| Year |
Citation |
Score |
| 2023 |
Heinrich L, Patton W, Bennett D, Ackerman D, Park G, Bogovic JA, Eckstein N, Petruncio A, Clements J, Pang S, Shan Xu C, Funke J, Korff W, Hess H, Lippincott-Schwartz J, et al. Towards Generalizable Organelle Segmentation in Volume Electron Microscopy. Microscopy and Microanalysis : the Official Journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada. 29: 975. PMID 37613645 DOI: 10.1093/micmic/ozad067.487 |
0.644 |
|
| 2023 |
Lin A, Yang R, Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Costa M, Eichler K, Bates AS, Eckstein N, Funke J, Jefferis GSXE, Murthy M. Network Statistics of the Whole-Brain Connectome of . Biorxiv : the Preprint Server For Biology. PMID 37547019 DOI: 10.1101/2023.07.29.551086 |
0.748 |
|
| 2023 |
Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Lin A, Costa M, Eichler K, Yin Y, Silversmith W, Schneider-Mizell C, Jordan CS, Brittain D, Halageri A, ... ... Funke J, et al. Neuronal wiring diagram of an adult brain. Biorxiv : the Preprint Server For Biology. PMID 37425937 DOI: 10.1101/2023.06.27.546656 |
0.711 |
|
| 2023 |
Shiu PK, Sterne GR, Spiller N, Franconville R, Sandoval A, Zhou J, Simha N, Kang CH, Yu S, Kim JS, Dorkenwald S, Matsliah A, Schlegel P, Yu SC, McKellar CE, ... ... Funke J, et al. A leaky integrate-and-fire computational model based on the connectome of the entire adult brain reveals insights into sensorimotor processing. Biorxiv : the Preprint Server For Biology. PMID 37205514 DOI: 10.1101/2023.05.02.539144 |
0.751 |
|
| 2022 |
Sheridan A, Nguyen TM, Deb D, Lee WA, Saalfeld S, Turaga SC, Manor U, Funke J. Local shape descriptors for neuron segmentation. Nature Methods. PMID 36585455 DOI: 10.1038/s41592-022-01711-z |
0.715 |
|
| 2022 |
Zhu PP, Hung HF, Batchenkova N, Nixon-Abell J, Henderson J, Zheng P, Renvoisé B, Pang S, Xu CS, Saalfeld S, Funke J, Xie Y, Svara F, Hess HF, Blackstone C. Transverse endoplasmic reticulum expansion in hereditary spastic paraplegia corticospinal axons. Human Molecular Genetics. PMID 35348668 DOI: 10.1093/hmg/ddac072 |
0.615 |
|
| 2021 |
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, Xu CS, Funke J, Korff W, Hess HF, Lippincott-Schwartz J, Saalfeld S, et al. Whole-cell organelle segmentation in volume electron microscopy. Nature. PMID 34616042 DOI: 10.1038/s41586-021-03977-3 |
0.673 |
|
| 2021 |
Buhmann J, Sheridan A, Malin-Mayor C, Schlegel P, Gerhard S, Kazimiers T, Krause R, Nguyen TM, Heinrich L, Lee WA, Wilson R, Saalfeld S, Jefferis GSXE, Bock DD, Turaga SC, ... ... Funke J, et al. Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set. Nature Methods. PMID 34168373 DOI: 10.1038/s41592-021-01183-7 |
0.726 |
|
| 2021 |
Phelps JS, Hildebrand DGC, Graham BJ, Kuan AT, Thomas LA, Nguyen TM, Buhmann J, Azevedo AW, Sustar A, Agrawal S, Liu M, Shanny BL, Funke J, Tuthill JC, Lee WA. Reconstruction of motor control circuits in adult Drosophila using automated transmission electron microscopy. Cell. PMID 33400916 DOI: 10.1016/j.cell.2020.12.013 |
0.416 |
|
| 2020 |
Kuan AT, Phelps JS, Thomas LA, Nguyen TM, Han J, Chen CL, Azevedo AW, Tuthill JC, Funke J, Cloetens P, Pacureanu A, Lee WA. Dense neuronal reconstruction through X-ray holographic nano-tomography. Nature Neuroscience. PMID 32929244 DOI: 10.1038/S41593-020-0704-9 |
0.535 |
|
| 2018 |
Plaza SM, Funke J. Analyzing Image Segmentation for Connectomics. Frontiers in Neural Circuits. 12: 102. PMID 30483069 DOI: 10.3389/Fncir.2018.00102 |
0.365 |
|
| 2018 |
Funke J, Tschopp FD, Grisaitis W, Sheridan A, Singh C, Saalfeld S, Turaga SC. Large Scale Image Segmentation with Structured Loss based Deep Learning for Connectome Reconstruction. Ieee Transactions On Pattern Analysis and Machine Intelligence. PMID 29993708 DOI: 10.1109/Tpami.2018.2835450 |
0.695 |
|
| 2017 |
Funke J, Klein J, Moreno-Noguer F, Cardona A, Cook M. TED: A Tolerant Edit Distance for Segmentation Evaluation. Methods (San Diego, Calif.). PMID 28108198 DOI: 10.1016/J.Ymeth.2016.12.013 |
0.54 |
|
| 2015 |
Kreshuk A, Funke J, Cardona A, Hamprecht FA. Who is talking to whom: Synaptic partner detection in anisotropic volumes of insect brain Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9349: 661-668. DOI: 10.1007/978-3-319-24553-9_81 |
0.522 |
|
| 2014 |
Funke J, Martel JN, Gerhard S, Andres B, CireÅŸan DC, Giusti A, Gambardella LM, Schmidhuber J, Pfister H, Cardona A, Cook M. Candidate sampling for neuron reconstruction from anisotropic electron microscopy volumes. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 17-24. PMID 25333096 |
0.75 |
|
| 2014 |
Funke J, Martel JNP, Gerhard S, Andres B, Cire?an DC, Giusti A, Gambardella LM, Schmidhuber J, Pfister H, Cardona A, Cook M. Candidate sampling for neuron reconstruction from anisotropic electron microscopy volumes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8673: 17-24. DOI: 10.1007/978-3-319-10404-1_3 |
0.735 |
|
| 2012 |
Funke J, Andres B, Hamprecht FA, Cardona A, Cook M. Efficient automatic 3D-reconstruction of branching neurons from em data Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 1004-1011. DOI: 10.1109/CVPR.2012.6247777 |
0.561 |
|
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