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Todd P. Michael - Publications

Affiliations: 
1998-2002 Biological Sciences Dartmouth College, Hanover, NH, United States 
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62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Michael TP. Core circadian clock and light signaling genes brought into genetic linkage across the green lineage. Plant Physiology. PMID 35674369 DOI: 10.1093/plphys/kiac276  0.383
2021 Wickell D, Kuo LY, Yang HP, Dhabalia Ashok A, Irisarri I, Dadras A, de Vries S, de Vries J, Huang YM, Li Z, Barker MS, Hartwick NT, Michael TP, Li FW. Underwater CAM photosynthesis elucidated by Isoetes genome. Nature Communications. 12: 6348. PMID 34732722 DOI: 10.1038/s41467-021-26644-7  0.319
2021 Mansfeld BN, Boyher A, Berry JC, Wilson M, Ou S, Polydore S, Michael TP, Fahlgren N, Bart RS. Large structural variations in the haplotype-resolved African cassava genome. The Plant Journal : For Cell and Molecular Biology. PMID 34661327 DOI: 10.1111/tpj.15543  0.306
2020 Michael TP, Ernst E, Hartwick N, Chu P, Bryant D, Gilbert S, Ortleb S, Baggs EL, Sree KS, Appenroth KJ, Fuchs J, Jupe F, Sandoval JP, Krasileva KV, Borisjuk L, et al. Genome and time-of-day transcriptome of link morphological minimization with gene loss and less growth control. Genome Research. PMID 33361111 DOI: 10.1101/gr.266429.120  0.339
2020 Liu J, Seetharam AS, Chougule K, Ou S, Swentowsky KW, Gent JI, Llaca V, Woodhouse MR, Manchanda N, Presting GG, Kudrna DA, Alabady M, Hirsch CN, Fengler KA, Ware D, ... Michael TP, et al. Gapless assembly of maize chromosomes using long-read technologies. Genome Biology. 21: 121. PMID 32434565 DOI: 10.1186/S13059-020-02029-9  0.305
2020 MacKinnon KJ, Cole BJ, Yu C, Coomey JH, Hartwick NT, Remigereau MS, Duffy T, Michael TP, Kay SA, Hazen SP. Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation. The New Phytologist. PMID 32112414 DOI: 10.1111/Nph.16507  0.483
2020 VanBuren R, Man Wai C, Wang X, Pardo J, Yocca AE, Wang H, Chaluvadi SR, Han G, Bryant D, Edger PP, Messing J, Sorrells ME, Mockler TC, Bennetzen JL, Michael TP. Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff. Nature Communications. 11: 884. PMID 32060277 DOI: 10.1038/S41467-020-14724-Z  0.351
2020 Michael TP, VanBuren R. Building near-complete plant genomes. Current Opinion in Plant Biology. 54: 26-33. PMID 31981929 DOI: 10.1016/J.Pbi.2019.12.009  0.394
2019 Silva SR, Moraes AP, Penha HA, Julião MHM, Domingues DS, Michael TP, Miranda VFO, Varani AM. The Terrestrial Carnivorous Plant Sheds Light on Environmental and Life-Form Genome Plasticity. International Journal of Molecular Sciences. 21. PMID 31861318 DOI: 10.3390/Ijms21010003  0.393
2019 Silva SR, Pinheiro DG, Penha HA, Płachno BJ, Michael TP, Meer EJ, Miranda VFO, Varani AM. Intraspecific Variation within the Species Morphotypes Based on Chloroplast Genomes. International Journal of Molecular Sciences. 20. PMID 31817365 DOI: 10.3390/Ijms20246130  0.371
2019 Wai CM, Weise SE, Ozersky P, Mockler TC, Michael TP, VanBuren R. Time of day and network reprogramming during drought induced CAM photosynthesis in Sedum album. Plos Genetics. 15: e1008209. PMID 31199791 DOI: 10.1371/Journal.Pgen.1008209  0.404
2019 Jupe F, Rivkin AC, Michael TP, Zander M, Motley ST, Sandoval JP, Slotkin RK, Chen H, Castanon R, Nery JR, Ecker JR. The complex architecture and epigenomic impact of plant T-DNA insertions. Plos Genetics. 15: e1007819. PMID 30657772 DOI: 10.1371/Journal.Pgen.1007819  0.302
2018 Mower JP, Ma PF, Grewe F, Taylor A, Michael TP, VanBuren R, Qiu YL. Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat. The New Phytologist. PMID 30556907 DOI: 10.1111/Nph.15650  0.408
2018 Chu P, Wilson GM, Michael TP, Vaiciunas J, Honig J, Lam E. Sequence-guided approach to genotyping plant clones and species using polymorphic NB-ARC-related genes. Plant Molecular Biology. PMID 30191440 DOI: 10.1007/S11103-018-0774-1  0.357
2018 Hoang PNT, Michael TP, Gilbert S, Chu P, Motley TS, Appenroth KJ, Schubert I, Lam E. Generating a high-confidence reference genome map of the Greater Duckweed by integration of cytogenomic, optical mapping and Oxford Nanopore technologies. The Plant Journal : For Cell and Molecular Biology. PMID 30054939 DOI: 10.1111/Tpj.14049  0.306
2018 Michael TP, Jupe F, Bemm F, Motley ST, Sandoval JP, Lanz C, Loudet O, Weigel D, Ecker JR. High contiguity Arabidopsis thaliana genome assembly with a single nanopore flow cell. Nature Communications. 9: 541. PMID 29416032 DOI: 10.1038/S41467-018-03016-2  0.344
2018 VanBuren R, Wai CM, Ou S, Pardo J, Bryant D, Jiang N, Mockler TC, Edger P, Michael TP. Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla. Nature Communications. 9: 13. PMID 29296019 DOI: 10.1038/S41467-017-02546-5  0.426
2018 Silva SR, Michael TP, Meer EJ, Pinheiro DG, Varani AM, Miranda VFO. Comparative genomic analysis of Genlisea (corkscrew plants-Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes. Plos One. 13: e0190321. PMID 29293597 DOI: 10.1371/Journal.Pone.0190321  0.396
2017 VanBuren R, Wai J, Zhang Q, Song X, Edger PP, Bryant D, Michael TP, Mockler TC, Bartels D. Seed desiccation mechanisms co-opted for vegetative desiccation in the resurrection grass Oropetium thomeaum. Plant, Cell & Environment. PMID 28730594 DOI: 10.1111/Pce.13027  0.393
2017 Silva SR, Alvarenga DO, Aranguren Y, Penha HA, Fernandes CC, Pinheiro DG, Oliveira MT, Michael TP, Miranda VFO, Varani AM. The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks. Plos One. 12: e0180484. PMID 28723946 DOI: 10.1371/Journal.Pone.0180484  0.395
2017 Silva SR, Pinheiro DG, Meer EJ, Michael TP, Varani AM, Miranda VFO. The complete chloroplast genome sequence of the leafy bladderwort, Utricularia foliosa L. (Lentibulariaceae) Conservation Genetics Resources. 9: 213-216. DOI: 10.1007/S12686-016-0653-5  0.37
2016 Silva SR, Diaz YC, Penha HA, Pinheiro DG, Fernandes CC, Miranda VF, Michael TP, Varani AM. The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family. Plos One. 11: e0165176. PMID 27764252 DOI: 10.1371/Journal.Pone.0165176  0.402
2016 Michael TP, Bryant D, Gutierrez R, Borisjuk N, Chu P, Zhang H, Xia J, Zhou J, Peng H, El Baidouri M, Ten Hallers B, Hastie AR, Liang T, Acosta K, Gilbert S, et al. Comprehensive Definition of Genome Features in Spirodela polyrhiza by High-Depth Physical Mapping and Short-Read DNA Sequencing Strategies. The Plant Journal : For Cell and Molecular Biology. PMID 27754575 DOI: 10.1111/Tpj.13400  0.391
2016 VanBuren R, Bryant D, Bushakra JM, Vining KJ, Edger PP, Rowley ER, Priest HD, Michael TP, Lyons E, Filichkin SA, Dossett M, Finn CE, Bassil NV, Mockler TC. The genome of black raspberry (Rubus occidentalis). The Plant Journal : For Cell and Molecular Biology. PMID 27228578 DOI: 10.1111/Tpj.13215  0.405
2015 VanBuren R, Bryant D, Edger PP, Tang H, Burgess D, Challabathula D, Spittle K, Hall R, Gu J, Lyons E, Freeling M, Bartels D, Ten Hallers B, Hastie A, Michael TP, et al. Single-molecule sequencing of the desiccation-tolerant grass Oropetium thomaeum. Nature. 527: 508-11. PMID 26560029 DOI: 10.1038/Nature15714  0.372
2015 Michael TP, VanBuren R. Progress, challenges and the future of crop genomes Current Opinion in Plant Biology. 24: 71-81. PMID 25703261 DOI: 10.1016/J.Pbi.2015.02.002  0.381
2014 Fleischmann A, Michael TP, Rivadavia F, Sousa A, Wang W, Temsch EM, Greilhuber J, Müller KF, Heubl G. Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms. Annals of Botany. 114: 1651-63. PMID 25274549 DOI: 10.1093/Aob/Mcu189  0.307
2014 Wang W, Haberer G, Gundlach H, Gläßer C, Nussbaumer T, Luo MC, Lomsadze A, Borodovsky M, Kerstetter RA, Shanklin J, Byrant DW, Mockler TC, Appenroth KJ, Grimwood J, Jenkins J, ... ... Michael TP, et al. The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nature Communications. 5: 3311. PMID 24548928 DOI: 10.1038/Ncomms4311  0.398
2014 Priest HD, Fox SE, Rowley ER, Murray JR, Michael TP, Mockler TC. Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress. Plos One. 9: e87499. PMID 24489928 DOI: 10.1371/Journal.Pone.0087499  0.343
2014 Lam E, Appenroth KJ, Michael T, Mori K, Fakhoorian T. Duckweed in bloom: the 2nd International Conference on Duckweed Research and Applications heralds the return of a plant model for plant biology. Plant Molecular Biology. 84: 737-42. PMID 24398764 DOI: 10.1007/S11103-013-0162-9  0.355
2013 Ibarra-Laclette E, Lyons E, Hernández-Guzmán G, Pérez-Torres CA, Carretero-Paulet L, Chang TH, Lan T, Welch AJ, Juárez MJ, Simpson J, Fernández-Cortés A, Arteaga-Vázquez M, Góngora-Castillo E, Acevedo-Hernández G, Schuster SC, ... ... Michael TP, et al. Architecture and evolution of a minute plant genome. Nature. 498: 94-8. PMID 23665961 DOI: 10.1038/Nature12132  0.401
2013 Luo C, Sidote DJ, Zhang Y, Kerstetter RA, Michael TP, Lam E. Integrative analysis of chromatin states in Arabidopsis identified potential regulatory mechanisms for natural antisense transcript production. The Plant Journal : For Cell and Molecular Biology. 73: 77-90. PMID 22962860 DOI: 10.1111/Tpj.12017  0.354
2013 Michael TP, Jackson S. The first 50 plant genomes Plant Genome. 6. DOI: 10.3835/Plantgenome2013.03.0001In  0.369
2012 Michael TP, Alba R. The tomato genome fleshed out Nature Biotechnology. 30: 765-767. PMID 22871715 DOI: 10.1038/Nbt.2319  0.326
2012 Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, ... ... Michael T, et al. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nature Biotechnology. 30: 83-9. PMID 22057054 DOI: 10.1038/Nbt.2022  0.361
2011 Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC. Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. Plos One. 6: e16907. PMID 21694767 DOI: 10.1371/Journal.Pone.0016907  0.537
2011 Lutz KA, Wang W, Zdepski A, Michael TP. Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing. Bmc Biotechnology. 11: 54. PMID 21599914 DOI: 10.1186/1472-6750-11-54  0.312
2011 Banks JA, Nishiyama T, Hasebe M, Bowman JL, Gribskov M, dePamphilis C, Albert VA, Aono N, Aoyama T, Ambrose BA, Ashton NW, Axtell MJ, Barker E, Barker MS, Bennetzen JL, ... ... Michael TP, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science (New York, N.Y.). 332: 960-3. PMID 21551031 DOI: 10.1126/Science.1203810  0.41
2011 Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, ... ... Michael TP, et al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 43: 109-16. PMID 21186353 DOI: 10.1038/Ng.740  0.395
2010 Hong S, Song HR, Lutz K, Kerstetter RA, Michael TP, McClung CR. Type II protein arginine methyltransferase 5 (PRMT5) is required for circadian period determination in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 107: 21211-6. PMID 21097700 DOI: 10.1073/Pnas.1011987107  0.735
2010 Dayarian A, Michael TP, Sengupta AM. SOPRA: Scaffolding algorithm for paired reads via statistical optimization. Bmc Bioinformatics. 11: 345. PMID 20576136 DOI: 10.1186/1471-2105-11-345  0.301
2010 Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, ... ... Michael T, et al. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 465: 627-31. PMID 20336072 DOI: 10.1038/Nature08800  0.339
2010 Vogel JP, Garvin DF, Mockler TC, Schmutz J, Rokhsar D, Bevan MW, Barry K, Lucas S, Harmon-Smith M, Lail K, Tice H, Grimwood J, McKenzie N, Huo N, Gu YQ, ... ... Michael TP, et al. Genome sequencing and analysis of the model grass Brachypodium distachyon Nature. 463: 763-768. PMID 20148030 DOI: 10.1038/Nature08747  0.343
2010 Albert VA, Jobson RW, Michael TP, Taylor DJ. The carnivorous bladderwort (Utricularia, Lentibulariaceae): A system inflates Journal of Experimental Botany. 61: 5-9. PMID 20007200 DOI: 10.1093/Jxb/Erp349  0.351
2009 Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 183: 723-32, 1SI-7SI. PMID 19652183 DOI: 10.1534/Genetics.109.104984  0.406
2009 Pan Y, Michael TP, Hudson ME, Kay SA, Chory J, Schuler MA. Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. Plant Physiology. 150: 858-78. PMID 19386812 DOI: 10.1104/Pp.108.130757  0.415
2008 Zdepski A, Wang W, Priest HD, Ali F, Alam M, Mockler TC, Michael TP. Conserved Daily Transcriptional Programs in Carica papaya. Tropical Plant Biology. 1: 236-245. PMID 20671772 DOI: 10.1007/S12042-008-9020-3  0.526
2008 Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 105: 17193-8. PMID 18971337 DOI: 10.1073/Pnas.0807264105  0.422
2008 Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J. A morning-specific phytohormone gene expression program underlying rhythmic plant growth. Plos Biology. 6: e225. PMID 18798691 DOI: 10.1371/Journal.Pbio.0060225  0.47
2008 Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Michael TP, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856  0.374
2008 Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. Plos Genetics. 4: e14. PMID 18248097 DOI: 10.1371/Journal.Pgen.0040014  0.485
2007 Mockler TC, Michael TP, Priest HD, Shen R, Sullivan CM, Givan SA, McEntee C, Kay SA, Chory J. The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harbor Symposia On Quantitative Biology. 72: 353-63. PMID 18419293 DOI: 10.1101/Sqb.2007.72.006  0.358
2007 Michael TP, Park S, Kim TS, Booth J, Byer A, Sun Q, Chory J, Lee K. Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. Plos One. 2: e795. PMID 17726525 DOI: 10.1371/Journal.Pone.0000795  0.462
2007 Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 104: 12057-62. PMID 17626786 DOI: 10.1073/Pnas.0705323104  0.37
2006 Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nature Genetics. 38: 711-5. PMID 16732287 DOI: 10.1038/Ng1818  0.405
2004 Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. Regulation of flowering time in Arabidopsis by K homology domain proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 12759-64. PMID 15310842 DOI: 10.1073/Pnas.0404552101  0.378
2003 Michael TP, Salomé PA, Yu HJ, Spencer TR, Sharp EL, McPeek MA, Alonso JM, Ecker JR, McClung CR. Enhanced fitness conferred by naturally occurring variation in the circadian clock. Science (New York, N.Y.). 302: 1049-53. PMID 14605371 DOI: 10.1126/Science.1082971  0.751
2003 Michael TP, McClung CR. Enhancer trapping reveals widespread circadian clock transcriptional control in Arabidopsis. Plant Physiology. 132: 629-39. PMID 12805593 DOI: 10.1104/Pp.021006  0.675
2003 Michael TP, Salome PA, McClung CR. Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proceedings of the National Academy of Sciences of the United States of America. 100: 6878-83. PMID 12736379 DOI: 10.1073/Pnas.1131995100  0.749
2002 McClung CR, Salomé PA, Michael TP. The Arabidopsis circadian system. The Arabidopsis Book / American Society of Plant Biologists. 1: e0044. PMID 22303209 DOI: 10.1199/Tab.0044  0.759
2002 Michael TP, McClung CR. Phase-specific circadian clock regulatory elements in Arabidopsis. Plant Physiology. 130: 627-38. PMID 12376630 DOI: 10.1104/Pp.004929  0.66
2002 Salomé PA, Michael TP, Kearns EV, Fett-Neto AG, Sharrock RA, McClung CR. The out of phase 1 mutant defines a role for PHYB in circadian phase control in Arabidopsis. Plant Physiology. 129: 1674-85. PMID 12177480 DOI: 10.1104/Pp.003418  0.652
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