| Year |
Citation |
Score |
| 2024 |
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, et al. Author Correction: Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. PMID 38200319 DOI: 10.1038/s41586-023-07013-4 |
0.714 |
|
| 2024 |
Cai M, Zhou J, McKennan C, Wang J. scMD facilitates cell type deconvolution using single-cell DNA methylation references. Communications Biology. 7: 1. PMID 38168620 DOI: 10.1038/s42003-023-05690-5 |
0.45 |
|
| 2023 |
Zhou J, Zhang Z, Wu M, Liu H, Pang Y, Bartlett A, Peng Z, Ding W, Rivkin A, Lagos WN, Williams E, Lee CT, Miyazaki PA, Aldridge A, Zeng Q, et al. Brain-wide correspondence of neuronal epigenomics and distant projections. Nature. 624: 355-365. PMID 38092919 DOI: 10.1038/s41586-023-06823-w |
0.822 |
|
| 2023 |
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, et al. Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. 624: 390-402. PMID 38092918 DOI: 10.1038/s41586-023-06819-6 |
0.773 |
|
| 2023 |
Zu S, Li YE, Wang K, Armand EJ, Mamde S, Amaral ML, Wang Y, Chu A, Xie Y, Miller M, Xu J, Wang Z, Zhang K, Jia B, Hou X, ... ... Zhou J, et al. Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature. 624: 378-389. PMID 38092917 DOI: 10.1038/s41586-023-06824-9 |
0.794 |
|
| 2023 |
Liu H, Zeng Q, Zhou J, Bartlett A, Wang BA, Berube P, Tian W, Kenworthy M, Altshul J, Nery JR, Chen H, Castanon RG, Zu S, Li YE, Lucero J, et al. Single-cell DNA methylome and 3D multi-omic atlas of the adult mouse brain. Nature. 624: 366-377. PMID 38092913 DOI: 10.1038/s41586-023-06805-y |
0.743 |
|
| 2023 |
Tian W, Zhou J, Bartlett A, Zeng Q, Liu H, Castanon RG, Kenworthy M, Altshul J, Valadon C, Aldridge A, Nery JR, Chen H, Xu J, Johnson ND, Lucero J, et al. Single-cell DNA methylation and 3D genome architecture in the human brain. Science (New York, N.Y.). 382: eadf5357. PMID 37824674 DOI: 10.1126/science.adf5357 |
0.836 |
|
| 2023 |
Cai M, Zhou J, McKennan C, Wang J. scMD: cell type deconvolution using single-cell DNA methylation references. Biorxiv : the Preprint Server For Biology. PMID 37577715 DOI: 10.1101/2023.08.03.551733 |
0.449 |
|
| 2023 |
Wang W, Hariharan M, Bartlett A, Barragan C, Castanon R, Rothenberg V, Song H, Nery J, Aldridge A, Altshul J, Kenworthy M, Ding W, Liu H, Tian W, Zhou J, et al. Human Immune Cell Epigenomic Signatures in Response to Infectious Diseases and Chemical Exposures. Biorxiv : the Preprint Server For Biology. PMID 37425926 DOI: 10.1101/2023.06.29.546792 |
0.769 |
|
| 2023 |
Liu H, Zeng Q, Zhou J, Bartlett A, Wang BA, Berube P, Tian W, Kenworthy M, Altshul J, Nery JR, Chen H, Castanon RG, Zu S, Li YE, Lucero J, et al. Single-cell DNA Methylome and 3D Multi-omic Atlas of the Adult Mouse Brain. Biorxiv : the Preprint Server For Biology. PMID 37131654 DOI: 10.1101/2023.04.16.536509 |
0.742 |
|
| 2023 |
Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, et al. Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex. Biorxiv : the Preprint Server For Biology. PMID 37066152 DOI: 10.1101/2023.04.08.536119 |
0.792 |
|
| 2022 |
Shu H, Ding F, Zhou J, Xue Y, Zhao D, Zeng J, Ma J. Boosting single-cell gene regulatory network reconstruction via bulk-cell transcriptomic data. Briefings in Bioinformatics. 23. PMID 36070863 DOI: 10.1093/bib/bbac389 |
0.355 |
|
| 2022 |
Luo C, Liu H, Xie F, Armand EJ, Siletti K, Bakken TE, Fang R, Doyle WI, Stuart T, Hodge RD, Hu L, Wang BA, Zhang Z, Preissl S, Lee DS, ... Zhou J, et al. Single nucleus multi-omics identifies human cortical cell regulatory genome diversity. Cell Genomics. 2. PMID 35419551 DOI: 10.1016/j.xgen.2022.100107 |
0.752 |
|
| 2021 |
Shu H, Zhou J, Lian Q, Li H, Zhao D, Zeng J, Ma J. Modeling gene regulatory networks using neural network architectures. Nature Computational Science. 1: 491-501. PMID 38217125 DOI: 10.1038/s43588-021-00099-8 |
0.32 |
|
| 2021 |
Zhang Z, Zhou J, Tan P, Pang Y, Rivkin AC, Kirchgessner MA, Williams E, Lee CT, Liu H, Franklin AD, Miyazaki PA, Bartlett A, Aldridge AI, Vu M, Boggeman L, et al. Epigenomic diversity of cortical projection neurons in the mouse brain. Nature. 598: 167-173. PMID 34616065 DOI: 10.1038/s41586-021-03223-w |
0.731 |
|
| 2021 |
Liu H, Zhou J, Tian W, Luo C, Bartlett A, Aldridge A, Lucero J, Osteen JK, Nery JR, Chen H, Rivkin A, Castanon RG, Clock B, Li YE, Hou X, et al. DNA methylation atlas of the mouse brain at single-cell resolution. Nature. 598: 120-128. PMID 34616061 DOI: 10.1038/s41586-020-03182-8 |
0.839 |
|
| 2019 |
Lee DS, Luo C, Zhou J, Chandran S, Rivkin A, Bartlett A, Nery JR, Fitzpatrick C, O'Connor C, Dixon JR, Ecker JR. Simultaneous profiling of 3D genome structure and DNA methylation in single human cells. Nature Methods. PMID 31501549 DOI: 10.1038/S41592-019-0547-Z |
0.817 |
|
| 2019 |
Zhou J, Ma J, Chen Y, Cheng C, Bao B, Peng J, Sejnowski TJ, Dixon JR, Ecker JR. Robust single-cell Hi-C clustering by convolution- and random-walk-based imputation. Proceedings of the National Academy of Sciences of the United States of America. PMID 31235599 DOI: 10.1073/Pnas.1901423116 |
0.555 |
|
| 2018 |
Luo C, Rivkin A, Zhou J, Sandoval JP, Kurihara L, Lucero J, Castanon R, Nery JR, Pinto-Duarte A, Bui B, Fitzpatrick C, O'Connor C, Ruga S, Van Eden ME, Davis DA, et al. Robust single-cell DNA methylome profiling with snmC-seq2. Nature Communications. 9: 3824. PMID 30237449 DOI: 10.1038/S41467-018-06355-2 |
0.748 |
|
| 2017 |
Luo C, Keown CL, Kurihara L, Zhou J, He Y, Li J, Castanon R, Lucero J, Nery JR, Sandoval JP, Bui B, Sejnowski TJ, Harkins TT, Mukamel EA, Behrens MM, et al. Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex. Science (New York, N.Y.). 357: 600-604. PMID 28798132 DOI: 10.1126/Science.Aan3351 |
0.824 |
|
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