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Rajamanickam Murugan - Publications

Affiliations: 
Indian Institute of Technology Madras, Chennai, Tamil Nadu, India 
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Murugan R, Kreiman G. Multiple transcription auto regulatory loops can act as robust oscillators and decision-making motifs. Computational and Structural Biotechnology Journal. 20: 5115-5135. PMID 36187915 DOI: 10.1016/j.csbj.2022.08.065  0.539
2020 Murugan R. Theory on the looping mediated directional-dependent propulsion of transcription factors along DNA Journal of Statistical Mechanics: Theory and Experiment. 2020: 13501. DOI: 10.1088/1742-5468/Ab632D  0.327
2018 Murugan R. Theory of Site-Specific DNA-Protein Interactions in the Presence of Nucleosome Roadblocks. Biophysical Journal. 114: 2516-2529. PMID 29874603 DOI: 10.1016/J.Bpj.2018.04.039  0.383
2017 Murugan R. Theory on the rate equation of Michaelis–Menten type single-substrate enzyme catalyzed reactions Journal of Mathematical Chemistry. 56: 508-556. DOI: 10.1007/S10910-017-0791-3  0.306
2016 Niranjani G, Murugan R. Theory on the mechanism of site-specific DNA-protein interactions in the presence of traps. Physical Biology. 13: 046003. PMID 27434174 DOI: 10.1088/1478-3975/13/4/046003  0.352
2016 Niranjani G, Murugan R. Theory on the Mechanism of DNA Renaturation: Stochastic Nucleation and Zipping. Plos One. 11: e0153172. PMID 27074030 DOI: 10.1371/Journal.Pone.0153172  0.34
2016 Niranjani G, Murugan R. Generalized theory on the mechanism of site-specific DNA–protein interactions Journal of Statistical Mechanics: Theory and Experiment. 2016: 053501. DOI: 10.1088/1742-5468/2016/05/053501  0.394
2012 Murugan R, Kreiman G. Theory on the coupled stochastic dynamics of transcription and splice-site recognition. Plos Computational Biology. 8: e1002747. PMID 23133354 DOI: 10.1371/Journal.Pcbi.1002747  0.592
2012 Murugan R. Theory on the dynamics of feedforward loops in the transcription factor networks. Plos One. 7: e41027. PMID 22911735 DOI: 10.1371/Journal.Pone.0041027  0.314
2011 Murugan R, Kreiman G. On the minimization of fluctuations in the response times of autoregulatory gene networks. Biophysical Journal. 101: 1297-306. PMID 21943410 DOI: 10.1016/J.Bpj.2011.08.005  0.59
2011 Murugan R. Theory on the dynamic memory in the transcription-factor-mediated transcription activation Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 83. DOI: 10.1103/Physreve.83.041926  0.345
2011 Murugan R. Theory on thermodynamic coupling of site-specific DNA-protein interactions with fluctuations in DNA-binding domains Journal of Physics a: Mathematical and Theoretical. 44. DOI: 10.1088/1751-8113/44/50/505002  0.363
2010 Murugan R. Theory of site-Specific DNA-Protein interactions in the presence of conformational fluctuations of DNA binding domains Biophysical Journal. 99: 353-359. PMID 20643052 DOI: 10.1016/J.Bpj.2010.04.026  0.356
2010 Murugan R. Theory on the mechanism of distal action of transcription factors: Looping of DNA versus tracking along DNA Journal of Physics a: Mathematical and Theoretical. 43. DOI: 10.1088/1751-8113/43/41/415002  0.333
2010 Murugan R. Theory of site-specific interactions of the combinatorial transcription factors with DNA Journal of Physics a: Mathematical and Theoretical. 43. DOI: 10.1088/1751-8113/43/19/195003  0.351
2009 Murugan R. Packaging effects on site-specific DNA-protein interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 061920. PMID 19658537 DOI: 10.1103/Physreve.79.061920  0.357
2009 Murugan R. Directional dependent dynamics of protein molecules on DNA. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 041913. PMID 19518262 DOI: 10.1103/Physreve.79.041913  0.355
2008 Murugan R. Multiple stochastic point processes in gene expression Journal of Statistical Physics. 131: 153-165. DOI: 10.1007/S10955-008-9484-4  0.369
2007 Murugan R. Action at distance along the DNA: a random jump model on enhancer action. Journal of Theoretical Biology. 248: 696-705. PMID 17673258 DOI: 10.1016/J.Jtbi.2007.06.003  0.31
2007 Murugan R. Generalized theory of site-specific DNA-protein interactions Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 76. DOI: 10.1103/Physreve.76.011901  0.351
2006 Murugan R, Mazumdar S. Effect of alcohols on binding of camphor to cytochrome P450cam: Spectroscopic and stopped flow transient kinetic studies Archives of Biochemistry and Biophysics. 455: 154-162. PMID 17049478 DOI: 10.1016/J.Abb.2006.09.007  0.551
2006 Murugan R. Effect of external fluctuations on the affinity-specificity negative correlation in DNA-probe interactions Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 73. PMID 16802975 DOI: 10.1103/Physreve.73.051915  0.345
2006 Murugan R. Stochastic transcription initiation: Time dependent transcription rates Biophysical Chemistry. 121: 51-56. PMID 16442697 DOI: 10.1016/J.Bpc.2005.12.010  0.347
2006 Murugan R. Critical jump sizes in DNA-protein interactions Biophysical Chemistry. 120: 143-147. PMID 16324783 DOI: 10.1016/J.Bpc.2005.10.014  0.363
2005 Prasad S, Murugan R, Mitra S. An artificial electron donor supported catalytic cycle of Pseudomonas putida cytochrome P450cam. Biochemical and Biophysical Research Communications. 335: 590-5. PMID 16084834 DOI: 10.1016/J.Bbrc.2005.07.118  0.564
2005 Murugan R. On the origin of affinity-specificity negative correlation in DNA-probe interactions Biophysical Chemistry. 116: 105-109. PMID 15950822 DOI: 10.1016/J.Bpc.2005.01.011  0.344
2005 Murugan R, Mazumdar S. Structure and redox properties of the haem centre in the C357M mutant of cytochrome P450cam. Chembiochem : a European Journal of Chemical Biology. 6: 1204-11. PMID 15912551 DOI: 10.1002/Cbic.200400399  0.558
2004 Murugan R, Mazumdar S. Role of substrate on the conformational stability of the heme active site of cytochrome P450cam: Effect of temperature and low concentrations of denaturants Journal of Biological Inorganic Chemistry. 9: 477-488. PMID 15127248 DOI: 10.1007/S00775-004-0544-1  0.59
2004 Murugan R, Mazumdar S, Mazumdar S. A simple formalism on dynamics of proteins on potential energy landscapes. Protein Science : a Publication of the Protein Society. 13: 487-93. PMID 14739331 DOI: 10.1110/Ps.03347504  0.57
2004 Murugan R. DNA-protein interactions under random jump conditions Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 69: 119111-119117. DOI: 10.1103/Physreve.69.011911  0.361
2003 Murugan R. A theory on the origin of cooperativity in DNA renaturation kinetics Biophysical Chemistry. 106: 173-178. PMID 14556905 DOI: 10.1016/S0301-4622(03)00190-X  0.322
2003 Murugan R. A stochastic model on DNA renaturation kinetics Biophysical Chemistry. 104: 535-541. PMID 12914901 DOI: 10.1016/S0301-4622(03)00043-7  0.315
2003 Murugan R. Competitive model on denaturant-mediated protein unfolding Biophysical Journal. 84: 770-774. PMID 12547761 DOI: 10.1016/S0006-3495(03)74896-6  0.324
2003 Mazumdar S, Murugan R. Effect of camphor on the stability of heme in cytochrome P450cam: Urea mediated unfolding studies Journal of Inorganic Biochemistry. 96: 33. DOI: 10.1016/S0162-0134(03)80458-0  0.554
2002 Murugan R. Revised theory on DNA renaturation kinetics and its experimental verification Biochemical and Biophysical Research Communications. 293: 870-873. PMID 12054552 DOI: 10.1016/S0006-291X(02)00305-4  0.314
2002 Murugan R. Sample size autocorrelation analysis of kinetic data: Resolving reaction path heterogeneity Journal of Chemical Physics. 117: 6372-6377. DOI: 10.1063/1.1503335  0.302
2002 Murugan R. Solution to Michaelis-Menten enzyme kinetic equation via undetermined gauge functions: Resolving the nonlinearity of Lineweaver-Burk plot Journal of Chemical Physics. 117: 4178-4183. DOI: 10.1063/1.1496459  0.308
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