Patrick Zulkowski, Ph.D. - Related publications

Berkeley City College 
Geometry, String Theory, nonequilibrium stat. mech.
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Kalyuzhnyi YV, Nezbeda I, Cummings PT. Integral equation theory for mixtures of spherical and patchy colloids. 2. Numerical results. Soft Matter. PMID 33662078 DOI: 10.1039/d0sm02284e   
2021 Han Y, Jin J, Voth GA. Constructing many-body dissipative particle dynamics models of fluids from bottom-up coarse-graining. The Journal of Chemical Physics. 154: 084122. PMID 33639745 DOI: 10.1063/5.0035184   
2021 Kobrin B, Yang Z, Kahanamoku-Meyer GD, Olund CT, Moore JE, Stanford D, Yao NY. Many-Body Chaos in the Sachdev-Ye-Kitaev Model. Physical Review Letters. 126: 030602. PMID 33543957 DOI: 10.1103/PhysRevLett.126.030602   
2021 Goodrich CP, King EM, Schoenholz SS, Cubuk ED, Brenner MP. Designing self-assembling kinetics with differentiable statistical physics models. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33653960 DOI: 10.1073/pnas.2024083118   
2021 Brotzakis ZF, Vendruscolo M, Bolhuis PG. A method of incorporating rate constants as kinetic constraints in molecular dynamics simulations. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33376207 DOI: 10.1073/pnas.2012423118   
2021 Borman V, Belogorlov A, Tronin V. The Formation and Decay of an Unstable State of a Suspension of Hydrophobic Nanoporous Particles under Rapid Compression. Nanomaterials (Basel, Switzerland). 11. PMID 33406671 DOI: 10.3390/nano11010102   
2021 Smith JS, Nebgen B, Mathew N, Chen J, Lubbers N, Burakovsky L, Tretiak S, Nam HA, Germann T, Fensin S, Barros K. Automated discovery of a robust interatomic potential for aluminum. Nature Communications. 12: 1257. PMID 33623036 DOI: 10.1038/s41467-021-21376-0   
2021 Longhi S. Maryland model in optical waveguide lattices. Optics Letters. 46: 637-640. PMID 33528428 DOI: 10.1364/OL.414389   
2021 GrandPre T, Klymko K, Mandadapu KK, Limmer DT. Entropy production fluctuations encode collective behavior in active matter. Physical Review. E. 103: 012613. PMID 33601608 DOI: 10.1103/PhysRevE.103.012613   
2021 Rudzinski JF, Kloth S, Wörner S, Pal T, Kremer K, Bereau T, Vogel M. Dynamical properties across different coarse-grained models for ionic liquids. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 33592598 DOI: 10.1088/1361-648X/abe6e1   
2021 Salama A, Sun S, Zhang T. A Unified, One Fluid Model for the Drag of Fluid and Solid Dispersals by Permeate Flux towards a Membrane Surface. Membranes. 11. PMID 33671756 DOI: 10.3390/membranes11020154   
2021 Jewett AI, Stelter D, Lambert J, Saladi SM, Roscioni OM, Ricci M, Autin L, Maritan M, Bashusqeh SM, Keyes T, Dame RT, Shea JE, Jensen GJ, Goodsell DS. Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics. Journal of Molecular Biology. 166841. PMID 33539886 DOI: 10.1016/j.jmb.2021.166841   
2021 de Luzuriaga IO, Lopez X, Gil A. Learning to Model G-Quadruplexes: Current Methods and Perspectives. Annual Review of Biophysics. PMID 33561349 DOI: 10.1146/annurev-biophys-060320-091827   
2021 Huang S, Sun C, Purohit PK, Reina C. Harnessing fluctuation theorems to discover free energy and dissipation potentials from non-equilibrium data. Journal of the Mechanics and Physics of Solids. 149. PMID 33612859 DOI: 10.1016/j.jmps.2021.104323   
2021 McKenzie ME, Deng B, Van Hoesen DC, Xia X, Baker DE, Rezikyan A, Youngman RE, Kelton KF. Nucleation pathways in barium silicate glasses. Scientific Reports. 11: 69. PMID 33420156 DOI: 10.1038/s41598-020-79749-2   
2021 Hosseini SA, Berg P, Huang F, Roloff C, Janiga G, Thévenin D. Central moments multiple relaxation time LBM for hemodynamic simulations in intracranial aneurysms: An in-vitro validation study using PIV and PC-MRI. Computers in Biology and Medicine. 131: 104251. PMID 33581475 DOI: 10.1016/j.compbiomed.2021.104251   
2021 Callaham JL, Koch JV, Brunton BW, Kutz JN, Brunton SL. Learning dominant physical processes with data-driven balance models. Nature Communications. 12: 1016. PMID 33589607 DOI: 10.1038/s41467-021-21331-z   
2021 Camacho M, Edwards B, Engheta N. A single inverse-designed photonic structure that performs parallel computing. Nature Communications. 12: 1466. PMID 33674576 DOI: 10.1038/s41467-021-21664-9   
2021 Shen JL, Tsai MY, Schafer NP, Wolynes PG. Modeling Protein Aggregation Kinetics: The Method of Second Stochasticization. The Journal of Physical Chemistry. B. PMID 33476161 DOI: 10.1021/acs.jpcb.0c10331   
2021 Culbreth G, Bologna M, West BJ, Grigolini P. Caputo Fractional Derivative and Quantum-Like Coherence. Entropy (Basel, Switzerland). 23. PMID 33572106 DOI: 10.3390/e23020211   
2021 Tah I, Sharp TA, Liu AJ, Sussman DM. Quantifying the link between local structure and cellular rearrangements using information in models of biological tissues. Soft Matter. PMID 33463648 DOI: 10.1039/d0sm01575j   
2021 Subramanian S, Murray SM. Pattern selection in reaction diffusion systems. Physical Review. E. 103: 012215. PMID 33601645 DOI: 10.1103/PhysRevE.103.012215   
2021 Liu X, Behdinan K. Innovative analytical model for temperature prediction of front-end accessory drive. Scientific Reports. 11: 1476. PMID 33446691 DOI: 10.1038/s41598-020-79986-5   
2021 Mondal K, Kadolkar C. Q = 0 order in quantum kagome Heisenberg antiferromagnet. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 33455949 DOI: 10.1088/1361-648X/abdc8e   
2021 Chaimovich M, Chaimovich A. Relative Resolution: A Computationally Efficient Implementation in LAMMPS. Journal of Chemical Theory and Computation. 17: 1045-1059. PMID 33512166 DOI: 10.1021/acs.jctc.0c01003   
2021 Li Y, Duan J, Liu X. Machine learning framework for computing the most probable paths of stochastic dynamical systems. Physical Review. E. 103: 012124. PMID 33601611 DOI: 10.1103/PhysRevE.103.012124   
2021 He X, Gong Z, Wu B, Liu J. Negative Zero-Point-Energy Parameter in the Meyer-Miller Mapping Model for Nonadiabatic Dynamics. The Journal of Physical Chemistry Letters. 2496-2501. PMID 33667108 DOI: 10.1021/acs.jpclett.1c00232   
2021 Gilioli G, Colli P, Colturato M, Gervasio P, Sperandio G. A nonlinear model for stage-structured population dynamics with nonlocal density-dependent regulation: An application to the fall armyworm moth. Mathematical Biosciences. 108573. PMID 33662404 DOI: 10.1016/j.mbs.2021.108573   
2021 Barak O, Romani S. Mapping Low-Dimensional Dynamics to High-Dimensional Neural Activity: A Derivation of the Ring Model from the Neural Engineering Framework. Neural Computation. 1-26. PMID 33513322 DOI: 10.1162/neco_a_01361   
2021 Uratani H, Yoshikawa T, Nakai H. Trajectory Surface Hopping Approach to Condensed-Phase Nonradiative Relaxation Dynamics Using Divide-and-Conquer Spin-Flip Time-Dependent Density-Functional Tight Binding. Journal of Chemical Theory and Computation. PMID 33577323 DOI: 10.1021/acs.jctc.0c01155   
2021 Colen J, Han M, Zhang R, Redford SA, Lemma LM, Morgan L, Ruijgrok PV, Adkins R, Bryant Z, Dogic Z, Gardel ML, de Pablo JJ, Vitelli V. Machine learning active-nematic hydrodynamics. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33653956 DOI: 10.1073/pnas.2016708118   
2021 Roy A, Chatterjee K. Theoretical and computational investigations into mechanobactericidal activity of nanostructures at the bacteria-biomaterial interface: a critical review. Nanoscale. PMID 33404021 DOI: 10.1039/d0nr07976f   
2021 Li D, Tee KP, Xie L, Yu H. Time-Synchronized Control for Disturbed Systems. Ieee Transactions On Cybernetics. PMID 33661748 DOI: 10.1109/TCYB.2021.3054589   
2021 Bao J, Reisinger C, Ren P, Stockinger W. First-order convergence of Milstein schemes for McKean-Vlasov equations and interacting particle systems. Proceedings. Mathematical, Physical, and Engineering Sciences. 477: 20200258. PMID 33642922 DOI: 10.1098/rspa.2020.0258   
2021 Mu C, Wang K, Ni Z. Adaptive Learning and Sampled-Control for Nonlinear Game Systems Using Dynamic Event-Triggering Strategy. Ieee Transactions On Neural Networks and Learning Systems. PMID 33621182 DOI: 10.1109/TNNLS.2021.3057438   
2021 Zantop AW, Stark H. Multi-particle collision dynamics with a non-ideal equation of state. I. The Journal of Chemical Physics. 154: 024105. PMID 33445899 DOI: 10.1063/5.0037934   
2021 Meng F, Matsunaga D, Mahault B, Golestanian R. Magnetic Microswimmers Exhibit Bose-Einstein-like Condensation. Physical Review Letters. 126: 078001. PMID 33666487 DOI: 10.1103/PhysRevLett.126.078001   
2021 Williams JR, Tancogne-Dejean N, Ullrich CA. Time-Resolved Exciton Wave Functions from Time-Dependent Density-Functional Theory. Journal of Chemical Theory and Computation. PMID 33577734 DOI: 10.1021/acs.jctc.0c01334   
2021 Boffi NM, Slotine JE. Implicit Regularization and Momentum Algorithms in Nonlinearly Parameterized Adaptive Control and Prediction. Neural Computation. 1-84. PMID 33513321 DOI: 10.1162/neco_a_01360   
2021 Colognesi V, Ronsse R, Chatelain P. A model coupling biomechanics and fluid dynamics for the simulation of controlled flapping flight. Bioinspiration & Biomimetics. PMID 33470974 DOI: 10.1088/1748-3190/abdd9c   
2021 Zhou B, Jiang D, Dai Y, Hayat T, Alsaedi A. Stationary distribution and probability density function of a stochastic SVIS epidemic model with standard incidence and vaccination strategies. Chaos, Solitons, and Fractals. 143: 110601. PMID 33551580 DOI: 10.1016/j.chaos.2020.110601   
2021 Rosa-Raíces JL, Sun J, Bou-Rabee N, Miller TF. A generalized class of strongly stable and dimension-free T-RPMD integrators. The Journal of Chemical Physics. 154: 024106. PMID 33445902 DOI: 10.1063/5.0036954   
2021 Li Q, Yu Y, Huang RZ. Achieving thermodynamic consistency in a class of free-energy multiphase lattice Boltzmann models. Physical Review. E. 103: 013304. PMID 33601620 DOI: 10.1103/PhysRevE.103.013304   
2021 Akal I, Kusuki Y, Shiba N, Takayanagi T, Wei Z. Entanglement Entropy in a Holographic Moving Mirror and the Page Curve. Physical Review Letters. 126: 061604. PMID 33635706 DOI: 10.1103/PhysRevLett.126.061604   
2021 Makri N. Small Matrix Path Integral with Extended Memory. Journal of Chemical Theory and Computation. 17: 1-6. PMID 33430598 DOI: 10.1021/acs.jctc.0c00987   
2021 Zhang W, Yi W. Composite adaptive dynamic programming for missile interception systems with multiple constraints and less sensor requirement. Isa Transactions. PMID 33546863 DOI: 10.1016/j.isatra.2021.01.040   
2021 Araújo R, Filho LHM, Santos FAN, Coutinho-Filho MD. Geometry and molecular dynamics of the Hamiltonian mean-field model in a magnetic field. Physical Review. E. 103: 012203. PMID 33601598 DOI: 10.1103/PhysRevE.103.012203   
2021 Ford J, Seritan S, Zhu X, Sakano MN, Islam MM, Strachan A, Martínez TJ. Nitromethane Decomposition via Automated Reaction Discovery and an Corrected Kinetic Model. The Journal of Physical Chemistry. A. PMID 33569957 DOI: 10.1021/acs.jpca.0c09168   
2021 Tang Y, Bao S, Guo W. Superdiffusion of quantized vortices uncovering scaling laws in quantum turbulence. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33526696 DOI: 10.1073/pnas.2021957118   
2021 Xu F, Kenjereš S. Numerical simulations of flow patterns in the human left ventricle model with a novel dynamic mesh morphing approach based on radial basis function. Computers in Biology and Medicine. 130: 104184. PMID 33444850 DOI: 10.1016/j.compbiomed.2020.104184