Frédéric Chain - Publications

Affiliations: 
2004-2009 Biology University of Massachusetts Lowell, Lowell, MA, United States 

24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Thorburn DJ, Sagonas K, Binzer-Panchal M, Chain FJJ, Feulner PGD, Bornberg-Bauer E, Reusch TBH, Samonte-Padilla IE, Milinski M, Lenz TL, Eizaguirre C. Origin matters: Using a local reference genome improves measures in population genomics. Molecular Ecology Resources. PMID 37489282 DOI: 10.1111/1755-0998.13838  0.474
2022 Metivier JC, Chain FJJ. Diversity in Expression Biases of Lineage-Specific Genes During Development and Anhydrobiosis Among Tardigrade Species. Evolutionary Bioinformatics Online. 18: 11769343221140277. PMID 36578471 DOI: 10.1177/11769343221140277  0.333
2022 Gill SE, Chain FJJ. Very Low Rates of Spontaneous Gene Deletions and Gene Duplications in Dictyostelium discoideum. Journal of Molecular Evolution. 91: 24-32. PMID 36484794 DOI: 10.1007/s00239-022-10081-1  0.309
2021 Luna SK, Chain FJJ. Lineage-Specific Genes and Family Expansions in Dictyostelid Genomes Display Expression Bias and Evolutionary Diversification during Development. Genes. 12. PMID 34681022 DOI: 10.3390/genes12101628  0.387
2021 Chain FJJ, Assis R. BLAST from the past: impacts of evolving approaches on studies of evolution by gene duplication. Genome Biology and Evolution. PMID 34164667 DOI: 10.1093/gbe/evab149  0.405
2021 Huang KM, Chain FJJ. Copy number variations and young duplicate genes have high methylation levels in sticklebacks. Evolution; International Journal of Organic Evolution. PMID 33527399 DOI: 10.1111/evo.14184  0.338
2020 Suresh S, Crease TJ, Cristescu ME, Chain FJJ. Alternative splicing is highly variable among Daphnia pulex lineages in response to acute copper exposure Bmc Genomics. 21: 1-14. PMID 32586292 DOI: 10.1186/S12864-020-06831-4  0.342
2020 Schmitz JF, Chain FJJ, Bornberg-Bauer E. Evolution of novel genes in three-spined stickleback populations. Heredity. PMID 32499660 DOI: 10.1038/S41437-020-0319-7  0.402
2019 Huang Y, Feulner PGD, Eizaguirre C, Lenz TL, Bornberg-Bauer E, Milinski M, Reusch TBH, Chain FJJ. Genome-wide genotype-expression relationships reveal both copy number and single nucleotide differentiation contribute to differential gene expression between stickleback ecotypes. Genome Biology and Evolution. PMID 31298693 DOI: 10.1093/Gbe/Evz148  0.386
2015 Feulner PG, Chain FJ, Panchal M, Huang Y, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M. Correction: Genomics of Divergence along a Continuum of Parapatric Population Differentiation. Plos Genetics. 11: e1005414. PMID 26226517 DOI: 10.1371/Journal.Pgen.1005414  0.339
2015 Chain FJ. Sex-Biased Expression of Young Genes in Silurana (Xenopus) tropicalis. Cytogenetic and Genome Research. 145: 265-77. PMID 26065714 DOI: 10.1159/000430942  0.428
2015 Feulner PG, Chain FJ, Panchal M, Huang Y, Eizaguirre C, Kalbe M, Lenz TL, Samonte IE, Stoll M, Bornberg-Bauer E, Reusch TB, Milinski M. Genomics of divergence along a continuum of parapatric population differentiation. Plos Genetics. 11: e1004966. PMID 25679225 DOI: 10.1371/Journal.Pgen.1004966  0.494
2014 Chain FJ, Feulner PG, Panchal M, Eizaguirre C, Samonte IE, Kalbe M, Lenz TL, Stoll M, Bornberg-Bauer E, Milinski M, Reusch TB. Extensive copy-number variation of young genes across stickleback populations. Plos Genetics. 10: e1004830. PMID 25474574 DOI: 10.1371/Journal.Pgen.1004830  0.448
2014 Chain FJ, Feulner PG. Ecological and evolutionary implications of genomic structural variations. Frontiers in Genetics. 5: 326. PMID 25278961 DOI: 10.3389/fgene.2014.00326  0.406
2013 Guo B, Chain FJ, Bornberg-Bauer E, Leder EH, Merilä J. Genomic divergence between nine- and three-spined sticklebacks. Bmc Genomics. 14: 756. PMID 24188282 DOI: 10.1186/1471-2164-14-756  0.421
2013 Stiebens VA, Merino SE, Roder C, Chain FJ, Lee PL, Eizaguirre C. Living on the edge: how philopatry maintains adaptive potential. Proceedings. Biological Sciences. 280: 20130305. PMID 23720544 DOI: 10.1098/rspb.2013.0305  0.339
2013 Bewick AJ, Chain FJ, Zimmerman LB, Sesay A, Gilchrist MJ, Owens ND, Seifertova E, Krylov V, Macha J, Tlapakova T, Kubickova S, Cernohorska H, Zarsky V, Evans BJ. A large pseudoautosomal region on the sex chromosomes of the frog Silurana tropicalis. Genome Biology and Evolution. 5: 1087-98. PMID 23666865 DOI: 10.1093/Gbe/Evt073  0.642
2013 Shen JJ, Dushoff J, Bewick AJ, Chain FJ, Evans BJ. Genomic dynamics of transposable elements in the western clawed frog (Silurana tropicalis). Genome Biology and Evolution. 5: 998-1009. PMID 23645600 DOI: 10.1093/Gbe/Evt065  0.66
2013 Feulner PG, Chain FJ, Panchal M, Eizaguirre C, Kalbe M, Lenz TL, Mundry M, Samonte IE, Stoll M, Milinski M, Reusch TB, Bornberg-Bauer E. Genome-wide patterns of standing genetic variation in a marine population of three-spined sticklebacks. Molecular Ecology. 22: 635-49. PMID 22747593 DOI: 10.1111/J.1365-294X.2012.05680.X  0.465
2012 Bewick AJ, Chain FJ, Heled J, Evans BJ. The pipid root. Systematic Biology. 61: 913-26. PMID 22438331 DOI: 10.1093/Sysbio/Sys039  0.643
2011 Chain FJ, Dushoff J, Evans BJ. The odds of duplicate gene persistence after polyploidization. Bmc Genomics. 12: 599. PMID 22151890 DOI: 10.1186/1471-2164-12-599  0.633
2008 Chain FJ, Ilieva D, Evans BJ. Single-species microarrays and comparative transcriptomics. Plos One. 3: e3279. PMID 18815615 DOI: 10.1371/Journal.Pone.0003279  0.613
2008 Chain FJ, Ilieva D, Evans BJ. Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization. Bmc Evolutionary Biology. 8: 43. PMID 18261230 DOI: 10.1186/1471-2148-8-43  0.676
2006 Chain FJ, Evans BJ. Multiple mechanisms promote the retained expression of gene duplicates in the tetraploid frog Xenopus laevis. Plos Genetics. 2: e56. PMID 16683033 DOI: 10.1371/Journal.Pgen.0020056  0.64
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