Padraig Gleeson - Publications

Affiliations: 
University College London, London, United Kingdom 
Area:
Computational neuroscience
Website:
http://www.neuroconstruct.org

20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, et al. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Neuron. PMID 31201122 DOI: 10.1016/j.neuron.2019.05.019  0.8
2018 Neal ML, König M, Nickerson D, Misirli G, Kalbasi R, Dräger A, Atalag K, Chelliah V, Cooling MT, Cook DL, Crook S, de Alba M, Friedman SH, Garny A, Gennari JH, ... Gleeson P, et al. Harmonizing semantic annotations for computational models in biology. Briefings in Bioinformatics. PMID 30462164 DOI: 10.1093/bib/bby087  0.36
2018 Cantarelli M, Marin B, Quintana A, Earnshaw M, Court R, Gleeson P, Dura-Bernal S, Silver RA, Idili G. Geppetto: a reusable modular open platform for exploring neuroscience data and models. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 30201843 DOI: 10.1098/rstb.2017.0380  0.8
2017 Gleeson P, Davison AP, Silver RA, Ascoli GA. A Commitment to Open Source in Neuroscience. Neuron. 96: 964-965. PMID 29216458 DOI: 10.1016/j.neuron.2017.10.013  0.8
2017 Eglen SJ, Marwick B, Halchenko YO, Hanke M, Sufi S, Gleeson P, Silver RA, Davison AP, Lanyon L, Abrams M, Wachtler T, Willshaw DJ, Pouzat C, Poline JB. Toward standard practices for sharing computer code and programs in neuroscience. Nature Neuroscience. 20: 770-773. PMID 28542156 DOI: 10.1038/nn.4550  0.8
2015 Ramaswamy S, Courcol JD, Abdellah M, Adaszewski SR, Antille N, Arsever S, Atenekeng G, Bilgili A, Brukau Y, Chalimourda A, Chindemi G, Delalondre F, Dumusc R, Eilemann S, Gevaert ME, ... Gleeson P, et al. The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in Neural Circuits. 9: 44. PMID 26500503 DOI: 10.3389/fncir.2015.00044  0.8
2015 Waltemath D, Bergmann FT, Chaouiya C, Czauderna T, Gleeson P, Goble C, Golebiewski M, Hucka M, Juty N, Krebs O, Novère N, Mi H, Moraru II, Myers CJ, Nickerson D, et al. Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE) Standards in Genomic Sciences. DOI: 10.4056/sigs.5279417  0.8
2014 Szigeti B, Gleeson P, Vella M, Khayrulin S, Palyanov A, Hokanson J, Currie M, Cantarelli M, Idili G, Larson S. OpenWorm: an open-science approach to modeling Caenorhabditis elegans. Frontiers in Computational Neuroscience. 8: 137. PMID 25404913 DOI: 10.3389/fncom.2014.00137  0.8
2014 Cannon RC, Gleeson P, Crook S, Ganapathy G, Marin B, Piasini E, Silver RA. LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2. Frontiers in Neuroinformatics. 8: 79. PMID 25309419 DOI: 10.3389/fninf.2014.00079  0.8
2014 Vella M, Cannon RC, Crook S, Davison AP, Ganapathy G, Robinson HP, Silver RA, Gleeson P. libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience. Frontiers in Neuroinformatics. 8: 38. PMID 24795618 DOI: 10.3389/fninf.2014.00038  0.8
2014 Farinella M, Ruedt DT, Gleeson P, Lanore F, Silver RA. Glutamate-bound NMDARs arising from in vivo-like network activity extend spatio-temporal integration in a L5 cortical pyramidal cell model. Plos Computational Biology. 10: e1003590. PMID 24763087 DOI: 10.1371/journal.pcbi.1003590  0.8
2012 Howarth C, Gleeson P, Attwell D. Updated energy budgets for neural computation in the neocortex and cerebellum. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 32: 1222-32. PMID 22434069 DOI: 10.1038/jcbfm.2012.35  0.8
2012 Gleeson P, Steuber V, Silver RA, Crook S. NeuroML Computational Systems Neurobiology. 489-517. DOI: 10.1007/978-94-007-3858-4_16  0.8
2010 Vervaeke K, Lorincz A, Gleeson P, Farinella M, Nusser Z, Silver RA. Rapid desynchronization of an electrically coupled interneuron network with sparse excitatory synaptic input. Neuron. 67: 435-51. PMID 20696381 DOI: 10.1016/j.neuron.2010.06.028  0.8
2010 Gleeson P, Crook S, Cannon RC, Hines ML, Billings GO, Farinella M, Morse TM, Davison AP, Ray S, Bhalla US, Barnes SR, Dimitrova YD, Silver RA. NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail. Plos Computational Biology. 6: e1000815. PMID 20585541 DOI: 10.1371/journal.pcbi.1000815  0.8
2008 Gleeson P, Steuber V, Silver RA. Using Neuroconstruct to Develop and Modify Biologically Detailed 3d Neuronal Network Models in Health and Disease Computational Neuroscience in Epilepsy. 48-70. DOI: 10.1016/B978-012373649-9.50008-9  0.8
2008 Günay C, Smolinski TG, Lytton WW, Morse TM, Gleeson P, Crook S, Steuber V, Silver A, Voicu H, Andrews P, Bokil H, Maniar H, Loader C, Mehta S, Kleinfeld D, et al. Computational intelligence in electrophysiology: Trends and open problems Studies in Computational Intelligence. 122: 325-359. DOI: 10.1007/978-3-540-78534-7_14  0.8
2007 Cannon RC, Gewaltig MO, Gleeson P, Bhalla US, Cornelis H, Hines ML, Howell FW, Muller E, Stiles JR, Wils S, De Schutter E. Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics. 5: 127-38. PMID 17873374 DOI: 10.1007/s12021-007-0004-5  0.8
2007 Crook S, Gleeson P, Howell F, Svitak J, Silver RA. MorphML: level 1 of the NeuroML standards for neuronal morphology data and model specification. Neuroinformatics. 5: 96-104. PMID 17873371 DOI: 10.1007/s12021-007-0003-6  0.8
2007 Gleeson P, Steuber V, Silver RA. neuroConstruct: a tool for modeling networks of neurons in 3D space. Neuron. 54: 219-35. PMID 17442244 DOI: 10.1016/j.neuron.2007.03.025  0.8
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