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Alexandr A. Kalinin, Ph.D. - Publications

Affiliations: 
2004-2010 Applied Mathematics Novosibirsk State Technical University 
 2012-2013 Statistics University of California, Los Angeles, Los Angeles, CA 
 2013- Computational Medicine and Bioinformatics University of Michigan, Ann Arbor, Ann Arbor, MI 
 2019-2021 Shenzhen Research Institute of Big Data The Chinese University of Hong Kong, Shenzhen 
 2022- Imaging Platform Broad Institute of MIT and Harvard, USA 
Area:
Biomedical imaging
Website:
https://alxndrkalinin.github.io/
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17 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Serrano E, Chandrasekaran SN, Bunten D, Brewer KI, Tomkinson J, Kern R, Bornholdt M, Fleming S, Pei R, Arevalo J, Tsang H, Rubinetti V, Tromans-Coia C, Becker T, Weisbart E, ... ... Kalinin AA, et al. Reproducible image-based profiling with Pycytominer. Arxiv. PMID 38045474  0.636
2022 Kalinin AA, Palanimalai S, Zhu J, Wu W, Devraj N, Ye C, Ponarul N, Husain SS, Dinov ID. SOCRAT: a Dynamic Web Toolbox for Interactive Data Processing, Analysis and Visualization. Information (Basel). 13. PMID 37009525 DOI: 10.3390/info13110547  0.504
2022 Lee BD, Gitter A, Greene CS, Raschka S, Maguire F, Titus AJ, Kessler MD, Lee AJ, Chevrette MG, Stewart PA, Britto-Borges T, Cofer EM, Yu KH, Carmona JJ, Fertig EJ, ... Kalinin AA, et al. Ten quick tips for deep learning in biology. Plos Computational Biology. 18: e1009803. PMID 35324884 DOI: 10.1371/journal.pcbi.1009803  0.336
2021 Solovyev R, Kalinin AA, Gabruseva T. 3D convolutional neural networks for stalled brain capillary detection. Computers in Biology and Medicine. 141: 105089. PMID 34920160 DOI: 10.1016/j.compbiomed.2021.105089  0.242
2021 Kalinin AA, Hou X, Ade AS, Fon GV, Meixner W, Higgins GA, Sexton JZ, Wan X, Dinov ID, O'Meara MJ, Athey BD. Valproic Acid-Induced Changes of 4D Nuclear Morphology in Astrocyte Cells. Molecular Biology of the Cell. mbcE20080502. PMID 33909457 DOI: 10.1091/mbc.E20-08-0502  0.661
2020 Buslaev A, Iglovikov VI, Khvedchenya E, Parinov A, Druzhinin M, Kalinin AA. Albumentations: Fast and Flexible Image Augmentations Information. 11: 125. DOI: 10.3390/Info11020125  0.423
2018 Tang M, Gao C, Goutman SA, Kalinin A, Mukherjee B, Guan Y, Dinov ID. Model-Based and Model-Free Techniques for Amyotrophic Lateral Sclerosis Diagnostic Prediction and Patient Clustering. Neuroinformatics. PMID 30460455 DOI: 10.1007/S12021-018-9406-9  0.596
2018 Kalinin AA, Allyn-Feuer A, Ade A, Fon GV, Meixner W, Dilworth D, Husain SS, de Wet JR, Higgins GA, Zheng G, Creekmore A, Wiley JW, Verdone JE, Veltri RW, Pienta KJ, et al. Publisher Correction: 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. Scientific Reports. 8: 16142. PMID 30367081 DOI: 10.1038/S41598-018-33574-W  0.666
2018 Zheng G, Kalinin AA, Dinov ID, Meixner W, Zhu S, Wiley JW. Hypothesis: Caco-2 cell rotational 3D mechanogenomic turing patterns have clinical implications to colon crypts. Journal of Cellular and Molecular Medicine. PMID 30255651 DOI: 10.1111/Jcmm.13853  0.601
2018 Kalinin AA, Allyn-Feuer A, Ade A, Fon GV, Meixner W, Dilworth D, Husain SS, de Wett JR, Higgins GA, Zheng G, Creekmore A, Wiley JW, Verdone JE, Veltri RW, Pienta KJ, et al. 3D Shape Modeling for Cell Nuclear Morphological Analysis and Classification. Scientific Reports. 8: 13658. PMID 30209281 DOI: 10.1038/S41598-018-31924-2  0.685
2018 Gao C, Sun H, Wang T, Tang M, Bohnen NI, Müller MLTM, Herman T, Giladi N, Kalinin A, Spino C, Dauer W, Hausdorff JM, Dinov ID. Model-based and Model-free Machine Learning Techniques for Diagnostic Prediction and Classification of Clinical Outcomes in Parkinson's Disease. Scientific Reports. 8: 7129. PMID 29740058 DOI: 10.1038/S41598-018-24783-4  0.611
2018 Kalinin AA, Higgins GA, Reamaroon N, Soroushmehr S, Allyn-Feuer A, Dinov ID, Najarian K, Athey BD. Deep learning in pharmacogenomics: from gene regulation to patient stratification. Pharmacogenomics. PMID 29697304 DOI: 10.2217/Pgs-2018-0008  0.673
2018 Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Ferrero E, Agapow PM, Zietz M, Hoffman MM, Xie W, Rosen GL, Lengerich BJ, Israeli J, Lanchantin J, et al. Opportunities and obstacles for deep learning in biology and medicine. Journal of the Royal Society, Interface. 15. PMID 29618526 DOI: 10.1098/Rsif.2017.0387  0.676
2017 Kalinin AA, Palanimalai S, Dinov ID. SOCRAT Platform Design: A Web Architecture for Interactive Visual Analytics Applications. Proceedings of the 2nd Workshop On Human-in-the-Loop Data Analytics. Workshop On Human-in-the-Loop Data Analytics (2nd : 2017 : Chicago, Ill.). 2017. PMID 29630069 DOI: 10.1145/3077257.3077262  0.533
2016 Dinov ID, Siegrist K, Pearl DK, Kalinin A, Christou N. Probability Distributome: A Web Computational Infrastructure for Exploring the Properties, Interrelations, and Applications of Probability Distributions. Computational Statistics. 31: 559-577. PMID 27158191 DOI: 10.1007/S00180-015-0594-6  0.548
2015 Husain SS, Kalinin A, Truong A, Dinov ID. SOCR data dashboard: an integrated big data archive mashing medicare, labor, census and econometric information. Journal of Big Data. 2. PMID 26236573 DOI: 10.1186/s40537-015-0018-z  0.514
2015 Dinov ID, Siegrist K, Pearl DK, Kalinin A, Christou N. Probability Distributome: a web computational infrastructure for exploring the properties, interrelations, and applications of probability distributions Computational Statistics. DOI: 10.1007/s00180-015-0594-6  0.503
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