Stefan Stoll, Ph.D. - Publications

Affiliations: 
2011- chemistry University of Washington, Seattle, Seattle, WA 
Area:
EPR
Website:
http://depts.washington.edu/chem/people/faculty/stoll.html

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Denysenkov V, Prisner TF, Neugebauer P, Stoll S, Marko A. Macroscopic sample shape effect on pulse electron double resonance (PELDOR) signal. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 356: 107564. PMID 37852111 DOI: 10.1016/j.jmr.2023.107564  0.3
2022 Fábregas-Ibáñez L, Mertens V, Ritsch I, von Hagens T, Stoll S, Jeschke G. Dipolar pathways in multi-spin and multi-dimensional dipolar EPR spectroscopy. Physical Chemistry Chemical Physics : Pccp. 24: 22645-22660. PMID 36106486 DOI: 10.1039/d2cp03048a  0.535
2022 Fábregas-Ibáñez L, Jeschke G, Stoll S. Compactness regularization in the analysis of dipolar EPR spectroscopy data. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 339: 107218. PMID 35439683 DOI: 10.1016/j.jmr.2022.107218  0.498
2022 Fábregas-Ibáñez L, Tessmer MH, Jeschke G, Stoll S. Dipolar pathways in dipolar EPR spectroscopy. Physical Chemistry Chemical Physics : Pccp. PMID 35023519 DOI: 10.1039/d1cp03305k  0.517
2021 Bahrenberg T, Jahn SM, Feintuch A, Stoll S, Goldfarb D. The decay of the refocused Hahn echo in double electron-electron resonance (DEER) experiments. Magnetic Resonance (Gottingen, Germany). 2: 161-173. PMID 37904783 DOI: 10.5194/mr-2-161-2021  0.3
2021 Schiemann O, Heubach CA, Abdullin D, Ackermann K, Azarkh M, Bagryanskaya EG, Drescher M, Endeward B, Freed JH, Galazzo L, Goldfarb D, Hett T, Esteban Hofer L, Fábregas Ibáñez L, Hustedt EJ, ... ... Stoll S, et al. Benchmark Test and Guidelines for DEER/PELDOR Experiments on Nitroxide-Labeled Biomolecules. Journal of the American Chemical Society. PMID 34664948 DOI: 10.1021/jacs.1c07371  0.494
2021 Pribitzer S, Mannikko D, Stoll S. Determining electron-nucleus distances and Fermi contact couplings from ENDOR spectra. Physical Chemistry Chemical Physics : Pccp. 23: 8326-8335. PMID 33875997 DOI: 10.1039/d1cp00229e  0.312
2020 Fábregas Ibáñez L, Jeschke G, Stoll S. DeerLab: a comprehensive software package for analyzing dipolar electron paramagnetic resonance spectroscopy data. Magnetic Resonance (Gottingen, Germany). 1: 209-224. PMID 34568875 DOI: 10.5194/mr-1-209-2020  0.487
2020 Lehner J, Stoll S. Modeling of motional EPR spectra using hindered Brownian rotational diffusion and the stochastic Liouville equation. The Journal of Chemical Physics. 152: 094103. PMID 33480723 DOI: 10.1063/1.5139935  0.36
2020 Sweger SR, Pribitzer S, Stoll S. Bayesian Probabilistic Aanalysis of DEER Spectroscopy Data Using Parametric Distance Distribution Models. The Journal of Physical Chemistry. A. PMID 32614584 DOI: 10.1021/Acs.Jpca.0C05026  0.35
2020 Canarie ER, Jahn SM, Stoll S. Quantitative Structure-Based Prediction of Electron Spin Decoherence in Organic Radicals. The Journal of Physical Chemistry Letters. 11: 3396-3400. PMID 32282218 DOI: 10.1021/Acs.Jpclett.0C00768  0.391
2019 Martin PD, Svensson B, Thomas DD, Stoll S. Trajectory-Based Simulation of EPR Spectra: Models of Rotational Motion for Spin Labels on Proteins. The Journal of Physical Chemistry. B. PMID 31693365 DOI: 10.1021/Acs.Jpcb.9B02693  0.336
2019 Mannikko D, Stoll S. Vanadyl Porphyrin Speciation Based on Submegahertz Ligand Proton Hyperfine Couplings Energy & Fuels. 33: 4237-4243. DOI: 10.1021/Acs.Energyfuels.9B00867  0.36
2018 Nehrkorn J, Veber SL, Zhukas LA, Novikov VV, Nelyubina YV, Voloshin YZ, Holldack K, Stoll S, Schnegg A. Determination of Large Zero-Field Splitting in High-Spin Co(I) Clathrochelates. Inorganic Chemistry. PMID 30495930 DOI: 10.1021/Acs.Inorgchem.8B02670  0.321
2018 Edwards TH, Stoll S. Optimal Tikhonov regularization for DEER spectroscopy. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 288: 58-68. PMID 29414064 DOI: 10.1016/J.Jmr.2018.01.021  0.613
2018 Martin P, Stoll S, Thomas D. Trajectory-Based Simulations of Electron Paramagnetic Resonance Spectra Biophysical Journal. 114: 159a. DOI: 10.1016/J.Bpj.2017.11.892  0.371
2018 Edwards TH, Stoll S. Identifying the Optimal Level of Regularization in Deer Data Analysis Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.887  0.549
2018 Kumar P, Edwards TH, Stoll S, Huber M. The Conformation of Alpha-Synuclein on the Natural Membrane Mimics Inner Mitochondrial Membrane (IMM) and Neuronal Plasma Membrane (NPM) Revisited by Bayesian Analysis of Double Electron Electron Resonance (DEER) Distance Distributions Biophysical Journal. 114: 559a-560a. DOI: 10.1016/J.Bpj.2017.11.3061  0.585
2017 Collauto A, DeBerg HA, Kaufmann R, Zagotta WN, Stoll S, Goldfarb D. Rates and equilibrium constants of the ligand-induced conformational transition of an HCN ion channel protein domain determined by DEER spectroscopy. Physical Chemistry Chemical Physics : Pccp. PMID 28569901 DOI: 10.1039/C7Cp01925D  0.31
2017 Tait CE, Stoll S. ENDOR with band-selective shaped inversion pulses. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 277: 36-44. PMID 28222392 DOI: 10.1016/J.Jmr.2017.02.007  0.352
2017 Martin P, Stoll S, Thomas D. Simulating Electron Paramagnetic Resonance Spectra of Slow-Motion Systems in the Time Domain Biophysical Journal. 112: 445a-446a. DOI: 10.1016/J.Bpj.2016.11.2388  0.377
2016 Edwards TH, Stoll S. A Bayesian approach to quantifying uncertainty from experimental noise in DEER spectroscopy. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 270: 87-97. PMID 27414762 DOI: 10.1016/J.Jmr.2016.06.021  0.626
2016 Tait CE, Stoll S. Coherent pump pulses in Double Electron Electron Resonance spectroscopy. Physical Chemistry Chemical Physics : Pccp. PMID 27339858 DOI: 10.1039/C6Cp03555H  0.384
2016 Hayes EC, Porter TR, Barrows CJ, Kaminsky W, Mayer JM, Stoll S. Electronic Structure of a Cu(II)-Alkoxide Complex Modeling Intermediates in Copper-Catalyzed Alcohol Oxidations. Journal of the American Chemical Society. PMID 26907976 DOI: 10.1021/Jacs.5B13088  0.318
2016 Edwards TH, Stoll S. Bayesian Statistical Methods in the Analysis of DEER Data Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.859  0.644
2015 Stoll S. CW-EPR Spectral Simulations: Solid State. Methods in Enzymology. 563: 121-42. PMID 26478484 DOI: 10.1016/Bs.Mie.2015.06.003  0.308
2015 Welker EA, Tiley BL, Sasaran CM, Zuchero MA, Tong WS, Vettleson MJ, Richards RA, Geruntho JJ, Stoll S, Wolbach JP, Rhile IJ. Conformational Change with Steric Interactions Affects the Inner Sphere Component of Concerted Proton-Electron Transfer in a Pyridyl-Appended Radical Cation System. The Journal of Organic Chemistry. 80: 8705-12. PMID 26270193 DOI: 10.1021/Acs.Joc.5B01427  0.376
2015 Nehrkorn J, Telser J, Holldack K, Stoll S, Schnegg A. Simulating Frequency-Domain EPR: Bridging the Gap between Experiment and Magnetic Parameters for High-Spin Transition Metal Ion Complexes. The Journal of Physical Chemistry. B. PMID 26154490 DOI: 10.1021/Acs.Jpcb.5B04156  0.382
2015 Nehrkorn J, Schnegg A, Holldack K, Stoll S. General magnetic transition dipole moments for electron paramagnetic resonance. Physical Review Letters. 114: 010801. PMID 25615456 DOI: 10.1103/Physrevlett.114.010801  0.377
2015 Edwards TH, Stoll S. Uncertainty Quantification in Deer Spectroscopy using Bayesian Statistical Inversion Methods Biophysical Journal. 108: 616a. DOI: 10.1016/J.Bpj.2014.11.3353  0.651
2015 DeBerg HA, Islam SM, Puljung MC, Roux B, Zagotta WN, Stoll S. Allosteric Regulation of the Cyclic Nucleotide-Binding Domain in HCN Channels Biophysical Journal. 108: 192a-193a. DOI: 10.1016/J.Bpj.2014.11.1064  0.315
2014 Puljung MC, DeBerg HA, Zagotta WN, Stoll S. Double electron-electron resonance reveals cAMP-induced conformational change in HCN channels. Proceedings of the National Academy of Sciences of the United States of America. 111: 9816-21. PMID 24958877 DOI: 10.1073/Pnas.1405371111  0.345
2014 DeBerg HA, Puljung MC, Zagotta WN, Stoll S. Double Electron-Electron Resonance Studies of Ligand Induced Rearrangements of HCN Channels Biophysical Journal. 106: 737a. DOI: 10.1016/J.Bpj.2013.11.4062  0.34
2013 Khabuanchalad S, Wittayakun J, Lobo-Lapidus RJ, Stoll S, Britt RD, Gates BC. Formation of MgO-supported manganese carbonyl complexes by chemisorption of Mn(CO)5CH3. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 6279-86. PMID 23679854 DOI: 10.1021/La303269H  0.494
2013 Yang L, Nelson RS, Benjdia A, Lin G, Telser J, Stoll S, Schlichting I, Li L. A radical transfer pathway in spore photoproduct lyase. Biochemistry. 52: 3041-50. PMID 23607538 DOI: 10.1021/Bi3016247  0.319
2013 Zalibera M, Jalilov AS, Stoll S, Guzei IA, Gescheidt G, Nelsen SF. Monotrimethylene-bridged bis-p-phenylenediamine radical cations and dications: spin states, conformations, and dynamics. The Journal of Physical Chemistry. A. 117: 1439-48. PMID 23339358 DOI: 10.1021/Jp3104358  0.315
2013 Nehrkorn J, Martins BM, Holldack K, Stoll S, Dobbek H, Bittl R, Schnegg A. Zero-field splittings in metHb and metMb with aquo and fluoro ligands: A FD-FT THz-EPR study Molecular Physics. 111: 2696-2707. DOI: 10.1080/00268976.2013.809806  0.341
2013 Puljung MC, Zagotta WN, Stoll S. Spectroscopic Investigation of Agonist-Induced Rearrangements of Cyclic Nucleotide-Modulated Ion Channels Biophysical Journal. 104: 271a. DOI: 10.1016/J.Bpj.2012.11.1519  0.303
2012 Stoll S, Lee YT, Zhang M, Wilson RF, Britt RD, Goodin DB. Double electron-electron resonance shows cytochrome P450cam undergoes a conformational change in solution upon binding substrate. Proceedings of the National Academy of Sciences of the United States of America. 109: 12888-93. PMID 22826259 DOI: 10.1073/Pnas.1207123109  0.566
2011 Stoll S, Shafaat HS, Krzystek J, Ozarowski A, Tauber MJ, Kim JE, Britt RD. Hydrogen bonding of tryptophan radicals revealed by EPR at 700 GHz. Journal of the American Chemical Society. 133: 18098-101. PMID 22007694 DOI: 10.1021/Ja208462T  0.526
2011 Taylor AM, Stoll S, Britt RD, Jarrett JT. Reduction of the [2Fe-2S] cluster accompanies formation of the intermediate 9-mercaptodethiobiotin in Escherichia coli biotin synthase. Biochemistry. 50: 7953-63. PMID 21859080 DOI: 10.1021/Bi201042R  0.539
2011 Myers TW, Kazem N, Stoll S, Britt RD, Shanmugam M, Berben LA. A redox series of aluminum complexes: characterization of four oxidation states including a ligand biradical state stabilized via exchange coupling. Journal of the American Chemical Society. 133: 8662-72. PMID 21568319 DOI: 10.1021/Ja2015718  0.505
2010 Stoll S, Ozarowski A, Britt RD, Angerhofer A. Atomic hydrogen as high-precision field standard for high-field EPR. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 207: 158-63. PMID 20813570 DOI: 10.1016/J.Jmr.2010.08.006  0.483
2010 Wecksler SR, Stoll S, Iavarone AT, Imsand EM, Tran H, Britt RD, Klinman JP. Interaction of PqqE and PqqD in the pyrroloquinoline quinone (PQQ) biosynthetic pathway links PqqD to the radical SAM superfamily. Chemical Communications (Cambridge, England). 46: 7031-3. PMID 20737074 DOI: 10.1039/C0Cc00968G  0.51
2010 Stoll S, NejatyJahromy Y, Woodward JJ, Ozarowski A, Marletta MA, Britt RD. Nitric oxide synthase stabilizes the tetrahydrobiopterin cofactor radical by controlling its protonation state. Journal of the American Chemical Society. 132: 11812-23. PMID 20669954 DOI: 10.1021/Ja105372S  0.553
2010 Kohler AC, Gae DD, Richley MA, Stoll S, Gunn A, Lim S, Martin SS, Doukov TI, Britt RD, Ames JB, Lagarias JC, Fisher AJ. Structural basis for hydration dynamics in radical stabilization of bilin reductase mutants. Biochemistry. 49: 6206-18. PMID 20557110 DOI: 10.1021/Bi100728Q  0.658
2010 Dicus MM, Conlan A, Nechushtai R, Jennings PA, Paddock ML, Britt RD, Stoll S. Binding of histidine in the (Cys)3(His)1-coordinated [2Fe-2S] cluster of human mitoNEET. Journal of the American Chemical Society. 132: 2037-49. PMID 20099820 DOI: 10.1021/Ja909359G  0.722
2010 Khabuanchalad S, Wittayakun J, Lobo-Lapidus RJ, Stoll S, Britt RD, Gates BC. Formation of a manganese tricarbonyl on the MgO surface from Mn 2(CO)10: Characterization by infrared, electron paramagnetic resonance, and X-ray absorption spectroscopies Journal of Physical Chemistry C. 114: 17212-17221. DOI: 10.1021/Jp104205Q  0.489
2010 DeRose VJ, Kim N, Bowman MK, Green B, Unger A, Stoll S, Britt RD. Accurate Distance Constraints for RNA Structures Using Deer Spectroscopy Biophysical Journal. 98: 264a. DOI: 10.1016/J.Bpj.2009.12.1437  0.483
2009 Agapie T, Suseno S, Woodward JJ, Stoll S, Britt RD, Marletta MA. NO formation by a catalytically self-sufficient bacterial nitric oxide synthase from Sorangium cellulosum. Proceedings of the National Academy of Sciences of the United States of America. 106: 16221-6. PMID 19805284 DOI: 10.1073/Pnas.0908443106  0.484
2009 Wecksler SR, Stoll S, Tran H, Magnusson OT, Wu SP, King D, Britt RD, Klinman JP. Pyrroloquinoline quinone biogenesis: Demonstration that PqqE from Klebsiella pneumoniae is a radical S-adenosyl-L-methionine enzyme Biochemistry. 48: 10151-10161. PMID 19746930 DOI: 10.1021/Bi900918B  0.509
2009 Stoll S, Britt RD. General and efficient simulation of pulse EPR spectra Physical Chemistry Chemical Physics. 11: 6614-6625. PMID 19639136 DOI: 10.1039/B907277B  0.574
2009 Stoll S, Gunn A, Brynda M, Sughrue W, Kohler AC, Ozarowski A, Fisher AJ, Lagarias JC, Britt RD. Structure of the biliverdin radical intermediate in phycocyanobilin:ferredoxin oxidoreductase identified by high-field EPR and DFT. Journal of the American Chemical Society. 131: 1986-95. PMID 19159240 DOI: 10.1021/Ja808573F  0.682
2008 Morton JJ, Lees NS, Hoffman BM, Stoll S. Nuclear relaxation effects in Davies ENDOR variants. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 191: 315-21. PMID 18258463 DOI: 10.1016/J.Jmr.2008.01.006  0.356
2008 Kasumaj B, Stoll S. 5- and 6-pulse electron spin echo envelope modulation (ESEEM) of multi-nuclear spin systems Journal of Magnetic Resonance. 190: 233-247. PMID 18035567 DOI: 10.1016/J.Jmr.2007.11.001  0.325
2008 Stoll S, Kasumaj B. Phase cycling in electron spin echo envelope modulation Applied Magnetic Resonance. 35: 15-32. DOI: 10.1007/S00723-008-0140-6  0.317
2007 Stoll S, Epel B, Vega S, Goldfarb D. Ligand protons in a frozen solution of copper histidine relax via a T 1e-driven three-spin mechanism Journal of Chemical Physics. 127. DOI: 10.1063/1.2794329  0.396
2006 Finazzo C, Calle C, Stoll S, Van Doorslaer S, Schweiger A. Matrix effects on copper(II)phthalocyanine complexes. A combined continuous wave and pulse EPR and DFT study. Physical Chemistry Chemical Physics : Pccp. 8: 1942-53. PMID 16633682 DOI: 10.1039/B516184C  0.57
2006 Stoll S, Schweiger A. EasySpin, a comprehensive software package for spectral simulation and analysis in EPR. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 178: 42-55. PMID 16188474 DOI: 10.1016/J.Jmr.2005.08.013  0.553
2006 Calle C, Sreekanth A, Fedin MV, Forrer J, Garcia-Rubio I, Gromov IA, Hinderberger D, Kasumaj B, Léger P, Mancosu B, Mitrikas G, Santangelo MG, Stoll S, Schweiger A, Tschaggelar R, et al. Pulse EPR methods for studying chemical and biological samples containing transition metals Helvetica Chimica Acta. 89: 2495-2521. DOI: 10.1002/Hlca.200690229  0.582
2006 Jeschke G, Stoll S. Arthur Schweiger (1946–2006) Angewandte Chemie. 118: 1530-1531. DOI: 10.1002/Ange.200600428  0.412
2005 Stoll S, Calle C, Mitrikas G, Schweiger A. Peak suppression in ESEEM spectra of multinuclear spin systems. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 177: 93-101. PMID 16112885 DOI: 10.1016/J.Jmr.2005.07.012  0.558
2005 Epel B, Gromov I, Stoll S, Schweiger A, Goldfarb D. Spectrometer manager: A versatile control software for pulse EPR spectrometers Concepts in Magnetic Resonance Part B: Magnetic Resonance Engineering. 26: 36-45. DOI: 10.1002/Cmr.B.20037  0.497
2003 Stoll S, Schweiger A. Rapid construction of solid-state magnetic resonance powder spectra from frequencies and amplitudes as applied to ESEEM. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 163: 248-56. PMID 12914840 DOI: 10.1016/S1090-7807(03)00120-4  0.548
2003 Stoll S, Schweiger A. Erratum to: ‘An adaptive method for computing resonance fields for continuous-wave EPR spectra’ [Chem. Phys. Lett. 380 (2003) 464–470] Chemical Physics Letters. 382: 216. DOI: 10.1016/J.Cplett.2003.10.086  0.502
2003 Stoll S, Schweiger A. An adaptive method for computing resonance fields for continuous-wave EPR spectra Chemical Physics Letters. 380: 464-470. DOI: 10.1016/J.Cplett.2003.09.043  0.545
2001 Van Doorslaer S, Shane JJ, Stoll S, Schweiger A, Kranenburg M, Meier RJ. Continuous wave and pulse EPR as a tool for the characterization of monocyclopentadienyl Ti(III) catalysts Journal of Organometallic Chemistry. 634: 185-192. DOI: 10.1016/S0022-328X(01)01160-3  0.538
2001 Calle C, Eichel RA, Finazzo C, Forrer J, Granwehr J, Gromov I, Groth W, Harmer J, Kälin M, Lämmler W, Liesum L, Mádi Z, Stoll S, Van Doorslaer S, Schweiger A. Electron paramagnetic resonance spectroscopy Chimia. 55: 763-766.  0.52
1998 Stoll S, Jeschke G, Willer M, Schweiger A. Nutation-Frequency Correlated EPR Spectroscopy: The PEANUT Experiment Journal of Magnetic Resonance (San Diego, Calif. : 1997). 130: 86-96. PMID 9469902 DOI: 10.1006/Jmre.1997.1285  0.65
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