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Timothy Miller - Publications

Affiliations: 
Harvard - Boston Children's Hospital 
Area:
Computer science, natural language processing
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zhou W, Dligach D, Afshar M, Gao Y, Miller TA. Improving the Transferability of Clinical Note Section Classification Models with BERT and Large Language Model Ensembles. Proceedings of the Conference. Association For Computational Linguistics. Meeting. 2023: 125-130. PMID 37786810  0.682
2023 Miller T, Bethard S, Dligach D, Savova G. End-to-end clinical temporal information extraction with multi-head attention. Proceedings of the Conference. Association For Computational Linguistics. Meeting. 2023: 313-319. PMID 37780680  0.771
2023 Zhou W, Yetisgen M, Afshar M, Gao Y, Savova G, Miller TA. Improving model transferability for clinical note section classification models using continued pretraining. Journal of the American Medical Informatics Association : Jamia. PMID 37725927 DOI: 10.1093/jamia/ocad190  0.662
2023 Gao Y, Dligach D, Miller T, Churpek MM, Afshar M. Overview of the Problem List Summarization (ProbSum) 2023 Shared Task on Summarizing Patients' Active Diagnoses and Problems from Electronic Health Record Progress Notes. Proceedings of the Conference. Association For Computational Linguistics. Meeting. 2023: 461-467. PMID 37583489 DOI: 10.18653/v1/2023.bionlp-1.43  0.658
2023 Chen S, Guevara M, Ramirez N, Murray A, Warner JL, Aerts HJWL, Miller TA, Savova GK, Mak RH, Bitterman DS. Natural Language Processing to Automatically Extract the Presence and Severity of Esophagitis in Notes of Patients Undergoing Radiotherapy. Jco Clinical Cancer Informatics. 7: e2300048. PMID 37506330 DOI: 10.1200/CCI.23.00048  0.779
2023 Sharma B, Gao Y, Miller T, Churpek MM, Afshar M, Dligach D. Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning. Proceedings of the Conference. Association For Computational Linguistics. Meeting. 2023: 78-85. PMID 37492270  0.703
2023 Derton A, Guevara M, Chen S, Moningi S, Kozono DE, Liu D, Miller TA, Savova GK, Mak RH, Bitterman DS. Natural Language Processing Methods to Empirically Explore Social Contexts and Needs in Cancer Patient Notes. Jco Clinical Cancer Informatics. 7: e2200196. PMID 37235847 DOI: 10.1200/CCI.22.00196  0.766
2023 Zhou W, Yetisgen M, Afshar M, Gao Y, Savova G, Miller TA. Improving Model Transferability for Clinical Note Section Classification Models Using Continued Pretraining. Medrxiv : the Preprint Server For Health Sciences. PMID 37162963 DOI: 10.1101/2023.04.15.23288628  0.662
2023 Gao Y, Dligach D, Miller T, Churpek MM, Uzuner O, Afshar M. Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 shared task. Journal of Biomedical Informatics. 142: 104346. PMID 37061012 DOI: 10.1016/j.jbi.2023.104346  0.678
2023 Bitterman DS, Goldner E, Finan S, Harris D, Durbin EB, Hochheiser H, Warner JL, Mak RH, Miller T, Savova GK. An end-to-end natural language processing system for automatically extracting radiotherapy events from clinical texts: NLP to extract radiotherapy events from text. International Journal of Radiation Oncology, Biology, Physics. PMID 36990288 DOI: 10.1016/j.ijrobp.2023.03.055  0.774
2023 Keloth VK, Banda JM, Gurley M, Heider PM, Kennedy G, Liu H, Liu F, Miller T, Natarajan K, V Patterson O, Peng Y, Raja K, Reeves RM, Rouhizadeh M, Shi J, et al. Representing and Utilizing Clinical Textual Data for Real World Studies: An OHDSI Approach. Journal of Biomedical Informatics. 104343. PMID 36935011 DOI: 10.1016/j.jbi.2023.104343  0.378
2023 Gao Y, Dligach D, Miller T, Caskey J, Sharma B, Churpek MM, Afshar M. DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing. Journal of Biomedical Informatics. 138: 104286. PMID 36706848 DOI: 10.1016/j.jbi.2023.104286  0.716
2022 Gao Y, Miller T, Xu D, Dligach D, Churpek MM, Afshar M. Summarizing Patients' Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models. Proceedings of Coling. International Conference On Computational Linguistics. 2022: 2979-2991. PMID 36268128  0.694
2022 Gao Y, Dligach D, Miller T, Tesch S, Laffin R, Churpek MM, Afshar M. Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding. Lrec ... International Conference On Language Resources & Evaluation : [Proceedings]. International Conference On Language Resources & Evaluation. 2022: 5484-5493. PMID 35939277  0.74
2022 Gao Y, Dligach D, Christensen L, Tesch S, Laffin R, Xu D, Miller T, Uzuner O, Churpek MM, Afshar M. A scoping review of publicly available language tasks in clinical natural language processing. Journal of the American Medical Informatics Association : Jamia. PMID 35923088 DOI: 10.1093/jamia/ocac127  0.707
2022 Ding X, Barnett M, Mehrotra A, Tuot DS, Bitterman DS, Miller TA. Classifying unstructured electronic consult messages to understand primary care physician specialty information needs. Journal of the American Medical Informatics Association : Jamia. PMID 35751571 DOI: 10.1093/jamia/ocac092  0.679
2021 Bitterman DS, Miller TA, Mak RH, Savova GK. Clinical natural language processing for radiation oncology: A review and practical primer. International Journal of Radiation Oncology, Biology, Physics. PMID 33545300 DOI: 10.1016/j.ijrobp.2021.01.044  0.764
2020 Dligach D, Afshar M, Miller T. Pre-training phenotyping classifiers. Journal of Biomedical Informatics. 103626. PMID 33259943 DOI: 10.1016/j.jbi.2020.103626  0.651
2020 Laparra E, Bethard S, Miller TA. Rethinking domain adaptation for machine learning over clinical language. Jamia Open. 3: 146-150. PMID 32734151 DOI: 10.1093/jamiaopen/ooaa010  0.383
2020 Lin C, Bethard S, Dligach D, Sadeque F, Savova G, Miller TA. Does BERT need domain adaptation for clinical negation detection? Journal of the American Medical Informatics Association : Jamia. PMID 32044989 DOI: 10.1093/Jamia/Ocaa001  0.761
2019 Miller T, Geva A, Dligach D. Extracting Adverse Drug Event Information with Minimal Engineering. Proceedings of the Conference. Association For Computational Linguistics. North American Chapter. Meeting. 2019: 22-27. PMID 34027520 DOI: 10.18653/v1/w19-1903  0.657
2019 Liu D, Dligach D, Miller T. Two-stage Federated Phenotyping and Patient Representation Learning. Proceedings of the Conference. Association For Computational Linguistics. Meeting. 2019: 283-291. PMID 33907350 DOI: 10.18653/v1/W19-5030  0.727
2019 Savova GK, Danciu I, Alamudun F, Miller T, Lin C, Bitterman DS, Tourassi G, Warner JL. Use of Natural Language Processing to Extract Clinical Cancer Phenotypes from Electronic Medical Records. Cancer Research. PMID 31395609 DOI: 10.1158/0008-5472.Can-19-0579  0.787
2019 Dligach D, Afshar M, Miller T. Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse. Journal of the American Medical Informatics Association : Jamia. PMID 31233140 DOI: 10.1093/jamia/ocz072  0.709
2019 Viani N, Miller TA, Napolitano C, Priori SG, Savova GK, Bellazzi R, Sacchi L. Supervised methods to extract clinical events from cardiology reports in Italian. Journal of Biomedical Informatics. 103219. PMID 31150777 DOI: 10.1016/j.jbi.2019.103219  0.689
2017 Savova GK, Tseytlin E, Finan S, Castine M, Miller T, Medvedeva O, Harris D, Hochheiser H, Lin C, Chavan G, Jacobson RS. DeepPhe: A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records. Cancer Research. 77: e115-e118. PMID 29092954 DOI: 10.1158/0008-5472.Can-17-0615  0.624
2017 Miller T, Dligach D, Bethard S, Lin C, Savova G. Towards Generalizable Entity-Centric Clinical Coreference Resolution. Journal of Biomedical Informatics. PMID 28438706 DOI: 10.1016/J.Jbi.2017.04.015  0.749
2015 Dligach D, Miller T, Savova GK. Semi-supervised Learning for Phenotyping Tasks. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2015: 502-11. PMID 26958183  0.714
2015 Lin C, Dligach D, Miller TA, Bethard S, Savova GK. Multilayered temporal modeling for the clinical domain. Journal of the American Medical Informatics Association : Jamia. PMID 26521301 DOI: 10.1093/Jamia/Ocv113  0.735
2015 Lin C, Karlson EW, Dligach D, Ramirez MP, Miller TA, Mo H, Braggs NS, Cagan A, Gainer V, Denny JC, Savova GK. Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. Journal of the American Medical Informatics Association : Jamia. 22: e151-61. PMID 25344930 DOI: 10.1136/Amiajnl-2014-002642  0.75
2014 Styler WF, Bethard S, Finan S, Palmer M, Pradhan S, de Groen PC, Erickson B, Miller T, Lin C, Savova G, Pustejovsky J. Temporal Annotation in the Clinical Domain. Transactions of the Association For Computational Linguistics. 2: 143-154. PMID 29082229 DOI: 10.1162/Tacl_A_00172  0.666
2014 Wu S, Miller T, Masanz J, Coarr M, Halgrim S, Carrell D, Clark C. Negation's not solved: generalizability versus optimizability in clinical natural language processing. Plos One. 9: e112774. PMID 25393544 DOI: 10.1371/journal.pone.0112774  0.306
2014 Dligach D, Bethard S, Becker L, Miller T, Savova GK. Discovering body site and severity modifiers in clinical texts. Journal of the American Medical Informatics Association : Jamia. 21: 448-54. PMID 24091648 DOI: 10.1136/Amiajnl-2013-001766  0.726
2013 Pathak J, Bailey KR, Beebe CE, Bethard S, Carrell DC, Chen PJ, Dligach D, Endle CM, Hart LA, Haug PJ, Huff SM, Kaggal VC, Li D, Liu H, Marchant K, ... ... Miller T, et al. Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium. Journal of the American Medical Informatics Association : Jamia. 20: e341-8. PMID 24190931 DOI: 10.1136/Amiajnl-2013-001939  0.766
2013 Lin C, Karlson EW, Canhao H, Miller TA, Dligach D, Chen PJ, Perez RN, Shen Y, Weinblatt ME, Shadick NA, Plenge RM, Savova GK. Automatic prediction of rheumatoid arthritis disease activity from the electronic medical records. Plos One. 8: e69932. PMID 23976944 DOI: 10.1371/journal.pone.0069932  0.77
2012 Zheng J, Chapman WW, Miller TA, Lin C, Crowley RS, Savova GK. A system for coreference resolution for the clinical narrative. Journal of the American Medical Informatics Association : Jamia. 19: 660-7. PMID 22298565 DOI: 10.1136/Amiajnl-2011-000599  0.601
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