Pengfei Li - Publications

Affiliations: 
Loyola University Chicago, Chicago, IL, United States 
Area:
Computational Chemistry, Physical Chemistry, Bioinorganic Chemistry, Inorganic Chemistry

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Dan W, Li C, Li J, Li P, Xin M, Chen Z, Dang L, Yu Z, Li J, Shen J, Hu L, Sun S. Glycoproteomic analysis reveals the effects of bisecting GlcNAc in intrahepatic cholangiocarcinoma. Glycoconjugate Journal. PMID 36322335 DOI: 10.1007/s10719-022-10085-5  0.307
2022 Jia Y, Li P, Liu K, Li C, Liu M, Di J, Wang N, Yin X, Zhang N, Chen P. Expanding new chemistry of aza-boracyclophanes with unique dipolar structures, AIE and redox-active open-shell characteristics. Chemical Science. 13: 11672-11679. PMID 36320401 DOI: 10.1039/d2sc03581b  0.301
2022 Chen T, Lin Y, Wu Z, Shi H, Hu W, Li S, Que Y, Qiu J, Li P, Qiu X, Liang T, Wang X, Gao B, Zhou H, Deng Z, et al. Irisin Ameliorates Intervertebral Disc Degeneration by Activating LATS/YAP/CTGF Signaling. Oxidative Medicine and Cellular Longevity. 2022: 9684062. PMID 35915608 DOI: 10.1155/2022/9684062  0.305
2022 Chen X, Jiang L, Xia Y, Wang L, Ye J, Hou T, Zhang Y, Li M, Li Z, Song Z, Li J, Jiang Y, Li P, Zhang X, Zhang Y, et al. Quantifying on-road vehicle emissions during traffic congestion using updated emission factors of light-duty gasoline vehicles and real-world traffic monitoring big data. The Science of the Total Environment. 157581. PMID 35882317 DOI: 10.1016/j.scitotenv.2022.157581  0.338
2022 Huang L, Li M, Wei H, Yu Q, Huang S, Wang T, Liu M, Li P. Research on the indirect antiviral function of medicinal plant ingredient quercetin against grouper iridovirus infection. Fish & Shellfish Immunology. 124: 372-379. PMID 35430348 DOI: 10.1016/j.fsi.2022.04.013  0.302
2022 Xia Y, Jiang L, Wang L, Chen X, Ye J, Hou T, Wang L, Zhang Y, Li M, Li Z, Song Z, Jiang Y, Liu W, Li P, Rosenfeld D, et al. Rapid assessments of light-duty gasoline vehicle emissions using on-road remote sensing and machine learning. The Science of the Total Environment. 152771. PMID 34995595 DOI: 10.1016/j.scitotenv.2021.152771  0.351
2021 Wang Y, Li P, Rajpoot S, Saqib U, Yu P, Li Y, Li Y, Ma Z, Baig MS, Pan Q. Comparative assessment of favipiravir and remdesivir against human coronavirus NL63 in molecular docking and cell culture models. Scientific Reports. 11: 23465. PMID 34873274 DOI: 10.1038/s41598-021-02972-y  0.307
2021 Li Z, Yu S, Li M, Chen X, Zhang Y, Li J, Jiang Y, Liu W, Li P, Lichtfouse E. Non-stop industries were the main source of air pollution during the 2020 coronavirus lockdown in the North China Plain. Environmental Chemistry Letters. 1-11. PMID 34744548 DOI: 10.1007/s10311-021-01314-8  0.353
2021 Veenis AJ, Li P, Soudackov AV, Hammes-Schiffer S, Bevilacqua PC. Investigation of the p of the Nucleophilic O2' of the Hairpin Ribozyme. The Journal of Physical Chemistry. B. 125: 11869-11883. PMID 34695361 DOI: 10.1021/acs.jpcb.1c06546  0.468
2021 Sengupta A, Li Z, Song LF, Li P, Merz KM. Correction to "Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models". Journal of Chemical Information and Modeling. PMID 34180237 DOI: 10.1021/acs.jcim.1c00576  0.708
2021 Li Z, Song LF, Li P, Merz KM. Parametrization of Trivalent and Tetravalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models. Journal of Chemical Theory and Computation. PMID 33793233 DOI: 10.1021/acs.jctc.0c01320  0.388
2021 Sengupta A, Li Z, Song LF, Li P, Merz KM. Parameterization of Monovalent Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models. Journal of Chemical Information and Modeling. PMID 33538599 DOI: 10.1021/acs.jcim.0c01390  0.717
2021 Zhang Y, Chen X, Yu S, Wang L, Li Z, Li M, Liu W, Li P, Rosenfeld D, Seinfeld JH. City-level air quality improvement in the Beijing-Tianjin-Hebei region from 2016/17 to 2017/18 heating seasons: Attributions and process analysis. Environmental Pollution (Barking, Essex : 1987). 274: 116523. PMID 33508716 DOI: 10.1016/j.envpol.2021.116523  0.351
2021 Li P, Merz KM. Taking into Account the Ion-induced Dipole Interaction in the Nonbonded Model of Ions. Journal of Chemical Theory and Computation. 10: 289-297. PMID 24659926 DOI: 10.1021/ct400751u  0.321
2020 Liu D, An Z, Li P, Chen Y, Zhang R, Liu L, He J, Abliz Z. A targeted neurotransmitter quantification and nontargeted metabolic profiling method for pharmacometabolomics analysis of olanzapine by using UPLC-HRMS. Rsc Advances. 10: 18305-18314. PMID 35517196 DOI: 10.1039/d0ra02406f  0.304
2020 Li P, Wang L, Li P, Hu F, Cao Y, Tang D, Ye G, Li H, Wang D. Silencing of long non-coding RNA XIST represses gastric cancer progression through blocking NFκB pathway via inhibiting HNF4A-mediated transcription of EPHA1. Cancer Gene Therapy. PMID 33199830 DOI: 10.1038/s41417-020-00220-5  0.301
2020 Goings JJ, Li P, Zhu Q, Hammes-Schiffer S. Formation of an unusual glutamine tautomer in a blue light using flavin photocycle characterizes the light-adapted state. Proceedings of the National Academy of Sciences of the United States of America. PMID 33037153 DOI: 10.1073/pnas.2016719117  0.71
2020 Wang L, Li M, Yu S, Chen X, Li Z, Zhang Y, Jiang L, Xia Y, Li J, Liu W, Li P, Lichtfouse E, Rosenfeld D, Seinfeld JH. Unexpected rise of ozone in urban and rural areas, and sulfur dioxide in rural areas during the coronavirus city lockdown in Hangzhou, China: implications for air quality. Environmental Chemistry Letters. 1-11. PMID 32837481 DOI: 10.1007/S10311-020-01028-3  0.345
2020 Li P, Soudackov AV, Koronkiewicz B, Mayer JM, Hammes-Schiffer S. Theoretical Study of Shallow Distance Dependence of Proton-Coupled Electron Transfer in Oligoproline Peptides. Journal of the American Chemical Society. PMID 32664731 DOI: 10.1021/Jacs.0C04716  0.466
2020 Reinhardt CR, Li P, Kang G, Stubbe J, Drennan CL, Hammes-Schiffer S. Conformational Motions and Water Networks at the α/β Interface in E. coli Ribonucleotide Reductase. Journal of the American Chemical Society. PMID 32631052 DOI: 10.1021/Jacs.0C04325  0.48
2020 Li Z, Song LF, Li P, Merz KM. Systematic Parameterization of Divalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models. Journal of Chemical Theory and Computation. PMID 32510956 DOI: 10.1021/Acs.Jctc.0C00194  0.388
2020 Li P, Rangadurai A, Al-Hashimi HM, Hammes-Schiffer S. Environmental Effects on Guanine-Thymine Mispair Tautomerization Explored with Quantum Mechanical/Molecular Mechanical Free Energy Simulations. Journal of the American Chemical Society. PMID 32459476 DOI: 10.1021/Jacs.0C03774  0.465
2019 Li P, Hammes-Schiffer S. Substrate-to-Product Conversion Facilitates Active Site Loop Opening in Yeast Enolase: A Molecular Dynamics Study. Acs Catalysis. 9: 8985-8990. PMID 31853382 DOI: 10.1021/Acscatal.9B03249  0.478
2019 Yu Q, Liu M, Wei S, Xiao H, Wu S, Ke K, Huang X, Qin Q, Li P. Identification of Major Capsid Protein as a Potential Biomarker of Grouper Iridovirus-Infected Cells Using Aptamers Selected by SELEX. Frontiers in Microbiology. 10: 2684. PMID 31849862 DOI: 10.3389/fmicb.2019.02684  0.3
2018 Bi W, Bi Y, Li P, Hou S, Yan X, Hensley C, Bammert CE, Zhang Y, Gibson KM, Ju J, Bi L. Indole Alkaloid Derivative B, a Novel Bifunctional Agent That Mitigates 5-Fluorouracil-Induced Cardiotoxicity. Acs Omega. 3: 15850-15864. PMID 30533582 DOI: 10.1021/acsomega.8b02139  0.305
2018 Li P, Soudackov AV, Hammes-Schiffer S. Impact of Mutations on the Binding Pocket of Soybean Lipoxygenase: Implications for Proton-Coupled Electron Transfer. The Journal of Physical Chemistry Letters. PMID 30359035 DOI: 10.1021/Acs.Jpclett.8B02945  0.461
2018 Xu ZL, Zhang Y, Wang L, Li F, Man HW, Li PF, Shan BE. B7‑H3 promotes malignant progression of muscle‑invasive bladder cancer. Oncology Reports. PMID 30132557 DOI: 10.3892/or.2018.6655  0.305
2018 Li P, Soudackov AV, Hammes-Schiffer S. Fundamental Insights into Proton-Coupled Electron Transfer in Soybean Lipoxygenase from Quantum Mechanical/Molecular Mechanical Free Energy Simulations. Journal of the American Chemical Society. PMID 29392938 DOI: 10.1021/Jacs.7B13642  0.48
2018 Wang L, Li P, Yu S, Mehmood K, Li Z, Chang S, Liu W, Rosenfeld D, Flagan RC, Seinfeld JH. Predicted impact of thermal power generation emission control measures in the Beijing-Tianjin-Hebei region on air pollution over Beijing, China. Scientific Reports. 8: 934. PMID 29343860 DOI: 10.1038/S41598-018-19481-0  0.344
2016 Shan B, Man H, Liu J, Wang L, Zhu T, Ma M, Xv Z, Chen X, Yang X, Li P. TIM-3 promotes the metastasis of esophageal squamous cell carcinoma by targeting epithelial-mesenchymal transition via the Akt/GSK-3β/Snail signaling pathway. Oncology Reports. PMID 27430162 DOI: 10.3892/or.2016.4938  0.301
2015 Chakravorty DK, Li P, Tran TT, Bayse CA, Merz KM. Metal Ion Capture Mechanism of a Copper Metallochaperone. Biochemistry. PMID 26690586 DOI: 10.1021/Acs.Biochem.5B01217  0.733
2015 Wei J, Zhang P, Guo M, Xu M, Li P, Chen X, Gao P, Yan Y, Wei S, Qin Q. TTRAP is a critical factor in grouper immune response to virus infection. Fish & Shellfish Immunology. 46: 274-284. PMID 26172204 DOI: 10.1016/j.fsi.2015.07.006  0.305
2015 Li P, Song LF, Merz KM. Parameterization of highly charged metal ions using the 12-6-4 LJ-type nonbonded model in explicit water. The Journal of Physical Chemistry. B. 119: 883-95. PMID 25145273 DOI: 10.1021/jp505875v  0.314
2014 Wei S, Huang Y, Huang X, Cai J, Wei J, Li P, Ouyang Z, Qin Q. Molecular cloning and characterization of a new G-type lysozyme gene (Ec-lysG) in orange-spotted grouper, Epinephelus coioides. Developmental and Comparative Immunology. 46: 401-12. PMID 24877656 DOI: 10.1016/j.dci.2014.05.006  0.303
2013 Li P, Roberts BP, Chakravorty DK, Merz KM. Rational Design of Particle Mesh Ewald Compatible Lennard-Jones Parameters for +2 Metal Cations in Explicit Solvent. Journal of Chemical Theory and Computation. 9: 2733-2748. PMID 23914143 DOI: 10.1021/Ct400146W  0.739
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