| Year |
Citation |
Score |
| 2023 |
Jung Y, Geng C, Bonvin AMJJ, Xue LC, Honavar VG. MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein-Protein Docking Conformations. Biomolecules. 13. PMID 36671507 DOI: 10.3390/biom13010121 |
0.396 |
|
| 2021 |
Renaud N, Geng C, Georgievska S, Ambrosetti F, Ridder L, Marzella DF, Réau MF, Bonvin AMJJ, Xue LC. DeepRank: a deep learning framework for data mining 3D protein-protein interfaces. Nature Communications. 12: 7068. PMID 34862392 DOI: 10.1038/s41467-021-27396-0 |
0.728 |
|
| 2020 |
Renaud N, Jung Y, Honavar V, Geng C, Bonvin AMJJ, Xue LC. iScore: An MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines. Softwarex. 11. PMID 35419466 DOI: 10.1016/j.softx.2020.100462 |
0.311 |
|
| 2019 |
Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue LC, Honorato RV, Moreira I, Kurkcuoglu Z, Vangone A, Bonvin AMJJ. An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. Proteins. PMID 31886559 DOI: 10.1002/Prot.25869 |
0.612 |
|
| 2019 |
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, ... ... Geng C, et al. Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment. Proteins. PMID 31612567 DOI: 10.1002/Prot.25838 |
0.692 |
|
| 2019 |
Geng C, Jung Y, Renaud N, Honavar V, Bonvin AMJJ, Xue LC. iScore: A novel graph kernel-based function for scoring protein-protein docking models. Bioinformatics (Oxford, England). PMID 31199455 DOI: 10.1093/bioinformatics/btz496 |
0.381 |
|
| 2019 |
Vangone A, Schaarschmidt J, Koukos P, Geng C, Citro N, Trellet ME, Xue LC, Bonvin AMJJ. Large-scale prediction of binding affinity in protein-small ligand complexes: the PRODIGY-LIG web server. Bioinformatics (Oxford, England). 35: 1585-1587. PMID 31051038 DOI: 10.1093/bioinformatics/bty816 |
0.745 |
|
| 2018 |
Geng C, Vangone A, Folkers GE, Xue LC, Bonvin AMJJ. iSEE: Interface Structure, Evolution and Energy-based machine learning predictor of binding affinity changes upon mutations. Proteins. PMID 30417935 DOI: 10.1002/prot.25630 |
0.744 |
|
| 2017 |
Kurkcuoglu Z, Koukos PI, Citro N, Trellet ME, Rodrigues JPGLM, Moreira IS, Roel-Touris J, Melquiond ASJ, Geng C, Schaarschmidt J, Xue LC, Vangone A, Bonvin AMJJ. Performance of HADDOCK and a simple contact-based protein-ligand binding affinity predictor in the D3R Grand Challenge 2. Journal of Computer-Aided Molecular Design. PMID 28831657 DOI: 10.1007/S10822-017-0049-Y |
0.687 |
|
| 2017 |
Geng C, Narasimhan S, Rodrigues JP, Bonvin AM. Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK. Methods in Molecular Biology (Clifton, N.J.). 1561: 109-138. PMID 28236236 DOI: 10.1007/978-1-4939-6798-8_8 |
0.675 |
|
| 2016 |
Geng C, Vangone A, Bonvin AM. Exploring the interplay between experimental methods and the performance of predictors of binding affinity change upon mutations in protein complexes. Protein Engineering, Design & Selection : Peds. PMID 27284087 DOI: 10.1093/protein/gzw020 |
0.785 |
|
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