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Gaurav Varshney - Publications

Affiliations: 
Gene and Human Disease Research Program Oaklahoma Medical Research Foundation 
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Petree C, Varshney GK. MultiFRAGing: Rapid and Simultaneous Genotyping of Multiple Alleles in a Single Reaction. Scientific Reports. 10: 3172. PMID 32081936 DOI: 10.1038/s41598-020-59986-1  0.337
2020 Vona B, Doll J, Hofrichter MAH, Haaf T, Varshney GK. Small fish, big prospects: using zebrafish to unravel the mechanisms of hereditary hearing loss. Hearing Research. 107906. PMID 32063424 DOI: 10.1016/j.heares.2020.107906  0.305
2019 Yao Q, Wang L, Mittal R, Yan D, Richmond MT, Denyer S, Requena T, Liu K, Varshney GK, Lu Z, Liu X. Transcriptomic Analyses of Inner Ear Sensory Epithelia in Zebrafish. Anatomical Record (Hoboken, N.J. : 2007). PMID 31883312 DOI: 10.1002/Ar.24331  0.309
2019 Liu K, Petree C, Requena T, Varshney P, Varshney GK. Expanding the CRISPR Toolbox in Zebrafish for Studying Development and Disease. Frontiers in Cell and Developmental Biology. 7: 13. PMID 30886848 DOI: 10.3389/fcell.2019.00013  0.338
2018 Pei W, Xu L, Huang SC, Pettie K, Idol J, Rissone A, Jimenez E, Sinclair JW, Slevin C, Varshney GK, Jones M, Carrington B, Bishop K, Huang H, Sood R, et al. Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues. Npj Regenerative Medicine. 3: 11. PMID 29872546 DOI: 10.1038/s41536-018-0050-7  0.434
2016 Pei W, Tanaka K, Huang SC, Xu L, Liu B, Sinclair J, Idol J, Varshney GK, Huang H, Lin S, Nussenblatt RB, Mori R, Burgess SM. Extracellular HSP60 triggers tissue regeneration and wound healing by regulating inflammation and cell proliferation. Npj Regenerative Medicine. 1. PMID 28936359 DOI: 10.1038/npjregenmed.2016.13  0.323
2016 Watkins-Chow DE, Varshney GK, Garrett LJ, Chen Z, Jimenez EA, Rivas C, Bishop KS, Sood R, Harper UL, Pavan WJ, Burgess SM. Highly-Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection. G3 (Bethesda, Md.). PMID 28040780 DOI: 10.1534/g3.116.038091  0.433
2016 Varshney GK, Carrington B, Pei W, Bishop K, Chen Z, Fan C, Xu L, Jones M, LaFave MC, Ledin J, Sood R, Burgess SM. A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish. Nature Protocols. 11: 2357-2375. PMID 27809318 DOI: 10.1038/Nprot.2016.141  0.424
2015 Varshney GK, Sood R, Burgess SM. Understanding and Editing the Zebrafish Genome. Advances in Genetics. 92: 1-52. PMID 26639914 DOI: 10.1016/bs.adgen.2015.09.002  0.318
2015 Varshney GK, Zhang S, Pei W, Adomako-Ankomah A, Fohtung J, Schaffer K, Carrington B, Maskeri A, Slevin C, Wolfsberg T, Ledin J, Sood R, Burgess SM. CRISPRz: a database of zebrafish validated sgRNAs. Nucleic Acids Research. PMID 26438539 DOI: 10.1093/Nar/Gkv998  0.427
2015 Carrington B, Varshney GK, Burgess SM, Sood R. CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic Acids Research. PMID 26253739 DOI: 10.1093/nar/gkv802  0.405
2015 Seiler C, Gebhart N, Zhang Y, Shinton SA, Li YS, Ross NL, Liu X, Li Q, Bilbee AN, Varshney GK, LaFave MC, Burgess SM, Balciuniene J, Balciunas D, Hardy RR, et al. Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. Plos One. 10: e0131908. PMID 26161877 DOI: 10.1371/Journal.Pone.0131908  0.355
2015 Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, et al. High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome Research. 25: 1030-42. PMID 26048245 DOI: 10.1101/Gr.186379.114  0.435
2015 Quach HN, Tao S, Vrljicak P, Joshi A, Ruan H, Sukumaran R, Varshney GK, LaFave MC, Burgess SM, Winkler C, Emelyanov A, Parinov S, Sampath K. A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. G3 (Bethesda, Md.). 5: 1283-99. PMID 25840430 DOI: 10.1534/G3.114.015842  0.371
2015 Gallardo VE, Varshney GK, Lee M, Bupp S, Xu L, Shinn P, Crawford NP, Inglese J, Burgess SM. Phenotype-driven chemical screening in zebrafish for compounds that inhibit collective cell migration identifies multiple pathways potentially involved in metastatic invasion. Disease Models & Mechanisms. 8: 565-76. PMID 25810455 DOI: 10.1242/dmm.018689  0.309
2014 Varshney GK, Burgess SM. Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. Briefings in Functional Genomics. 13: 82-94. PMID 24162064 DOI: 10.1093/bfgp/elt042  0.388
2013 Varshney GK, Lu J, Gildea DE, Huang H, Pei W, Yang Z, Huang SC, Schoenfeld D, Pho NH, Casero D, Hirase T, Mosbrook-Davis D, Zhang S, Jao LE, Zhang B, et al. A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome Research. 23: 727-35. PMID 23382537 DOI: 10.1101/Gr.151464.112  0.322
2011 Amsterdam A, Varshney GK, Burgess SM. Retroviral-mediated Insertional Mutagenesis in Zebrafish. Methods in Cell Biology. 104: 59-82. PMID 21924157 DOI: 10.1016/B978-0-12-374814-0.00004-5  0.309
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