| Year |
Citation |
Score |
| 2024 |
Zhao R, Wu WA, Huang YH, Li XK, Han JQ, Jiao W, Su YN, Zhao H, Zhou Y, Cao WQ, Zhang X, Wei W, Zhang WK, Song QX, He XJ, et al. An RRM domain protein SOE suppresses transgene silencing in rice. The New Phytologist. PMID 38509454 DOI: 10.1111/nph.19686 |
0.559 |
|
| 2023 |
Zheng SY, Guan BB, Yuan DY, Zhao QQ, Ge W, Tan LM, Chen SS, Li L, Chen S, Xu RM, He XJ. Dual roles of the Arabidopsis PEAT complex in histone H2A deubiquitination and H4K5 acetylation. Molecular Plant. PMID 37822080 DOI: 10.1016/j.molp.2023.10.006 |
0.423 |
|
| 2023 |
Zhou J, Lei X, Shafiq S, Zhang W, Li Q, Li K, Zhu J, Dong Z, He XJ, Sun Q. DDM1-mediated R-loop resolution and H2A.Z exclusion facilitates heterochromatin formation in Arabidopsis. Science Advances. 9: eadg2699. PMID 37566662 DOI: 10.1126/sciadv.adg2699 |
0.359 |
|
| 2023 |
Du P, Wang Q, Yuan DY, Chen SS, Su YN, Li L, Chen S, He XJ. WRKY transcription factors and OBERON histone-binding proteins form complexes to balance plant growth and stress tolerance. The Embo Journal. e113639. PMID 37565504 DOI: 10.15252/embj.2023113639 |
0.381 |
|
| 2023 |
Wu CJ, Yuan DY, Liu ZZ, Xu X, Wei L, Cai XW, Su YN, Li L, Chen S, He XJ. Conserved and plant-specific histone acetyltransferase complexes cooperate to regulate gene transcription and plant development. Nature Plants. PMID 36879016 DOI: 10.1038/s41477-023-01359-3 |
0.492 |
|
| 2022 |
Guo J, Cai G, Li YQ, Zhang YX, Su YN, Yuan DY, Zhang ZC, Liu ZZ, Cai XW, Guo J, Li L, Chen S, He XJ. Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes. Nature Plants. PMID 36471048 DOI: 10.1038/s41477-022-01282-z |
0.381 |
|
| 2022 |
Shang JY, Cai XW, Su YN, Zhang ZC, Wang X, Zhao N, He XJ. Arabidopsis Trithorax histone methyltransferases are redundant in regulating development and DNA methylation. Journal of Integrative Plant Biology. PMID 36354145 DOI: 10.1111/jipb.13406 |
0.582 |
|
| 2022 |
Qi PL, Zhou HR, Zhao QQ, Feng C, Ning YQ, Su YN, Cai XW, Yuan DY, Zhang ZC, Su XM, Chen SS, Li L, Chen S, He XJ. Characterization of an autonomous pathway complex that promotes flowering in Arabidopsis. Nucleic Acids Research. PMID 35766439 DOI: 10.1093/nar/gkac551 |
0.492 |
|
| 2022 |
Zhou JX, Su XM, Zheng SY, Wu CJ, Su YN, Jiang Z, Li L, Chen S, He XJ. The Arabidopsis NuA4 histone acetyltransferase complex is required for chlorophyll biosynthesis and photosynthesis. Journal of Integrative Plant Biology. PMID 35043580 DOI: 10.1111/jipb.13227 |
0.405 |
|
| 2022 |
Zhao N, Su XM, Liu ZW, Zhou JX, Su YN, Cai XW, Chen L, Wu Z, He XJ. The RNA recognition motif-containing protein UBA2c prevents early flowering by promoting transcription of the flowering repressor FLM in Arabidopsis. The New Phytologist. 233: 751-765. PMID 34724229 DOI: 10.1111/nph.17836 |
0.818 |
|
| 2021 |
Shang JY, He XJ. Chromatin-remodeling complexes: conserved and plant-specific subunits in Arabidopsis. Journal of Integrative Plant Biology. PMID 34964264 DOI: 10.1111/jipb.13208 |
0.379 |
|
| 2021 |
Shang JY, Lu YJ, Cai XW, Su YN, Feng C, Li L, Chen S, He XJ. COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis. The Plant Cell. PMID 34270751 DOI: 10.1093/plcell/koab187 |
0.308 |
|
| 2021 |
Feng C, Cai XW, Su YN, Li L, Chen S, He XJ. Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34144927 DOI: 10.1016/j.jgg.2021.04.004 |
0.452 |
|
| 2021 |
Zhou JX, Du P, Liu ZW, Feng C, Cai XW, He XJ. FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin. The Plant Journal : For Cell and Molecular Biology. PMID 33942410 DOI: 10.1111/tpj.15302 |
0.846 |
|
| 2021 |
Wu CJ, Liu ZZ, Wei L, Zhou JX, Cai XW, Su YN, Li L, Chen S, He XJ. Three functionally redundant plant-specific paralogs are core subunits of the SAGA histone acetyltransferase complex in Arabidopsis. Molecular Plant. PMID 33737195 DOI: 10.1016/j.molp.2021.03.014 |
0.313 |
|
| 2021 |
Qian F, Zhao QY, Zhang TN, Li YL, Su YN, Li L, Sui JH, Chen S, He XJ. A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. Journal of Integrative Plant Biology. PMID 33433058 DOI: 10.1111/jipb.13067 |
0.442 |
|
| 2020 |
Liu ZW, Zhao N, Su YN, Chen SS, He XJ. Publisher Correction: Exogenously overexpressed intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis. Scientific Reports. 10: 22409. PMID 33361771 DOI: 10.1038/s41598-020-79079-3 |
0.805 |
|
| 2020 |
Guo J, Wei L, Chen SS, Cai XW, Su YN, Li L, Chen S, He XJ. The CBP/p300 histone acetyltransferases function as plant-specific MEDIATOR subunits in Arabidopsis. Journal of Integrative Plant Biology. PMID 33325122 DOI: 10.1111/jipb.13052 |
0.507 |
|
| 2020 |
Ning YQ, Liu N, Lan KK, Su YN, Li L, Chen S, He XJ. DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. Nature Plants. PMID 32661276 DOI: 10.1038/s41477-020-0710-7 |
0.532 |
|
| 2020 |
Zhou HR, Lin RN, Huang HW, Li L, Cai T, Zhu JK, Chen S, He XJ. The CCR4-NOT complex component NOT1 regulates RNA-directed DNA methylation and transcriptional silencing by facilitating Pol IV-dependent siRNA production. The Plant Journal : For Cell and Molecular Biology. PMID 32412137 DOI: 10.1111/Tpj.14818 |
0.77 |
|
| 2020 |
Gu BW, Tan LM, Zhang CJ, Hou XM, Cai XW, Chen S, He XJ. FHA2 is a plant-specific ISWI subunit responsible for stamen development and plant fertility. Journal of Integrative Plant Biology. PMID 32396248 DOI: 10.1111/jipb.12945 |
0.364 |
|
| 2020 |
Tan LM, Liu R, Gu BW, Zhang CJ, Luo J, Guo J, Wang Y, Chen L, Du X, Li S, Shao CR, Su YN, Cai XW, Lin RN, Li L, ... ... He XJ, et al. Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. The Plant Cell. PMID 32358072 DOI: 10.1105/tpc.19.00944 |
0.475 |
|
| 2020 |
Luo YX, Hou XM, Zhang CJ, Tan LM, Shao CR, Lin RN, Su YN, Cai XW, Li L, Chen S, He XJ. A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. The Embo Journal. e102008. PMID 32115743 DOI: 10.15252/embj.2019102008 |
0.391 |
|
| 2020 |
Liu ZW, Zhao N, Su YN, Chen SS, He XJ. Exogenously overexpressed intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis. Scientific Reports. 10: 3094. PMID 32080227 DOI: 10.1038/s41598-020-59697-7 |
0.801 |
|
| 2019 |
Ning YQ, Chen Q, Lin RN, Li YQ, Li L, Chen S, He XJ. The HDA19 histone deacetylase complex is involved in the regulation of flowering time in a photoperiod-dependent manner. The Plant Journal : For Cell and Molecular Biology. PMID 30828924 DOI: 10.1111/tpj.14229 |
0.404 |
|
| 2018 |
Zhao QQ, Lin RN, Li L, Chen S, He XJ. A methylated-DNA-binding complex required for plant development mediates transcriptional activation of promoter methylated genes. Journal of Integrative Plant Biology. PMID 30589221 DOI: 10.1111/jipb.12767 |
0.599 |
|
| 2018 |
Zhang C, Du X, Tang K, Yang Z, Pan L, Zhu P, Luo J, Jiang Y, Zhang H, Wan H, Wang X, Wu F, Tao WA, He XJ, Zhang H, et al. Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin. Nature Communications. 9: 4547. PMID 30382101 DOI: 10.1038/S41467-018-06965-W |
0.775 |
|
| 2018 |
Tan LM, Zhang CJ, Hou XM, Shao CR, Lu YJ, Zhou JX, Li YQ, Li L, Chen S, He XJ. The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing. The Embo Journal. PMID 30104406 DOI: 10.15252/embj.201798770 |
0.593 |
|
| 2018 |
Zhao QY, He XJ. Exploring potential roles for the interaction of MOM1 with SUMO and the SUMO E3 ligase-like protein PIAL2 in transcriptional silencing. Plos One. 13: e0202137. PMID 30092097 DOI: 10.1371/journal.pone.0202137 |
0.391 |
|
| 2018 |
Zhou JX, Liu ZW, Li YQ, Li L, Wang B, Chen S, He XJ. Arabidopsis PWWP domain proteins mediate H3K27 trimethylation on FLC and regulate flowering time. Journal of Integrative Plant Biology. PMID 29314758 DOI: 10.1111/jipb.12630 |
0.786 |
|
| 2017 |
Luo YX, Han YF, Zhao QY, Du JL, Dou K, Li L, Chen S, He XJ. Sumoylation of SUVR2 contributes to its role in transcriptional gene silencing. Science China. Life Sciences. PMID 28895115 DOI: 10.1007/s11427-017-9146-2 |
0.793 |
|
| 2017 |
Yang R, Zheng Z, Chen Q, Yang L, Huang H, Miki D, Wu W, Zeng L, Liu J, Zhou JX, Ogas J, Zhu JK, He XJ, Zhang H. The developmental regulator PKL is required to maintain correct DNA methylation patterns at RNA-directed DNA methylation loci. Genome Biology. 18: 103. PMID 28569170 DOI: 10.1186/S13059-017-1226-Y |
0.727 |
|
| 2017 |
Wang L, Kong D, Lv Q, Niu GQ, Han T, Zhao X, Meng S, Cheng Q, Guo S, Du J, Wu Z, Wang J, Bao F, Hu Y, Pan X, ... ... He XJ, et al. Tetrahydrofolate modulates Floral Transition through Epigenetic Silencing. Plant Physiology. PMID 28450424 DOI: 10.1104/pp.16.01750 |
0.511 |
|
| 2016 |
Zhang CJ, Hou XM, Tan LM, Shao CR, Huang HW, Li YQ, Li L, Cai T, Chen S, He XJ. The Arabidopsis acetylated histone-binding protein BRAT1 forms a complex with BRP1 and prevents transcriptional silencing. Nature Communications. 7: 11715. PMID 27273316 DOI: 10.1038/ncomms11715 |
0.613 |
|
| 2016 |
Liu ZW, Zhou JX, Huang HW, Li YQ, Shao CR, Li L, Cai T, Chen S, He XJ. Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in Arabidopsis. Plos Genetics. 12: e1006026. PMID 27171427 DOI: 10.1371/journal.pgen.1006026 |
0.855 |
|
| 2016 |
Han YF, Zhao QY, Dang LL, Luo YX, Chen SS, Shao CR, Huang HW, Li YQ, Li L, Cai T, Chen S, He XJ. The SUMO E3 ligase-like proteins PIAL1 and PIAL2 interact with MOM1 and form a novel complex required for transcriptional silencing. The Plant Cell. PMID 27113777 DOI: 10.1105/tpc.15.00997 |
0.388 |
|
| 2015 |
Ye R, Chen Z, Lian B, Rowley MJ, Xia N, Chai J, Li Y, He XJ, Wierzbicki AT, Qi Y. A Dicer-Independent Route for Biogenesis of siRNAs that Direct DNA Methylation in Arabidopsis. Molecular Cell. PMID 26711010 DOI: 10.1016/J.Molcel.2015.11.015 |
0.617 |
|
| 2015 |
Chan Z, Wang Y, Cao M, Gong Y, Mu Z, Wang H, Hu Y, Deng X, He XJ, Zhu JK. RDM4 modulates cold stress resistance in Arabidopsis partially through the CBF-mediated pathway. The New Phytologist. PMID 26522658 DOI: 10.1111/Nph.13727 |
0.67 |
|
| 2015 |
Wang J, Telese F, Tan Y, Li W, Jin C, He X, Basnet H, Ma Q, Merkurjev D, Zhu X, Liu Z, Zhang J, Ohgi K, Taylor H, White RR, et al. LSD1n is an H4K20 demethylase regulating memory formation via transcriptional elongation control. Nature Neuroscience. PMID 26214369 DOI: 10.1038/Nn.4069 |
0.308 |
|
| 2015 |
Li W, Hu Y, Oh S, Ma Q, Merkurjev D, Song X, Zhou X, Liu Z, Tanasa B, He X, Chen AY, Ohgi K, Zhang J, Liu W, Rosenfeld MG. Condensin I and II Complexes License Full Estrogen Receptor α-Dependent Enhancer Activation. Molecular Cell. 59: 188-202. PMID 26166704 DOI: 10.1016/J.Molcel.2015.06.002 |
0.332 |
|
| 2015 |
Han YF, Huang HW, Li L, Cai T, Chen S, He XJ. The Cytosolic Iron-Sulfur Cluster Assembly Protein MMS19 Regulates Transcriptional Gene Silencing, DNA Repair, and Flowering Time in Arabidopsis. Plos One. 10: e0129137. PMID 26053632 DOI: 10.1371/journal.pone.0129137 |
0.383 |
|
| 2015 |
Du JL, Zhang SW, Huang HW, Cai T, Li L, Chen S, He XJ. The Splicing Factor PRP31 Is Involved in Transcriptional Gene Silencing and Stress Response in Arabidopsis. Molecular Plant. 8: 1053-68. PMID 25684655 DOI: 10.1016/j.molp.2015.02.003 |
0.559 |
|
| 2015 |
Du JL, Zhang SW, Huang HW, Cai T, Li L, Chen S, He XJ. The Splicing Factor PRP31 Is Involved in Transcriptional Gene Silencing and Stress Response in Arabidopsis. Molecular Plant. 8: 1053-68. PMID 25684655 DOI: 10.1016/j.molp.2015.02.003 |
0.559 |
|
| 2015 |
Ning YQ, Ma ZY, Huang HW, Mo H, Zhao TT, Li L, Cai T, Chen S, Ma L, He XJ. Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14. Nucleic Acids Research. 43: 1469-84. PMID 25578968 DOI: 10.1093/nar/gku1382 |
0.567 |
|
| 2015 |
Ning YQ, Ma ZY, Huang HW, Mo H, Zhao TT, Li L, Cai T, Chen S, Ma L, He XJ. Two novel NAC transcription factors regulate gene expression and flowering time by associating with the histone demethylase JMJ14. Nucleic Acids Research. 43: 1469-84. PMID 25578968 DOI: 10.1093/nar/gku1382 |
0.567 |
|
| 2014 |
Han YF, Dou K, Ma ZY, Zhang SW, Huang HW, Li L, Cai T, Chen S, Zhu JK, He XJ. SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis. Cell Research. 24: 1445-65. PMID 25420628 DOI: 10.1038/Cr.2014.156 |
0.837 |
|
| 2014 |
He XJ, Ma ZY, Liu ZW. Non-coding RNA transcription and RNA-directed DNA methylation in Arabidopsis. Molecular Plant. 7: 1406-1414. PMID 24966349 DOI: 10.1093/mp/ssu075 |
0.82 |
|
| 2014 |
He XJ, Ma ZY, Liu ZW. Non-coding RNA transcription and RNA-directed DNA methylation in Arabidopsis. Molecular Plant. 7: 1406-1414. PMID 24966349 DOI: 10.1093/mp/ssu075 |
0.565 |
|
| 2014 |
Liu ZW, Shao CR, Zhang CJ, Zhou JX, Zhang SW, Li L, Chen S, Huang HW, Cai T, He XJ. The SET domain proteins SUVH2 and SUVH9 are required for Pol V occupancy at RNA-directed DNA methylation loci. Plos Genetics. 10: e1003948. PMID 24465213 DOI: 10.1371/journal.pgen.1003948 |
0.839 |
|
| 2013 |
Huang CF, Miki D, Tang K, Zhou HR, Zheng Z, Chen W, Ma ZY, Yang L, Zhang H, Liu R, He XJ, Zhu JK. A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis. Plos Genetics. 9: e1003779. PMID 24068953 DOI: 10.1371/Journal.Pgen.1003779 |
0.84 |
|
| 2013 |
Zhou HR, Zhang FF, Ma ZY, Huang HW, Jiang L, Cai T, Zhu JK, Zhang C, He XJ. Folate polyglutamylation is involved in chromatin silencing by maintaining global DNA methylation and histone H3K9 dimethylation in Arabidopsis. The Plant Cell. 25: 2545-59. PMID 23881414 DOI: 10.1105/Tpc.113.114678 |
0.674 |
|
| 2013 |
Dou K, Huang CF, Ma ZY, Zhang CJ, Zhou JX, Huang HW, Cai T, Tang K, Zhu JK, He XJ. The PRP6-like splicing factor STA1 is involved in RNA-directed DNA methylation by facilitating the production of Pol V-dependent scaffold RNAs. Nucleic Acids Research. 41: 8489-502. PMID 23877244 DOI: 10.1093/Nar/Gkt639 |
0.819 |
|
| 2013 |
Zhang H, Ma ZY, Zeng L, Tanaka K, Zhang CJ, Ma J, Bai G, Wang P, Zhang SW, Liu ZW, Cai T, Tang K, Liu R, Shi X, He XJ, et al. DTF1 is a core component of RNA-directed DNA methylation and may assist in the recruitment of Pol IV. Proceedings of the National Academy of Sciences of the United States of America. 110: 8290-5. PMID 23637343 DOI: 10.1073/pnas.1300585110 |
0.846 |
|
| 2013 |
Zhang CJ, Zhou JX, Liu J, Ma ZY, Zhang SW, Dou K, Huang HW, Cai T, Liu R, Zhu JK, He XJ. The splicing machinery promotes RNA-directed DNA methylation and transcriptional silencing in Arabidopsis. The Embo Journal. 32: 1128-40. PMID 23524848 DOI: 10.1038/Emboj.2013.49 |
0.849 |
|
| 2012 |
Zhang CJ, Ning YQ, Zhang SW, Chen Q, Shao CR, Guo YW, Zhou JX, Li L, Chen S, He XJ. IDN2 and its paralogs form a complex required for RNA-directed DNA methylation. Plos Genetics. 8: e1002693. PMID 22570638 DOI: 10.1371/journal.pgen.1002693 |
0.556 |
|
| 2012 |
Zhang CJ, Ning YQ, Zhang SW, Chen Q, Shao CR, Guo YW, Zhou JX, Li L, Chen S, He XJ. IDN2 and its paralogs form a complex required for RNA-directed DNA methylation. Plos Genetics. 8: e1002693. PMID 22570638 DOI: 10.1371/journal.pgen.1002693 |
0.556 |
|
| 2011 |
Liu J, Bai G, Zhang C, Chen W, Zhou J, Zhang S, Chen Q, Deng X, He XJ, Zhu JK. An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing. Cell Research. 21: 1691-700. PMID 22064704 DOI: 10.1038/Cr.2011.173 |
0.77 |
|
| 2011 |
He XJ, Chen T, Zhu JK. Regulation and function of DNA methylation in plants and animals. Cell Research. 21: 442-65. PMID 21321601 DOI: 10.1038/cr.2011.23 |
0.691 |
|
| 2010 |
Zheng Z, Xing Y, He XJ, Li W, Hu Y, Yadav SK, Oh J, Zhu JK. An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis. The Plant Journal : For Cell and Molecular Biology. 62: 92-9. PMID 20059743 DOI: 10.1111/J.1365-313X.2010.04130.X |
0.762 |
|
| 2009 |
He XJ, Hsu YF, Zhu S, Liu HL, Pontes O, Zhu J, Cui X, Wang CS, Zhu JK. A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development. Genes & Development. 23: 2717-22. PMID 19903758 DOI: 10.1101/Gad.1851809 |
0.728 |
|
| 2009 |
He XJ, Hsu YF, Zhu S, Wierzbicki AT, Pontes O, Pikaard CS, Liu HL, Wang CS, Jin H, Zhu JK. An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein. Cell. 137: 498-508. PMID 19410546 DOI: 10.1016/J.Cell.2009.04.028 |
0.758 |
|
| 2009 |
He XJ, Hsu YF, Pontes O, Zhu J, Lu J, Bressan RA, Pikaard C, Wang CS, Zhu JK. NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation. Genes & Development. 23: 318-30. PMID 19204117 DOI: 10.1101/Gad.1765209 |
0.793 |
|
| 2008 |
Li WX, Oono Y, Zhu J, He XJ, Wu JM, Iida K, Lu XY, Cui X, Jin H, Zhu JK. The Arabidopsis NFYA5 transcription factor is regulated transcriptionally and posttranscriptionally to promote drought resistance. The Plant Cell. 20: 2238-51. PMID 18682547 DOI: 10.1105/Tpc.108.059444 |
0.446 |
|
| 2003 |
Wang YJ, Zhang ZG, He XJ, Zhou HL, Wen YX, Dai JX, Zhang JS, Chen SY. A rice transcription factor OsbHLH1 is involved in cold stress response. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 1402-9. PMID 12920519 DOI: 10.1007/S00122-003-1378-X |
0.37 |
|
| 2003 |
Wang YJ, Zhang ZG, He XJ, Zhou HL, Wen YX, Dai JX, Zhang JS, Chen SY. A rice transcription factor OsbHLH1 is involved in cold stress response. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 1402-9. PMID 12920519 DOI: 10.1007/S00122-003-1378-X |
0.37 |
|
| Show low-probability matches. |