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Martin Ryberg - Publications

Affiliations: 
Systematic Biology Uppsala University, Uppsala, Uppsala län, Sweden 
Area:
systematic biology
Website:
https://katalog.uu.se/profile/?id=N12-1447
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Aïgnon HL, Fan YG, De Kesel A, Bahram M, Ryberg M, Yorou NS. A new species of Inosperma, and first record of I. afromelliolens (Inocybaceae, Fungi) from West Africa. Plos One. 18: e0290894. PMID 37851619 DOI: 10.1371/journal.pone.0290894  0.377
2023 Nilsson RH, Ryberg M, Wurzbacher C, Tedersoo L, Anslan S, Põlme S, Spirin V, Mikryukov V, Svantesson S, Hartmann M, Lennartsdotter C, Belford P, Khomich M, Retter A, Corcoll N, et al. How, not if, is the question mycologists should be asking about DNA-based typification. Mycokeys. 96: 143-157. PMID 37214179 DOI: 10.3897/mycokeys.96.102669  0.389
2022 Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH. The curse of the uncultured fungus. Mycokeys. 86: 177-194. PMID 35153529 DOI: 10.3897/mycokeys.86.76053  0.425
2021 Meidl P, Furneaux B, Tchan KI, Kluting K, Ryberg M, Guissou ML, Soro B, Traoré A, Konomou G, Yorou NS, Rosling A. Soil fungal communities of ectomycorrhizal dominated woodlands across West Africa. Mycokeys. 81: 45-68. PMID 34475800 DOI: 10.3897/mycokeys.81.66249  0.749
2021 Furneaux B, Bahram M, Rosling A, Yorou NS, Ryberg M. Long- and short-read metabarcoding technologies reveal similar spatiotemporal structures in fungal communities. Molecular Ecology Resources. PMID 33811446 DOI: 10.1111/1755-0998.13387  0.749
2021 Sulistyo BP, Larsson KH, Haelewaters D, Ryberg M. Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov. Fungal Biology. 125: 239-255. PMID 33622540 DOI: 10.1016/j.funbio.2020.11.007  0.322
2021 Aïgnon HL, Jabeen S, Naseer A, Yorou NS, Ryberg M. Three new species of (Agaricales, Inocybaceae) from Tropical Africa. Mycokeys. 77: 97-116. PMID 33551659 DOI: 10.3897/mycokeys.77.60084  0.357
2020 Kalsoom Khan F, Kluting K, Tångrot J, Urbina H, Ammunet T, Eshghi Sahraei S, Rydén M, Ryberg M, Rosling A. Naming the untouchable - environmental sequences and niche partitioning as taxonomical evidence in fungi. Ima Fungus. 11: 23. PMID 33292867 DOI: 10.1186/s43008-020-00045-9  0.536
2020 Hiltunen M, Ryberg M, Johannesson H. ARBitR: An overlap-aware genome assembly scaffolder for linked reads. Bioinformatics (Oxford, England). PMID 33216122 DOI: 10.1093/bioinformatics/btaa975  0.318
2020 Durkin L, Jansson T, Sanchez M, Khomich M, Ryberg M, Kristiansson E, Nilsson RH. When mycologists describe new species, not all relevant information is provided (clearly enough). Mycokeys. 72: 109-128. PMID 32982558 DOI: 10.3897/mycokeys.72.56691  0.31
2020 Ge ZW, Wu JY, Hao YJ, Zhang Q, An YF, Ryberg M. The genus (Catathelasmataceae, Basidiomycota) in China. Mycokeys. 62: 123-138. PMID 32076385 DOI: 10.3897/mycokeys.62.36633  0.336
2018 Bahram M, Hildebrand F, Forslund SK, Anderson JL, Soudzilovskaia NA, Bodegom PM, Bengtsson-Palme J, Anslan S, Coelho LP, Harend H, Huerta-Cepas J, Medema MH, Maltz MR, Mundra S, Olsson PA, ... ... Ryberg M, et al. Structure and function of the global topsoil microbiome. Nature. PMID 30069051 DOI: 10.1038/S41586-018-0386-6  0.331
2018 Ryberg M, Nilsson RH. New light on names and naming of dark taxa. Mycokeys. 31-39. PMID 29681731 DOI: 10.3897/mycokeys.30.24376  0.384
2018 Pent M, Hiltunen M, Põldmaa K, Furneaux B, Hildebrand F, Johannesson H, Ryberg M, Bahram M. Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies. Environmental Microbiology. PMID 29441658 DOI: 10.1111/1462-2920.14069  0.707
2018 Vowles T, Lindwall F, Ekblad A, Bahram M, Furneaux BR, Ryberg M, Björk RG. Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone. Ecology and Evolution. 8: 1019-1030. PMID 29375775 DOI: 10.1002/Ece3.3657  0.709
2018 Bahram M, Vanderpool D, Pent M, Hiltunen M, Ryberg M. The genome and microbiome of a dikaryotic fungus (Inocybe terrigena, Inocybaceae) revealed by metagenomics. Environmental Microbiology Reports. 10: 155-166. PMID 29327481 DOI: 10.1111/1758-2229.12612  0.334
2016 Abarenkov K, Adams RI, Laszlo I, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, ... ... Ryberg M, et al. Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden) Mycokeys. 16: 1-15. DOI: 10.3897/MYCOKEYS.16.10000  0.3
2016 Sheedy EM, Ryberg M, Lebel T, May TW, Bougher NL, Matheny PB. Dating the emergence of truffle-like fungi in Australia, by using an augmented meta-analysis Australian Systematic Botany. 29: 284. DOI: 10.1071/Sb16025  0.353
2015 Looney BP, Ryberg M, Hampe F, Sánchez-García M, Matheny PB. Into and out of the tropics: global diversification patterns in a hyper-diverse clade of ectomycorrhizal fungi. Molecular Ecology. PMID 26642189 DOI: 10.1111/Mec.13506  0.338
2015 Nilsson RH, Tedersoo L, Ryberg M, Kristiansson E, Hartmann M, Unterseher M, Porter TM, Bengtsson-Palme J, Walker DM, de Sousa F, Gamper HA, Larsson E, Larsson KH, Kõljalg U, Edgar RC, et al. A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts. Microbes and Environments / Jsme. 30: 145-50. PMID 25786896 DOI: 10.1264/jsme2.ME14121  0.743
2014 Tedersoo L, Bahram M, Ryberg M, Otsing E, Kõljalg U, Abarenkov K. Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses. Molecular Ecology. 23: 4168-83. PMID 24981058 DOI: 10.1111/mec.12849  0.391
2014 Nilsson RH, Hyde KD, Pawłowska J, Ryberg M, Tedersoo L, Aas AB, Alias SA, Alves A, Anderson CL, Antonelli A, Arnold AE, Bahnmann B, Bahram M, Bengtsson-Palme J, Berlin A, et al. Improving ITS sequence data for identification of plant pathogenic fungi Fungal Diversity. 67: 11-19. DOI: 10.1007/S13225-014-0291-8  0.441
2013 Bengtsson-Palme J, Ryberg M, Hartmann M, Branco S, Wang Z, Godhe A, De Wit P, Sánchez-García M, Ebersberger I, de Sousa F, Amend A, Jumpponen A, Unterseher M, Kristiansson E, Abarenkov K, et al. Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data Methods in Ecology and Evolution. 4: 914-919. DOI: 10.1111/2041-210X.12073  0.44
2012 Tedersoo L, Bahram M, Toots M, Diédhiou AG, Henkel TW, Kjøller R, Morris MH, Nara K, Nouhra E, Peay KG, Põlme S, Ryberg M, Smith ME, Kõljalg U. Towards global patterns in the diversity and community structure of ectomycorrhizal fungi. Molecular Ecology. 21: 4160-70. PMID 22568722 DOI: 10.1111/J.1365-294X.2012.05602.X  0.414
2012 Nilsson RH, Tedersoo L, Abarenkov K, Ryberg M, Kristiansson E, Hartmann M, Schoch CL, Nylander JAA, Bergsten J, Porter TM, Jumpponen A, Vaishampayan P, Ovaskainen O, Hallenberg N, Bengtsson-Palme J, et al. Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences Mycokeys. 4: 37-63. DOI: 10.3897/mycokeys.4.3606  0.333
2011 Henrik Nilsson R, Ryberg M, Sjökvist E, Abarenkov K. Rethinking taxon sampling in the light of environmental sequencing. Cladistics : the International Journal of the Willi Hennig Society. 27: 197-203. PMID 34875775 DOI: 10.1111/j.1096-0031.2010.00336.x  0.497
2011 Tedersoo L, Abarenkov K, Nilsson RH, Schüssler A, Grelet GA, Kohout P, Oja J, Bonito GM, Veldre V, Jairus T, Ryberg M, Larsson KH, Kõljalg U. Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi. Plos One. 6: e24940. PMID 21949797 DOI: 10.1371/Journal.Pone.0024940  0.45
2011 Ryberg M, Andreasen M, Björk RG. Weak habitat specificity in ectomycorrhizal communities associated with Salix herbacea and Salix polaris in alpine tundra. Mycorrhiza. 21: 289-96. PMID 20680357 DOI: 10.1007/s00572-010-0335-1  0.344
2011 Tedersoo L, Abarenkov K, Nilsson RH, Schüssler A, Grelet G, Kohout P, Oja J, Bonito GM, Veldre V, Jairus T, Ryberg M, Larsson K, Kõljalg U. Tidying up international nucleotide sequence databases Plos One. DOI: 10.5282/Ubm/Epub.15397  0.448
2010 Nilsson RH, Abarenkov K, Veldre V, Nylinder S, DE Wit P, Brosché S, Alfredsson JF, Ryberg M, Kristiansson E. An open source chimera checker for the fungal ITS region. Molecular Ecology Resources. 10: 1076-81. PMID 21565119 DOI: 10.1111/j.1755-0998.2010.02850.x  0.487
2010 Ryberg M, Larsson E, Jacobsson S. An evolutionary perspective on morphological and ecological characters in the mushroom family Inocybaceae (Agaricomycotina, Fungi). Molecular Phylogenetics and Evolution. 55: 431-42. PMID 20170738 DOI: 10.1016/j.ympev.2010.02.011  0.71
2010 Henrik Nilsson R, Ryberg M, Sjökvist E, Abarenkov K. Rethinking taxon sampling in the light of environmental sequencing Cladistics. 27: 197-203. DOI: 10.1111/j.1096-0031.2010.00336.x  0.301
2010 Nilsson RH, Veldre V, Hartmann M, Unterseher M, Amend A, Bergsten J, Kristiansson E, Ryberg M, Jumpponen A, Abarenkov K. An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology Fungal Ecology. 3: 284-287. DOI: 10.1016/J.Funeco.2010.05.002  0.423
2009 Larsson E, Ryberg M, Moreau PA, Delcuse Mathiesen A, Jacobsson S. Taxonomy and evolutionary relationships within species of section Rimosae (Inocybe) based on ITS, LSU and mtSSU sequence data. Persoonia. 23: 86-98. PMID 20198163 DOI: 10.3767/003158509X475913  0.352
2009 Nilsson RH, Ryberg M, Abarenkov K, Sjökvist E, Kristiansson E. The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. Fems Microbiology Letters. 296: 97-101. PMID 19459974 DOI: 10.1111/j.1574-6968.2009.01618.x  0.504
2009 Nilsson RH, Bok G, Ryberg M, Kristiansson E, Hallenberg N. A software pipeline for processing and identification of fungal ITS sequences. Source Code For Biology and Medicine. 4: 1. PMID 19146660 DOI: 10.1186/1751-0473-4-1  0.743
2009 Ryberg M, Kristiansson E, Sjökvist E, Nilsson RH. An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity. The New Phytologist. 181: 471-477. PMID 19121041 DOI: 10.1111/j.1469-8137.2008.02667.x  0.439
2009 Ryberg M, Larsson E, Molau U. Ectomycorrhizal Diversity on Dryas octopetala and Salix reticulata in an Alpine Cliff Ecosystem Arctic, Antarctic, and Alpine Research. 41: 506-514. DOI: 10.1657/1938-4246-41.4.506  0.333
2008 Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson KH. Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification. Evolutionary Bioinformatics Online. 4: 193-201. PMID 19204817  0.744
2008 Ryberg M, Nilsson RH, Kristiansson E, Töpel M, Jacobsson S, Larsson E. Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota). Bmc Evolutionary Biology. 8: 50. PMID 18282272 DOI: 10.1186/1471-2148-8-50  0.756
2008 Nordén B, Götmark F, Ryberg M, Paltto H, Allmér J. Partial cutting reduces species richness of fungi on woody debris in oak-rich forests Canadian Journal of Forest Research. 38: 1807-1816. DOI: 10.1139/X08-031  0.34
2008 Hallenberg N, Ryberg M, Nilsson RH, Wood AR, Wu SH. Pseudolagarobasidium (Basidiomycota): On the reinstatement of a genus of parasitic, saprophytic, and endophytic resupinate fungi Botany. 86: 1319-1325. DOI: 10.1139/B08-088  0.337
2006 Nilsson RH, Ryberg M, Kristiansson E, Abarenkov K, Larsson KH, Kõljalg U. Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective. Plos One. 1: e59. PMID 17183689 DOI: 10.1371/journal.pone.0000059  0.367
2005 Nilsson RH, Kristiansson E, Ryberg M, Larsson KH. Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi. Bmc Bioinformatics. 6: 178. PMID 16022740 DOI: 10.1186/1471-2105-6-178  0.485
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