DOI: 10.1007/Bf00633921 |
0.549 |
|
1969 |
Langer R, Formanek S, Frank J, Martin HH, Hoppe W. [Structure of the murein sacculus of Spirillum serpens. Quantitative electron microscopy studies at high resolution]. Hoppe-Seyler's Zeitschrift FüR Physiologische Chemie. 350: 1173-4. PMID 5352337 |
0.543 |
|
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