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Jingpeng Wu, Ph.D. - Publications

Affiliations: 
2014-2020 Princeton Neuroscience Institute Princeton University, Princeton, NJ 
 2020- Center for Computational neuroscience Flatiron Institute 
Area:
connectome
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dorkenwald S, Schneider-Mizell CM, Brittain D, Halageri A, Jordan C, Kemnitz N, Castro MA, Silversmith W, Maitin-Shephard J, Troidl J, Pfister H, Gillet V, Xenes D, Bae JA, Bodor AL, ... ... Wu J, et al. CAVE: Connectome Annotation Versioning Engine. Biorxiv : the Preprint Server For Biology. PMID 37546753 DOI: 10.1101/2023.07.26.550598  0.652
2023 Dorkenwald S, Matsliah A, Sterling AR, Schlegel P, Yu SC, McKellar CE, Lin A, Costa M, Eichler K, Yin Y, Silversmith W, Schneider-Mizell C, Jordan CS, Brittain D, Halageri A, ... ... Wu J, et al. Neuronal wiring diagram of an adult brain. Biorxiv : the Preprint Server For Biology. PMID 37425937 DOI: 10.1101/2023.06.27.546656  0.721
2023 Yang R, Vishwanathan A, Wu J, Kemnitz N, Ih D, Turner N, Lee K, Tartavull I, Silversmith WM, Jordan CS, David C, Bland D, Sterling A, Goldman MS, Aksay ERF, et al. Cyclic structure with cellular precision in a vertebrate sensorimotor neural circuit. Current Biology : Cb. PMID 37236180 DOI: 10.1016/j.cub.2023.05.010  0.735
2023 Ding Z, Fahey PG, Papadopoulos S, Wang E, Celii B, Papadopoulos C, Kunin AB, Chang A, Fu J, Ding Z, Patel S, Ponder K, Bae JA, Bodor AL, Brittain D, ... ... Wu J, et al. Functional connectomics reveals general wiring rule in mouse visual cortex. Biorxiv : the Preprint Server For Biology. PMID 36993398 DOI: 10.1101/2023.03.13.531369  0.71
2023 Celii B, Papadopoulos S, Ding Z, Fahey PG, Wang E, Papadopoulos C, Kunin AB, Patel S, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, ... ... Wu J, et al. NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions. Biorxiv : the Preprint Server For Biology. PMID 36993282 DOI: 10.1101/2023.03.14.532674  0.651
2023 Schneider-Mizell CM, Bodor A, Brittain D, Buchanan J, Bumbarger DJ, Elabbady L, Kapner D, Kinn S, Mahalingam G, Seshamani S, Suckow S, Takeno M, Torres R, Yin W, Dorkenwald S, ... ... Wu J, et al. Cell-type-specific inhibitory circuitry from a connectomic census of mouse visual cortex. Biorxiv : the Preprint Server For Biology. PMID 36747710 DOI: 10.1101/2023.01.23.525290  0.714
2022 Silversmith W, Zlateski A, Bae JA, Tartavull I, Kemnitz N, Wu J, Seung HS. Igneous: Distributed dense 3D segmentation meshing, neuron skeletonization, and hierarchical downsampling. Frontiers in Neural Circuits. 16: 977700. PMID 36506593 DOI: 10.3389/fncir.2022.977700  0.569
2022 Buchanan J, Elabbady L, Collman F, Jorstad NL, Bakken TE, Ott C, Glatzer J, Bleckert AA, Bodor AL, Brittain D, Bumbarger DJ, Mahalingam G, Seshamani S, Schneider-Mizell C, Takeno MM, ... ... Wu J, et al. Oligodendrocyte precursor cells ingest axons in the mouse neocortex. Proceedings of the National Academy of Sciences of the United States of America. 119: e2202580119. PMID 36417438 DOI: 10.1073/pnas.2202580119  0.694
2022 Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Kemnitz N, Silversmith WM, Ih D, Zung J, Zlateski A, Tartavull I, et al. Binary and analog variation of synapses between cortical pyramidal neurons. Elife. 11. PMID 36382887 DOI: 10.7554/eLife.76120  0.697
2022 Wu J, Turner N, Bae JA, Vishwanathan A, Seung HS. RealNeuralNetworks.jl: An Integrated Julia Package for Skeletonization, Morphological Analysis, and Synaptic Connectivity Analysis of Terabyte-Scale 3D Neural Segmentations. Frontiers in Neuroinformatics. 16: 828169. PMID 35311003 DOI: 10.3389/fninf.2022.828169  0.764
2022 Turner NL, Macrina T, Bae JA, Yang R, Wilson AM, Schneider-Mizell C, Lee K, Lu R, Wu J, Bodor AL, Bleckert AA, Brittain D, Froudarakis E, Dorkenwald S, Collman F, et al. Reconstruction of neocortex: Organelles, compartments, cells, circuits, and activity. Cell. PMID 35216674 DOI: 10.1016/j.cell.2022.01.023  0.712
2021 Dorkenwald S, McKellar CE, Macrina T, Kemnitz N, Lee K, Lu R, Wu J, Popovych S, Mitchell E, Nehoran B, Jia Z, Bae JA, Mu S, Ih D, Castro M, et al. FlyWire: online community for whole-brain connectomics. Nature Methods. PMID 34949809 DOI: 10.1038/s41592-021-01330-0  0.692
2021 Schneider-Mizell CM, Bodor AL, Collman F, Brittain D, Bleckert A, Dorkenwald S, Turner NL, Macrina T, Lee K, Lu R, Wu J, Zhuang J, Nandi A, Hu B, Buchanan J, et al. Structure and function of axo-axonic inhibition. Elife. 10. PMID 34851292 DOI: 10.7554/eLife.73783  0.715
2021 Wu J, Silversmith WM, Lee K, Seung HS. Chunkflow: hybrid cloud processing of large 3D images by convolutional nets. Nature Methods. PMID 33750934 DOI: 10.1038/s41592-021-01088-5  0.626
2020 Deutsch DS, Pacheco DA, Encarnacion-Rivera L, Pereira TD, Fathy R, Clemens J, Girardin C, Calhoun AJ, Ireland EC, Burke AT, Dorkenwald S, McKellar CE, Macrina T, Lu R, Lee K, ... ... Wu J, et al. The neural basis for a persistent internal state in females. Elife. 9. PMID 33225998 DOI: 10.7554/eLife.59502  0.685
2019 Lee K, Turner N, Macrina T, Wu J, Lu R, Seung HS. Convolutional nets for reconstructing neural circuits from brain images acquired by serial section electron microscopy. Current Opinion in Neurobiology. 55: 188-198. PMID 31071619 DOI: 10.1016/J.Conb.2019.04.001  0.714
2016 Wu J, Guo C, Chen S, Jiang T, He Y, Ding W, Yang Z, Luo Q, Gong H. Direct 3D Analyses Reveal Barrel-Specific Vascular Distribution and Cross-Barrel Branching in the Mouse Barrel Cortex. Cerebral Cortex (New York, N.Y. : 1991). 26: 23-31. PMID 25085882 DOI: 10.1093/Cercor/Bhu166  0.503
2016 Zhang X, Song S, Wu J. Oscillations, fluctuation intensity and optimal harvesting of a bio-economic model in a complex habitat Journal of Mathematical Analysis and Applications. 436: 692-717. DOI: 10.1016/J.Jmaa.2015.11.068  0.432
2014 Wu J, He Y, Yang Z, Guo C, Luo Q, Zhou W, Chen S, Li A, Xiong B, Jiang T, Gong H. 3D BrainCV: simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution. Neuroimage. 87: 199-208. PMID 24185025 DOI: 10.1016/J.Neuroimage.2013.10.036  0.539
2013 Ming X, Li A, Wu J, Yan C, Ding W, Gong H, Zeng S, Liu Q. Rapid reconstruction of 3D neuronal morphology from light microscopy images with augmented rayburst sampling. Plos One. 8: e84557. PMID 24391966 DOI: 10.1371/Journal.Pone.0084557  0.47
2013 Ding W, Li A, Wu J, Yang Z, Meng Y, Wang S, Gong H. Automatic macroscopic density artefact removal in a Nissl-stained microscopic atlas of whole mouse brain Journal of Microscopy. 251: 168-177. PMID 23781931 DOI: 10.1111/Jmi.12058  0.375
2013 Gong H, Zeng S, Yan C, Lv X, Yang Z, Xu T, Feng Z, Ding W, Qi X, Li A, Wu J, Luo Q. Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution. Neuroimage. 74: 87-98. PMID 23416252 DOI: 10.1016/J.Neuroimage.2013.02.005  0.57
2011 Zhang B, Li A, Yang Z, Wu J, Luo Q, Gong H. Modified Golgi-Cox method for micrometer scale sectioning of the whole mouse brain. Journal of Neuroscience Methods. 197: 1-5. PMID 20959121 DOI: 10.1016/J.Jneumeth.2010.10.001  0.593
2010 Li A, Gong H, Zhang B, Wang Q, Yan C, Wu J, Liu Q, Zeng S, Luo Q. Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain. Science (New York, N.Y.). 330: 1404-8. PMID 21051596 DOI: 10.1126/Science.1191776  0.581
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