Uttiya Basu, PhD - Publications

Columbia University, New York, NY 

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Laffleur B, Lim J, Zhang W, Chen Y, Pefanis E, Bizarro J, Batista CR, Wu L, Economides AN, Wang J, Basu U. Noncoding RNA processing by DIS3 regulates chromosomal architecture and somatic hypermutation in B cells. Nature Genetics. PMID 33526923 DOI: 10.1038/s41588-020-00772-0  0.4
2021 Kaja A, Adhikari A, Karmakar S, Zhang W, Rothschild G, Basu U, Batra SK, Davie JK, Bhaumik SR. Proteasomal regulation of mammalian SPT16 in controlling transcription. Molecular and Cellular Biology. PMID 33526453 DOI: 10.1128/MCB.00452-20  0.36
2021 Sun J, Basu U. Purification of Murine IL-10 B Cells for Analyses of Biological Functions and Transcriptomics. Methods in Molecular Biology (Clifton, N.J.). 2270: 307-321. PMID 33479906 DOI: 10.1007/978-1-0716-1237-8_17  0.4
2020 Kane JR, Zhao J, Tsujiuchi T, Laffleur B, Arrieta VA, Mahajan A, Rao G, Mela A, Dmello C, Chen L, Zhang DY, Gonzalez-Buendia E, Lee-Chang C, Xiao T, Rothschild G, ... Basu U, et al. CD8 T-cell-mediated immunoediting influences genomic evolution and immune evasion in murine gliomas. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 32430477 DOI: 10.1158/1078-0432.Ccr-19-3104  0.4
2020 Kazadi D, Lim J, Rothschild G, Grinstein V, Laffleur B, Becherel O, Lavin MJ, Basu U. Effects of senataxin and RNA exosome on B-cell chromosomal integrity. Heliyon. 6: e03442. PMID 32195383 DOI: 10.1016/J.Heliyon.2020.E03442  0.4
2020 Rothschild G, Zhang W, Lim J, Giri PK, Laffleur B, Chen Y, Fang M, Chen Y, Nair L, Liu ZP, Deng H, Hammarström L, Wang J, Basu U. Noncoding RNA transcription alters chromosomal topology to promote isotype-specific class switch recombination. Science Immunology. 5. PMID 32034089 DOI: 10.1126/Sciimmunol.Aay5864  0.92
2018 Zou F, Wang X, Han X, Rothschild G, Zheng SG, Basu U, Sun J. Expression and Function of Tetraspanins and Their Interacting Partners in B Cells. Frontiers in Immunology. 9: 1606. PMID 30072987 DOI: 10.3389/Fimmu.2018.01606  0.4
2017 Skamagki M, Zhang C, Ross CA, Ananthanarayanan A, Liu Z, Mu Q, Basu U, Wang J, Zhao R, Li H, Kim K. RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells. Stem Cell Reports. 9: 1053-1061. PMID 29020613 DOI: 10.1016/J.Stemcr.2017.08.024  0.4
2017 Lim J, Giri PK, Kazadi D, Laffleur B, Zhang W, Grinstein V, Pefanis E, Brown LM, Ladewig E, Martin O, Chen Y, Rabadan R, Boyer F, Rothschild G, Cogné M, ... ... Basu U, et al. Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry. Cell. 169: 523-537.e15. PMID 28431250 DOI: 10.1016/J.Cell.2017.03.043  0.92
2017 Rothschild G, Basu U. Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability. Trends in Genetics : Tig. PMID 28087167 DOI: 10.1016/J.Tig.2016.12.002  0.36
2016 Casellas R, Basu U, Yewdell WT, Chaudhuri J, Robbiani DF, Di Noia JM. Mutations, kataegis and translocations in B cells: understanding AID promiscuous activity. Nature Reviews. Immunology. PMID 26898111 DOI: 10.1038/Nri.2016.2  0.92
2015 Sun J, Wang J, Pefanis E, Chao J, Rothschild G, Tachibana I, Chen JK, Ivanov II, Rabadan R, Takeda Y, Basu U. Transcriptomics Identify CD9 as a Marker of Murine IL-10-Competent Regulatory B Cells. Cell Reports. PMID 26527007 DOI: 10.1016/J.Celrep.2015.09.070  0.92
2015 Rothschild G, Nikolai von Krusenstiern A, Basu U. Malaria-Induced B Cell Genomic Instability. Cell. 162: 697-8. PMID 26276622 DOI: 10.1016/J.Cell.2015.07.051  0.92
2015 Pefanis E, Basu U. RNA Exosome Regulates AID DNA Mutator Activity in the B Cell Genome. Advances in Immunology. 127: 257-308. PMID 26073986 DOI: 10.1016/Bs.Ai.2015.04.002  0.92
2015 Pefanis E, Wang J, Rothschild G, Lim J, Kazadi D, Sun J, Federation A, Chao J, Elliott O, Liu ZP, Economides AN, Bradner JE, Rabadan R, Basu U. RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity. Cell. 161: 774-89. PMID 25957685 DOI: 10.1016/J.Cell.2015.04.034  0.92
2014 Pefanis E, Wang J, Rothschild G, Lim J, Chao J, Rabadan R, Economides AN, Basu U. Noncoding RNA transcription targets AID to divergently transcribed loci in B cells. Nature. 514: 389-93. PMID 25119026 DOI: 10.1038/Nature13580  0.92
2014 Chao J, Rothschild G, Basu U. Ubiquitination events that regulate recombination of immunoglobulin Loci gene segments. Frontiers in Immunology. 5: 100. PMID 24653725 DOI: 10.3389/Fimmu.2014.00100  0.92
2013 Sun J, Keim CD, Wang J, Kazadi D, Oliver PM, Rabadan R, Basu U. E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells. Genes & Development. 27: 1821-33. PMID 23964096 DOI: 10.1101/Gad.210211.112  0.92
2013 Sun J, Rothschild G, Pefanis E, Basu U. Transcriptional stalling in B-lymphocytes: a mechanism for antibody diversification and maintenance of genomic integrity. Transcription. 4: 127-35. PMID 23584095 DOI: 10.4161/trns.24556  0.92
2013 Keim C, Kazadi D, Rothschild G, Basu U. Regulation of AID, the B-cell genome mutator. Genes & Development. 27: 1-17. PMID 23307864 DOI: 10.1101/Gad.200014.112  0.92
2011 Ise W, Kohyama M, Schraml BU, Zhang T, Schwer B, Basu U, Alt FW, Tang J, Oltz EM, Murphy TL, Murphy KM. The transcription factor BATF controls the global regulators of class-switch recombination in both B cells and T cells. Nature Immunology. 12: 536-43. PMID 21572431 DOI: 10.1038/Ni.2037  0.92
2011 Keim C, Grinstein V, Basu U. Recombinant retroviral production and infection of B cells. Journal of Visualized Experiments : Jove. PMID 21372789 DOI: 10.3791/2371  0.92
2011 Basu U, Meng FL, Keim C, Grinstein V, Pefanis E, Eccleston J, Zhang T, Myers D, Wasserman CR, Wesemann DR, Januszyk K, Gregory RI, Deng H, Lima CD, Alt FW. The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates. Cell. 144: 353-63. PMID 21255825 DOI: 10.1016/J.Cell.2011.01.001  0.92
2009 Basu U, Franklin A, Schwer B, Cheng HL, Chaudhuri J, Alt FW. Regulation of activation-induced cytidine deaminase DNA deamination activity in B-cells by Ser38 phosphorylation. Biochemical Society Transactions. 37: 561-8. PMID 19442251 DOI: 10.1042/Bst0370561  0.92
2009 Cheng HL, Vuong BQ, Basu U, Franklin A, Schwer B, Astarita J, Phan RT, Datta A, Manis J, Alt FW, Chaudhuri J. Integrity of the AID serine-38 phosphorylation site is critical for class switch recombination and somatic hypermutation in mice. Proceedings of the National Academy of Sciences of the United States of America. 106: 2717-22. PMID 19196992 DOI: 10.1073/Pnas.0812304106  0.92
2009 Basu U, Franklin A, Alt FW. Post-translational regulation of activation-induced cytidine deaminase. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 667-73. PMID 19010772 DOI: 10.1098/Rstb.2008.0194  0.92
2008 Basu U, Wang Y, Alt FW. Evolution of phosphorylation-dependent regulation of activation-induced cytidine deaminase. Molecular Cell. 32: 285-91. PMID 18951095 DOI: 10.1016/J.Molcel.2008.08.019  0.92
2008 Ray P, Basu U, Ray A, Majumdar R, Deng H, Maitra U. The Saccharomyces cerevisiae 60 S ribosome biogenesis factor Tif6p is regulated by Hrr25p-mediated phosphorylation. The Journal of Biological Chemistry. 283: 9681-91. PMID 18256024 DOI: 10.1074/Jbc.M710294200  0.92
2007 Chaudhuri J, Basu U, Zarrin A, Yan C, Franco S, Perlot T, Vuong B, Wang J, Phan RT, Datta A, Manis J, Alt FW. Evolution of the immunoglobulin heavy chain class switch recombination mechanism. Advances in Immunology. 94: 157-214. PMID 17560275 DOI: 10.1016/S0065-2776(06)94006-1  0.92
2007 Basu U, Chaudhuri J, Phan RT, Datta A, Alt FW. Regulation of activation induced deaminase via phosphorylation. Advances in Experimental Medicine and Biology. 596: 129-37. PMID 17338181 DOI: 10.1007/0-387-46530-8_11  0.92
2006 Longerich S, Basu U, Alt F, Storb U. AID in somatic hypermutation and class switch recombination. Current Opinion in Immunology. 18: 164-74. PMID 16464563 DOI: 10.1016/J.Coi.2006.01.008  0.92
2006 Longerich S, Basu U, Alt F, Storb U. AID in somatic hypermutation and class switch recombination [Current Opinion in Immunology 2006, 18:164-174] (DOI:10.1016/j.coi.2006.01.008) Current Opinion in Immunology. 18: 769. DOI: 10.1016/J.Coi.2006.09.017  0.92
2005 Basu U, Chaudhuri J, Alpert C, Dutt S, Ranganath S, Li G, Schrum JP, Manis JP, Alt FW. The AID antibody diversification enzyme is regulated by protein kinase A phosphorylation. Nature. 438: 508-11. PMID 16251902 DOI: 10.1038/Nature04255  0.92
2003 Basu U, Si K, Deng H, Maitra U. Phosphorylation of mammalian eukaryotic translation initiation factor 6 and its Saccharomyces cerevisiae homologue Tif6p: evidence that phosphorylation of Tif6p regulates its nucleocytoplasmic distribution and is required for yeast cell growth. Molecular and Cellular Biology. 23: 6187-99. PMID 12917340 DOI: 10.1128/Mcb.23.17.6187-6199.2003  0.92
2001 Basu U, Si K, Warner JR, Maitra U. The Saccharomyces cerevisiae TIF6 gene encoding translation initiation factor 6 is required for 60S ribosomal subunit biogenesis. Molecular and Cellular Biology. 21: 1453-62. PMID 11238882 DOI: 10.1128/Mcb.21.5.1453-1462.2001  0.92
1971 Das PC, Patra BB, Chaudhuri SB, Basu UP. Synthesis of some 1-piperazinecarboxalic acid ethyl ester derivatives as possible antifilarial and antihypertensive agents. Journal of Medicinal Chemistry. 14: 890-1. PMID 5140022  0.84
1968 Bhaduri B, Ghose CR, Bose AN, Moza BK, Basu UP. Antifertility activity of some medicinal plants. Indian Journal of Experimental Biology. 6: 252-3. PMID 5720685  0.84
1968 Dutta T, Basu UP. Crude extract of Centella asiatica and products derived from its glycosides as oral antifertility agents. Indian Journal of Experimental Biology. 6: 181-2. PMID 5718539  0.84
1968 Dutta S, Das BP, Paul BK, Acharyya AK, Basu UP. 3-Substituted amino-4,5-disubstituted 1,2,4-4H-triazole and aldehyde from 1-acylsemicarbazide Journal of Organic Chemistry. 33: 858-860.  0.84
1967 Basu UP, Bhattacharya B. Hydrogenolysis by hydrogen transfer. Role of palladium-charcoal on halogenated benzo-pyridine system Journal of Organic Chemistry. 32: 4108-4111.  0.84
1966 Bose AN, Ghosh SN, Basu UP. Hypoglycaemic activity of some substituted thiazole and thiadiazole biguanides. Indian Journal of Experimental Biology. 4: 190-1. PMID 5966966  0.84
1966 Esh GC, Bhattacharya SP, Basu UP. Interdependence of vitamins in metabolism. I. Influence of vitamin C during protein regeneration in guinea pigs. Metabolism: Clinical and Experimental. 15: 1039-45. PMID 5922365  0.84
1965 Basu UP, Dutta S. Abnormal products during isolation of isonicotinic acid hydrazide. The Journal of Organic Chemistry. 30: 3562-4. PMID 5846150  0.84
1962 BASU UP. Thalidomide raises a problem in drug research. Journal of the Indian Medical Association. 39: 639-42. PMID 13966788  0.84
1960 ESH GC, DE TS, BASU UP. Nutritive value of the proteins of Bengal gram of high and low protein content. The British Journal of Nutrition. 14: 425-31. PMID 13697356 DOI: 10.1079/BJN19600057  0.84
1959 Esh GC, DE TS, Basu UP. Influence of Genetic Strain and Environment on the Protein Content of Pulses. Science (New York, N.Y.). 129: 148-9. PMID 17745326 DOI: 10.1126/science.129.3342.148  0.84
1956 BASU UP. On the role of isoniazid in the treatment of tuberculosis. Journal of the Indian Medical Association. 27: 430-1. PMID 13398639  0.84
1954 RAY NK, BOSE AN, BASU UP. Studies on the pharmacology and chemotherapy of a dihydrotriazine derivative. Journal of the Indian Medical Association. 24: 169-73. PMID 13221824  0.56
1951 BASU UP, GANGULY SK, BOSE AN. Adrenaline for parenteral use. Indian Medical Journal. 45: 112-3. PMID 14880259  0.84
1951 BASU UP, BOSE AN. Sulphabenzamide a drug for bacillary dysentery. Journal of the Indian Medical Association. 20: 312-4. PMID 14850728  0.56
1951 BASU UP. Thiosemicarbazones--new therapeutic agents in tuberculosis. The Antiseptic. 48: 350-2. PMID 14847580  0.84
1951 BASU UP, GUHA PK. Protein hydrolysate for therapy. The Antiseptic. 48: 268-73. PMID 14830152  0.84
1951 BASU UP, BOSE AN. A new sulfa drug; phthalyl sulfacetamide; for clinical use. The Antiseptic. 48: 40-1. PMID 14820042  0.84
1950 BASU UP. Bengal Immunity Research Institute, Calcutta. Indian Medical Journal. 44: 120-1. PMID 15428072  0.84
1950 CHAKRAVORTY A, BASU UP. On the economic use of quinine. Calcutta Medical Journal. 47: 246-8. PMID 14778001  0.84
1950 BASU UP. A few practical hints for treating cases of essential hypertension. Calcutta Medical Journal. 47: 243-6. PMID 14778000  0.84
1949 BASU UP, BHATTACHARYA S. A solvent of vitamin A. The Pharmaceutical Journal. 109: 196. PMID 18149242  0.84
1948 BASU UP, SEN GUPTA SK. On the fortification of edible fat with vitamin A. Journal of the American Chemical Society. 70: 413. PMID 18918841  0.84
1947 BASU UP, MUKHERJEE S, BANERJEE RP. Influence of bile salts on the absorption of quinine. Journal of the American Pharmaceutical Association. American Pharmaceutical Association. 36: 266-8. PMID 20264182  0.84
1947 BASU UP. A note on sulphabenzamide. The Pharmaceutical Journal. 105: 48. PMID 20256503  0.84
1946 BASU UP, SEN SN, BOSE AN. Standards for protein hydrolysate (injection). The Pharmaceutical Journal. 103: 409. PMID 20281347  0.84
1946 BASU UP, SEN GUPTA PN. On the anti-bacterial activity of Allium sativum. The Antiseptic. 43: 631. PMID 20273952  0.84
1946 BASU UP, GUPTA P. Preparation of desoxycholic acid from Indian ox bile. Journal of Scientific and Industrial Research (New Delhi, India : 1942). 5: 83, Suppl. PMID 20245278  0.84
1945 DHAR SP, BASU UP. On dicoumarin-synthetic anti-coagulant. Current Science. 14: 264. PMID 21007605  0.84
1945 BOSE AN, SEN GUPTA PN, BASU UP. Sulpha drugs in bacillary dysentery. Indian Medical Gazette. 80: 385-8. PMID 21003711  0.84
1945 BASU UP. Treatment of cerebrospinal fever. Modern Treatment Yearbook. 80-5. PMID 20281435  0.84
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