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Laurence Ettwiller, PhD - Publications

Affiliations: 
New England Biolabs 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Ugolini C, Mulroney L, Leger A, Castelli M, Criscuolo E, Williamson MK, Davidson AD, Almuqrin A, Giambruno R, Jain M, Frigè G, Olsen H, Tzertzinis G, Schildkraut I, Wulf MG, ... ... Ettwiller L, et al. Nanopore ReCappable sequencing maps SARS-CoV-2 5' capping sites and provides new insights into the structure of sgRNAs. Nucleic Acids Research. PMID 35244721 DOI: 10.1093/nar/gkac144  0.553
2021 Yang W, Lin YC, Johnson W, Dai N, Vaisvila R, Weigele P, Lee YJ, Corrêa IR, Schildkraut I, Ettwiller L. A Genome-Phenome Association study in native microbiomes identifies a mechanism for cytosine modification in DNA and RNA. Elife. 10. PMID 34747693 DOI: 10.7554/eLife.70021  0.311
2021 Baum C, Lin YC, Fomenkov A, Anton BP, Chen L, Yan B, Evans TC, Roberts RJ, Tolonen AC, Ettwiller L. Rapid identification of methylase specificity (RIMS-seq) jointly identifies methylated motifs and generates shotgun sequencing of bacterial genomes. Nucleic Acids Research. PMID 34417598 DOI: 10.1093/nar/gkab705  0.37
2021 Wang Q, Liu Z, Yan B, Chou WC, Ettwiller L, Ma Q, Liu B. A novel computational framework for genome-scale alternative transcription units prediction. Briefings in Bioinformatics. PMID 33957668 DOI: 10.1093/bib/bbab162  0.441
2019 Herpin A, Schmidt C, Kneitz S, Gobé C, Regensburger M, Le Cam A, Montfort J, Adolfi MC, Lillesaar C, Wilhelm D, Kraeussling M, Mourot B, Porcon B, Pannetier M, Pailhoux E, ... Ettwiller L, et al. A novel evolutionary conserved mechanism of RNA stability regulates synexpression of primordial germ cell-specific genes prior to the sex-determination stage in medaka. Plos Biology. 17: e3000185. PMID 30947255 DOI: 10.1371/Journal.Pbio.3000185  0.422
2019 Williams L, Ponnaluri VKC, Sexton BS, Saleh L, Marks K, Samaranayake M, Ettwiller L, Guan S, Church HE, Dai N, Tamanaha E, Yigit E, Langhorst B, Sun Z, Evans TC, et al. Abstract 820: Enzymatic Methyl-Seq: methylome analysis of challenging DNA samples Cancer Research. 79: 820-820. DOI: 10.1158/1538-7445.Am2019-820  0.324
2018 Yan B, Boitano M, Clark TA, Ettwiller L. SMRT-Cappable-seq reveals complex operon variants in bacteria. Nature Communications. 9: 3676. PMID 30201986 DOI: 10.1038/S41467-018-05997-6  0.507
2018 Liu P, Heider M, Song C, Chen L, Ettwiller L, Higgins L, Dimalanta E, Davis T, Evans T. Abstract 1425: A multi-enzyme DNA repair mix improves library quality and sequencing accuracy in FFPE tumor samples Cancer Research. 78: 1425-1425. DOI: 10.1158/1538-7445.Am2018-1425  0.357
2017 Liu P, Chen L, Ettwiller L, Dimalanta E, Davis TB, Evans TC. Abstract 5360: DNA repair increases sequencing accuracy without altering actual mutation frequency in clinical samples Cancer Research. 77: 5360-5360. DOI: 10.1158/1538-7445.Am2017-5360  0.325
2016 Boutard M, Ettwiller L, Cerisy T, Alberti A, Labadie K, Salanoubat M, Schildkraut I, Tolonen AC. Global repositioning of transcription start sites in a plant-fermenting bacterium. Nature Communications. 7: 13783. PMID 27982035 DOI: 10.1038/Ncomms13783  0.461
2016 Ettwiller L, Buswell J, Yigit E, Schildkraut I. A novel enrichment strategy reveals unprecedented number of novel transcription start sites at single base resolution in a model prokaryote and the gut microbiome. Bmc Genomics. 17: 199. PMID 26951544 DOI: 10.1186/S12864-016-2539-Z  0.405
2016 liu p, Chen L, Ettwiller L, Sumner C, Stewart FJ, Dimalanta ET, Davis TB, Thomas EC. Abstract 3628: Improving sequencing quality of libraries prepared from FFPE DNA Cancer Research. 76: 3628-3628. DOI: 10.1158/1538-7445.Am2016-3628  0.328
2015 Dolle D, Mateo JL, Eichenlaub MP, Sinn R, Reinhardt R, Höckendorf B, Inoue D, Centanin L, Ettwiller L, Wittbrodt J. Correction: Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle. Plos One. 10: e0143989. PMID 26599359 DOI: 10.1371/Journal.Pone.0143989  0.367
2015 Dolle D, Mateo JL, Eichenlaub MP, Sinn R, Reinhardt R, Höckendorf B, Inoue D, Centanin L, Ettwiller L, Wittbrodt J. Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle. Plos One. 10: e0141487. PMID 26505748 DOI: 10.1371/Journal.Pone.0141487  0.392
2015 Poole CB, Ettwiller L, Tanner NA, Evans TC, Wanji S, Carlow CK. Genome Filtering for New DNA Biomarkers of Loa loa Infection Suitable for Loop-Mediated Isothermal Amplification. Plos One. 10: e0139286. PMID 26414073 DOI: 10.1371/Journal.Pone.0139286  0.341
2015 Raposo AA, Vasconcelos FF, Drechsel D, Marie C, Johnston C, Dolle D, Bithell A, Gillotin S, van den Berg DL, Ettwiller L, Flicek P, Crawford GE, Parras CM, Berninger B, Buckley NJ, et al. Ascl1 Coordinately Regulates Gene Expression and the Chromatin Landscape during Neurogenesis. Cell Reports. PMID 25753420 DOI: 10.1016/J.Celrep.2015.02.025  0.444
2015 Mateo JL, van den Berg DL, Haeussler M, Drechsel D, Gaber ZB, Castro DS, Robson P, Crawford GE, Flicek P, Ettwiller L, Wittbrodt J, Guillemot F, Martynoga B. Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal. Genome Research. 25: 41-56. PMID 25294244 DOI: 10.1101/Gr.173435.114  0.412
2015 Liu P, Chen L, Ettwiller L, Sumner C, Stewart F, Dimalanta E, Davis T, Evans T. Abstract 4886: Repair of challenging FFPE DNA improves library success rate and sequencing quality Cancer Research. 75: 4886-4886. DOI: 10.1158/1538-7445.Am2015-4886  0.304
2014 Symmons O, Uslu VV, Tsujimura T, Ruf S, Nassari S, Schwarzer W, Ettwiller L, Spitz F. Functional and topological characteristics of mammalian regulatory domains. Genome Research. 24: 390-400. PMID 24398455 DOI: 10.1101/Gr.163519.113  0.434
2013 Martynoga B, Mateo JL, Zhou B, Andersen J, Achimastou A, Urbán N, van den Berg D, Georgopoulou D, Hadjur S, Wittbrodt J, Ettwiller L, Piper M, Gronostajski RM, Guillemot F. Epigenomic enhancer annotation reveals a key role for NFIX in neural stem cell quiescence. Genes & Development. 27: 1769-86. PMID 23964093 DOI: 10.1101/Gad.216804.113  0.38
2013 Symmons O, Ettwiller L, Ruf S, Uslu V, Spitz F. Charting the regulatory landscape of the mouse genome in vivo Epigenetics & Chromatin. 6. DOI: 10.1186/1756-8935-6-S1-O41  0.439
2012 Martynoga B, Mateo J, Chu L, Haussler M, Castro D, Bergmann C, Robson P, Ettwiller L, Guillemot F. ISDN2012_0187: Tight clusters of bHLH, Sox and POU transcription factors bind and regulate neural stem cell enhancers to control pluripotency and self‐renewal International Journal of Developmental Neuroscience. 30: 626-626. DOI: 10.1016/J.Ijdevneu.2012.10.066  0.331
2011 Eichenlaub MP, Ettwiller L. De novo genesis of enhancers in vertebrates. Plos Biology. 9: e1001188. PMID 22069375 DOI: 10.1371/Journal.Pbio.1001188  0.443
2011 Mongin E, Auer TO, Bourrat F, Gruhl F, Dewar K, Blanchette M, Wittbrodt J, Ettwiller L. Combining computational prediction of cis-regulatory elements with a new enhancer assay to efficiently label neuronal structures in the medaka fish. Plos One. 6: e19747. PMID 21637758 DOI: 10.1371/Journal.Pone.0019747  0.357
2011 Castro DS, Martynoga B, Parras C, Ramesh V, Pacary E, Johnston C, Drechsel D, Lebel-Potter M, Garcia LG, Hunt C, Dolle D, Bithell A, Ettwiller L, Buckley N, Guillemot F. A novel function of the proneural factor Ascl1 in progenitor proliferation identified by genome-wide characterization of its targets. Genes & Development. 25: 930-45. PMID 21536733 DOI: 10.1101/Gad.627811  0.407
2011 Ruf S, Symmons O, Uslu VV, Dolle D, Hot C, Ettwiller L, Spitz F. Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor. Nature Genetics. 43: 379-86. PMID 21423180 DOI: 10.1038/Ng.790  0.398
2011 Weger BD, Sahinbas M, Otto GW, Mracek P, Armant O, Dolle D, Lahiri K, Vallone D, Ettwiller L, Geisler R, Foulkes NS, Dickmeis T. The light responsive transcriptome of the Zebrafish: Function and regulation Plos One. 6. PMID 21390203 DOI: 10.1371/Journal.Pone.0017080  0.376
2010 Haudry Y, Ramialison M, Paten B, Wittbrodt J, Ettwiller L. Using Trawler_standalone to discover overrepresented motifs in DNA and RNA sequences derived from various experiments including chromatin immunoprecipitation. Nature Protocols. 5: 323-34. PMID 20134431 DOI: 10.1038/Nprot.2009.158  0.62
2008 Ettwiller L, Budd A, Spitz F, Wittbrodt J. Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences. Genome Biology. 9: R172. PMID 19087242 DOI: 10.1186/Gb-2008-9-12-R172  0.483
2008 Ramialison M, Bajoghli B, Aghaallaei N, Ettwiller L, Gaudan S, Wittbrodt B, Czerny T, Wittbrodt J. Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools. Genome Biology. 9: R145. PMID 18828907 DOI: 10.1186/Gb-2008-9-10-R145  0.432
2007 Del Bene F, Ettwiller L, Skowronska-Krawczyk D, Baier H, Matter JM, Birney E, Wittbrodt J. In vivo validation of a computationally predicted conserved Ath5 target gene set. Plos Genetics. 3: 1661-71. PMID 17892326 DOI: 10.1371/Journal.Pgen.0030159  0.617
2007 Ettwiller L, Paten B, Ramialison M, Birney E, Wittbrodt J. Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation. Nature Methods. 4: 563-5. PMID 17589518 DOI: 10.1038/Nmeth1061  0.653
2006 Potier MC, Rivals I, Mercier G, Ettwiller L, Moldrich RX, Laffaire J, Personnaz L, Rossier J, Dauphinot L. Transcriptional disruptions in Down syndrome: a case study in the Ts1Cje mouse cerebellum during post-natal development. Journal of Neurochemistry. 97: 104-9. PMID 16635258 DOI: 10.1111/J.1471-4159.2005.03624.X  0.355
2005 Ettwiller L, Paten B, Souren M, Loosli F, Wittbrodt J, Birney E. The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates. Genome Biology. 6: R104. PMID 16356267 DOI: 10.1186/Gb-2005-6-12-R104  0.658
2005 Dauphinot L, Lyle R, Rivals I, Dang MT, Moldrich RX, Golfier G, Ettwiller L, Toyama K, Rossier J, Personnaz L, Antonarakis SE, Epstein CJ, Sinet PM, Potier MC. The cerebellar transcriptome during postnatal development of the Ts1Cje mouse, a segmental trisomy model for Down syndrome. Human Molecular Genetics. 14: 373-84. PMID 15590701 DOI: 10.1093/Hmg/Ddi033  0.363
2004 Ettwiller L, Paten B. Guilt by multiple association Heredity. 92: 481-482. DOI: 10.1038/Sj.Hdy.6800452  0.621
2003 Ettwiller LM, Rung J, Birney E. Discovering novel cis-regulatory motifs using functional networks. Genome Research. 13: 883-95. PMID 12727907 DOI: 10.1101/Gr.866403  0.552
2003 Ureta-Vidal A, Ettwiller L, Birney E. Comparative genomics: genome-wide analysis in metazoan eukaryotes. Nature Reviews. Genetics. 4: 251-62. PMID 12671656 DOI: 10.1038/Nrg1043  0.569
2001 Chiang LW, Grenier JM, Ettwiller L, Jenkins LP, Ficenec D, Martin J, Jin F, DiStefano PS, Wood A. An orchestrated gene expression component of neuronal programmed cell death revealed by cDNA array analysis. Proceedings of the National Academy of Sciences of the United States of America. 98: 2814-9. PMID 11226323 DOI: 10.1073/Pnas.051630598  0.375
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