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Mohamed Nadhir Djekidel - Publications

Affiliations: 
2021- Center for Applied BioInformatics St Jude Children's Research Hospital, New York, NY, United States 
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Lim B, Djekidel MN, Matsui Y, Jung S, Yuan ZF, Wang X, Yang X, Pilehroud AS, Pan H, Wang F, Pruett-Miller S, Kavdia K, Pagala V, Fan Y, Peng J, et al. Phosphorylation of 53BP1 by ATM enforce neurodevelopmental programs in cortical organoids. Biorxiv : the Preprint Server For Biology. PMID 37205560 DOI: 10.1101/2023.05.04.539457  0.551
2023 Wright S, Hu J, Wang H, Hyle J, Zhang Y, Du G, Konopleva MY, Kornblau SM, Djekidel MN, Rosikiewicz W, Xu B, Lu R, Yang JJ, Li C. Interrogating bromodomain inhibitor resistance in KMT2A-rearranged leukemia through combinatorial CRISPR screens. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220134120. PMID 37036970 DOI: 10.1073/pnas.2220134120  0.551
2023 Hyle J, Djekidel MN, Williams J, Wright S, Shao Y, Xu B, Li C. Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation. Genome Biology. 24: 14. PMID 36698211 DOI: 10.1186/s13059-022-02843-3  0.64
2022 Chen R, Liu Y, Djekidel MN, Chen W, Bhattacherjee A, Chen Z, Scolnick E, Zhang Y. Cell type-specific mechanism of Setd1a heterozygosity in schizophrenia pathogenesis. Science Advances. 8: eabm1077. PMID 35245111 DOI: 10.1126/sciadv.abm1077  0.425
2021 Wang Y, Wang M, Djekidel MN, Chen H, Liu D, Alt FW, Zhang Y. eccDNAs are apoptotic products with high innate immunostimulatory activity. Nature. 599: 308-314. PMID 34671165 DOI: 10.1038/s41586-021-04009-w  0.326
2021 Chen R, Blosser TR, Djekidel MN, Hao J, Bhattacherjee A, Chen W, Tuesta LM, Zhuang X, Zhang Y. Decoding molecular and cellular heterogeneity of mouse nucleus accumbens. Nature Neuroscience. 24: 1757-1771. PMID 34663959 DOI: 10.1038/s41593-021-00938-x  0.706
2021 Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Acute depletion of CTCF rewires genome-wide chromatin accessibility. Genome Biology. 22: 244. PMID 34429148 DOI: 10.1186/s13059-021-02466-0  0.617
2021 Djekidel MN, Rosikiewicz W, Peng JC, Kanneganti TD, Hui Y, Jin H, Hedges D, Schreiner P, Fan Y, Wu G, Xu B. CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes. Biorxiv : the Preprint Server For Biology. PMID 34075382 DOI: 10.1101/2021.05.14.444026  0.579
2021 Chen Z, Djekidel MN, Zhang Y. Distinct dynamics and functions of H2AK119ub1 and H3K27me3 in mouse preimplantation embryos. Nature Genetics. PMID 33821005 DOI: 10.1038/s41588-021-00821-2  0.338
2019 Bhattacherjee A, Djekidel MN, Chen R, Chen W, Tuesta LM, Zhang Y. Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction. Nature Communications. 10: 4169. PMID 31519873 DOI: 10.1038/S41467-019-12054-3  0.717
2019 Fu X, Wu X, Djekidel MN, Zhang Y. Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells. Nature Cell Biology. PMID 31209294 DOI: 10.1038/S41556-019-0343-0  0.352
2019 Tuesta LM, Djekidel MN, Chen R, Lu F, Wang W, Sabatini BL, Zhang Y. In vivo nuclear capture and molecular profiling identifies Gmeb1 as a transcriptional regulator essential for dopamine neuron function. Nature Communications. 10: 2508. PMID 31175277 DOI: 10.1038/S41467-019-10267-0  0.665
2018 Djekidel MN, Inoue A, Matoba S, Suzuki T, Zhang C, Lu F, Jiang L, Zhang Y. Reprogramming of Chromatin Accessibility in Somatic Cell Nuclear Transfer Is DNA Replication Independent. Cell Reports. 23: 1939-1947. PMID 29768195 DOI: 10.1016/J.Celrep.2018.04.036  0.639
2018 Djekidel MN, Chen Y, Zhang MQ. FIND: difFerential chromatin INteractions Detection using a spatial Poisson process. Genome Research. PMID 29440282 DOI: 10.1101/Gr.212241.116  0.397
2018 Li Y, He Y, Liang Z, Wang Y, Chen F, Djekidel MN, Li G, Zhang X, Xiang S, Wang Z, Gao J, Zhang MQ, Chen Y. Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation. Cell Death & Disease. 9: 200. PMID 29422670 DOI: 10.1038/S41419-017-0173-6  0.524
2017 Liang Z, Li G, Wang Z, Djekidel MN, Li Y, Qian MP, Zhang MQ, Chen Y. BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions. Nature Communications. 8: 1622. PMID 29158486 DOI: 10.1038/S41467-017-01754-3  0.48
2016 Djekidel MN, Wang M, Zhang MQ, Gao J. HiC-3DViewer: a new tool to visualize Hi-C data in 3D space Quantitative Biology. 5: 183-190. DOI: 10.1007/s40484-017-0091-8  0.325
2016 Gao J, Yang X, Djekidel MN, Wang Y, Xi P, Zhang MQ. Developing bioimaging and quantitative methods to study 3D genome Quantitative Biology. 4: 129-147. DOI: 10.1007/s40484-016-0065-2  0.354
2015 Djekidel MN, Liang Z, Wang Q, Hu Z, Li G, Chen Y, Zhang MQ. 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process. Genome Biology. 16: 288. PMID 26694485 DOI: 10.1186/S13059-015-0851-6  0.433
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