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Rahul Das, PhD - Publications

Affiliations: 
University of California, Berkeley, Berkeley, CA, United States 
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Gangopadhyay K, Roy A, Chandradasan AC, Roy S, Debnath O, SenGupta S, Chowdhury S, Das D, Das R. An evolutionary divergent thermodynamic brake in ZAP-70 fine-tunes the kinetic proofreading in T cells. The Journal of Biological Chemistry. 102376. PMID 35970395 DOI: 10.1016/j.jbc.2022.102376  0.79
2022 Gangopadhyay K, Roy S, Sen Gupta S, Chandradasan AC, Chowdhury S, Das R. Regulating the discriminatory response to antigen by T-cell receptor. Bioscience Reports. 42. PMID 35260878 DOI: 10.1042/BSR20212012  0.765
2021 McNicholl ET, Das R, SilDas S, Byun JA, Akimoto M, Jafari N, Melacini G. Backbone resonance assignment of the cAMP-binding domains of the protein kinase A regulatory subunit Iα. Biomolecular Nmr Assignments. PMID 34118011 DOI: 10.1007/s12104-021-10033-8  0.801
2020 Mukherjee M, Gangopadhyay K, Das R, Purkayastha P. Development of Non-ionic Surfactant and Protein-Coated Ultrasmall Silver Nanoparticles: Increased Viscoelasticity Enables Potency in Biological Applications. Acs Omega. 5: 8999-9006. PMID 32337464 DOI: 10.1021/acsomega.0c00825  0.73
2020 Gangopadhyay K, Manna B, Roy S, Kumari S, Debnath O, Chowdhury S, Ghosh A, Das R. An allosteric hot spot in the tandem-SH2 domain of ZAP-70 regulates T-cell signaling. The Biochemical Journal. PMID 32203568 DOI: 10.1042/BCJ20190879  0.803
2015 Kovacs E, Das R, Wang Q, Collier TS, Cantor A, Huang Y, Wong K, Mirza A, Barros T, Grob P, Jura N, Bose R, Kuriyan J. Analysis of the role of the C-terminal tail in the regulation of the epidermal growth factor receptor. Molecular and Cellular Biology. PMID 26124280 DOI: 10.1128/Mcb.00248-15  0.811
2013 Iwig JS, Vercoulen Y, Das R, Barros T, Limnander A, Che Y, Pelton JG, Wemmer DE, Roose JP, Kuriyan J. Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1. Elife. 2: e00813. PMID 23908768 DOI: 10.7554/Elife.00813  0.692
2013 Barker CA, Allison SE, Zlitni S, Nguyen ND, Das R, Melacini G, Capretta AA, Brown ED. Degradation of MAC13243 and studies of the interaction of resulting thiourea compounds with the lipoprotein targeting chaperone LolA. Bioorganic & Medicinal Chemistry Letters. 23: 2426-31. PMID 23473681 DOI: 10.1016/J.Bmcl.2013.02.005  0.584
2013 Arkhipov A, Shan Y, Das R, Endres NF, Eastwood MP, Wemmer DE, Kuriyan J, Shaw DE. Architecture and membrane interactions of the EGF receptor. Cell. 152: 557-69. PMID 23374350 DOI: 10.1016/J.Cell.2012.12.030  0.817
2013 Endres NF, Das R, Smith AW, Arkhipov A, Kovacs E, Huang Y, Pelton JG, Shan Y, Shaw DE, Wemmer DE, Groves JT, Kuriyan J. Conformational coupling across the plasma membrane in activation of the EGF receptor. Cell. 152: 543-56. PMID 23374349 DOI: 10.1016/J.Cell.2012.12.032  0.799
2013 Iwig JS, Vercoulen Y, Das R, Barros T, Limnander A, Che Y, Pelton JG, Wemmer DE, Roose JP, Kuriyan J. Author response: Structural analysis of autoinhibition in the Ras-specific exchange factor RasGRP1 Elife. DOI: 10.7554/Elife.00813.032  0.629
2013 Endres N, Das R, Smith A, Arkhipov A, Kovacs E, Huang Y, Pelton J, Shan Y, Shaw D, Wemmer D, Groves J, Kuriyan J. EGFR transmembrane - juxtamembrane (TM-JM) segment in bicelles: MD guided NMR refined structure. Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2M20/Pdb  0.545
2013 Barker CA, Allison SE, Zlitni S, Nguyen ND, Das R, Melacini G, Capretta AA, Brown ED. Erratum to “Degradation of MAC13243 and studies of the interaction of resulting thiourea compounds with the lipoprotein targeting chaperone LolA” [Bioorg. Med. Chem. Lett. 23 (2013) 2426–2431] Bioorganic & Medicinal Chemistry Letters. 23: 4469-4470. DOI: 10.1016/J.Bmcl.2013.05.085  0.538
2012 Selvaratnam R, Mazhab-Jafari MT, Das R, Melacini G. The Auto-Inhibitory Role of the EPAC Hinge Helix as Mapped by NMR Plos One. 7. PMID 23185272 DOI: 10.1371/Journal.Pone.0048707  0.787
2012 Selvaratnam R, Vanschouwen B, Fogolari F, Mazhab-Jafari MT, Das R, Melacini G. The projection analysis of NMR chemical shifts reveals extended EPAC autoinhibition determinants Biophysical Journal. 102: 630-639. PMID 22325287 DOI: 10.1016/J.Bpj.2011.12.030  0.778
2011 Endres NF, Engel K, Das R, Kovacs E, Kuriyan J. Regulation of the catalytic activity of the EGF receptor. Current Opinion in Structural Biology. 21: 777-84. PMID 21868214 DOI: 10.1016/J.Sbi.2011.07.007  0.808
2010 McNicholl ET, Das R, SilDas S, Taylor SS, Melacini G. Communication between tandem cAMP binding domains in the regulatory subunit of protein kinase A-Ialpha as revealed by domain-silencing mutations. The Journal of Biological Chemistry. 285: 15523-37. PMID 20202931 DOI: 10.1074/Jbc.M110.105783  0.677
2009 Pathania R, Zlitni S, Barker C, Das R, Gerritsma DA, Lebert J, Awuah E, Melacini G, Capretta FA, Brown ED. Chemical genomics in Escherichia coli identifies an inhibitor of bacterial lipoprotein targeting Nature Chemical Biology. 5: 849-856. PMID 19783991 DOI: 10.1038/Nchembio.221  0.556
2009 Jura N, Endres NF, Engel K, Deindl S, Das R, Lamers MH, Wemmer DE, Zhang X, Kuriyan J. Mechanism for activation of the EGF receptor catalytic domain by the juxtamembrane segment. Cell. 137: 1293-307. PMID 19563760 DOI: 10.1016/J.Cell.2009.04.025  0.777
2009 Das R, Chowdhury S, Mazhab-Jafari MT, SilDas S, Selvaratnam R, Melacini G. Dynamically driven ligand selectivity in cyclic nucleotide binding domains Journal of Biological Chemistry. 284: 23682-23696. PMID 19403523 DOI: 10.1074/Jbc.M109.011700  0.79
2009 Jura N, Endres NF, Engel K, Deindl S, Das R, Lamers MH, Wemmer DE, Zhang X, Kuriyan J. Mechanism for Activation of the EGF Receptor Catalytic Domain by the Juxtamembrane Segment (DOI:10.1016/j.cell.2009.04.025) Cell. 138: 604. DOI: 10.1016/J.Cell.2009.07.028  0.759
2008 Das R, Mazhab-Jafari MT, Chowdhury S, SilDas S, Selvaratnam R, Melacini G. Entropy-driven cAMP-dependent allosteric control of inhibitory interactions in exchange proteins directly activated by cAMP Journal of Biological Chemistry. 283: 19691-19703. PMID 18411261 DOI: 10.1074/Jbc.M802164200  0.775
2007 Mazhab-Jafari MT, Das R, Fotheringham SA, SilDas S, Chowdhury S, Melacini G. Understanding cAMP-dependent allostery by NMR spectroscopy: Comparative analysis of the EPAC1 cAMP-binding domain in its apo and cAMP-bound states Journal of the American Chemical Society. 129: 14482-14492. PMID 17973384 DOI: 10.1021/Ja0753703  0.685
2007 Abu-Abed M, Das R, Wang L, Melacini G. Definition of an electrostatic relay switch critical for the cAMP-dependent activation of protein kinase A as revealed by the D170A mutant of RIα Proteins: Structure, Function and Genetics. 69: 112-124. PMID 17596845 DOI: 10.1002/Prot.21446  0.654
2007 Milojevic J, Esposito V, Das R, Melacini G. Understanding the molecular basis for the inhibition of the Alzheimer's Aβ-peptide oligomerization by human serum albumin using saturation transfer difference and off-resonance relaxation NMR spectroscopy Journal of the American Chemical Society. 129: 4282-4290. PMID 17367135 DOI: 10.1021/Ja067367+  0.754
2007 Das R, Esposito V, Abu-Abed M, Anand GS, Taylor SS, Melacini G. cAMP activation of PKA defines an ancient signaling mechanism Proceedings of the National Academy of Sciences of the United States of America. 104: 93-98. PMID 17182741 DOI: 10.1073/Pnas.0609033103  0.662
2007 Das R, Melacini G. A model for agonism and antagonism in an ancient and ubiquitous cAMP-binding domain Journal of Biological Chemistry. 282: 581-593. PMID 17074757 DOI: 10.1074/Jbc.M607706200  0.639
2006 Milojevic J, Esposito V, Das R, Melacini G. Analysis and parametric optimization of 1H off-resonance relaxation NMR experiments designed to map polypeptide self-recognition and other noncovalent interactions. The Journal of Physical Chemistry. B. 110: 20664-70. PMID 17034257 DOI: 10.1021/Jp063194Z  0.755
2006 Gavina JM, Das R, Britz-McKibbin P. Dynamic unfolding of a regulatory subunit of cAMP-dependent protein kinase by capillary electrophoresis: Impact of cAMP dissociation on protein stability. Electrophoresis. 27: 4196-204. PMID 17024688 DOI: 10.1002/Elps.200600300  0.371
2006 Esposito V, Sjoberg T, Das R, Brown S, Taylor SS, Melacini G. NMR assignment of the cAMP-binding domain A of the PKA regulatory subunit [62] Journal of Biomolecular Nmr. 36: 64. PMID 17016670 DOI: 10.1007/S10858-006-9050-9  0.667
2006 Das R, Abu-Abed M, Melacini G. Mapping allostery through equilibrium perturbation NMR spectroscopy Journal of the American Chemical Society. 128: 8406-8407. PMID 16802799 DOI: 10.1021/Ja060046D  0.597
2006 Milojevic J, Esposito V, Das R, Melacini G. Analysis and parametric optimization of1H off-resonance relaxation NMR experiments designed, to map polypeptide self-recognition and other noncovalent interactions Journal of Physical Chemistry B. 110: 20664-20670. DOI: 10.1021/jp063194z  0.75
2005 Esposito V, Das R, Melacini G. Mapping polypeptide self-recognition through 1H off-resonance relaxation Journal of the American Chemical Society. 127: 9358-9359. PMID 15984849 DOI: 10.1021/Ja051714I  0.543
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