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Marwan Abdellah - Publications

Affiliations: 
EPFL / Blue Brain Project 
Area:
Simulation Neuroscience, Neuroinformatics
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20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Iavarone E, Simko J, Shi Y, Bertschy M, García-Amado M, Litvak P, Kaufmann AK, O'Reilly C, Amsalem O, Abdellah M, Chevtchenko G, Coste B, Courcol JD, Ecker A, Favreau C, et al. Thalamic control of sensory processing and spindles in a biophysical somatosensory thalamoreticular circuit model of wakefulness and sleep. Cell Reports. 42: 112200. PMID 36867532 DOI: 10.1016/j.celrep.2023.112200  0.783
2022 Abdellah M, Cantero JJG, Guerrero NR, Foni A, Coggan JS, Calì C, Agus M, Zisis E, Keller D, Hadwiger M, Magistretti PJ, Markram H, Schürmann F. Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience. Briefings in Bioinformatics. PMID 36434788 DOI: 10.1093/bib/bbac491  0.594
2022 Chindemi G, Abdellah M, Amsalem O, Benavides-Piccione R, Delattre V, Doron M, Ecker A, Jaquier AT, King J, Kumbhar P, Monney C, Perin R, Rössert C, Tuncel AM, Van Geit W, et al. A calcium-based plasticity model for predicting long-term potentiation and depression in the neocortex. Nature Communications. 13: 3038. PMID 35650191 DOI: 10.1038/s41467-022-30214-w  0.72
2021 Zisis E, Keller D, Kanari L, Arnaudon A, Gevaert M, Delemontex T, Coste B, Foni A, Abdellah M, Calì C, Hess K, Magistretti PJ, Schürmann F, Markram H. Digital Reconstruction of the Neuro-Glia-Vascular Architecture. Cerebral Cortex (New York, N.Y. : 1991). PMID 34387659 DOI: 10.1093/cercor/bhab254  0.787
2021 Abdellah M, Foni A, Zisis E, Guerrero NR, Lapere S, Coggan JS, Keller D, Markram H, Schürmann F. Metaball skinning of synthetic astroglial morphologies into realistic mesh models for visual analytics and in silico simulations. Bioinformatics (Oxford, England). 37: i426-i433. PMID 34252950 DOI: 10.1093/bioinformatics/btab280  0.668
2021 Newton TH, Reimann MW, Abdellah M, Chevtchenko G, Muller EB, Markram H. In silico voltage-sensitive dye imaging reveals the emergent dynamics of cortical populations. Nature Communications. 12: 3630. PMID 34131136 DOI: 10.1038/s41467-021-23901-7  0.771
2020 Abdellah M, Guerrero NR, Lapere S, Coggan JS, Keller D, Coste B, Dagar S, Courcol JD, Markram H, Schürmann F. Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis. Bioinformatics (Oxford, England). 36: i534-i541. PMID 32657395 DOI: 10.1093/Bioinformatics/Btaa461  0.557
2019 Kanari L, Ramaswamy S, Shi Y, Morand S, Meystre J, Perin R, Abdellah M, Wang Y, Hess K, Markram H. Objective Morphological Classification of Neocortical Pyramidal Cells. Cerebral Cortex (New York, N.Y. : 1991). PMID 30715238 DOI: 10.1093/Cercor/Bhy339  0.746
2018 Coggan JS, Calì C, Keller D, Agus M, Boges D, Abdellah M, Kare K, Lehväslaiho H, Eilemann S, Jolivet RB, Hadwiger M, Markram H, Schürmann F, Magistretti PJ. A Process for Digitizing and Simulating Biologically Realistic Oligocellular Networks Demonstrated for the Neuro-Glio-Vascular Ensemble. Frontiers in Neuroscience. 12: 664. PMID 30319342 DOI: 10.3389/Fnins.2018.00664  0.623
2018 Abdellah M, Hernando J, Eilemann S, Lapere S, Antille N, Markram H, Schürmann F. NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks. Bioinformatics (Oxford, England). 34: i574-i582. PMID 29949998 DOI: 10.1093/bioinformatics/bty231  0.637
2017 Abdellah M, Hernando J, Antille N, Eilemann S, Markram H, Schürmann F. Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies. Bmc Bioinformatics. 18: 402. PMID 28929974 DOI: 10.1186/s12859-017-1788-4  0.671
2017 Abdellah M, Abdelaziz A, Eslam Ali EM, Abdelaziz S, Sayed A, Owis MI, Eldeib A. Parallel generation of digitally reconstructed radiographs on heterogeneous multi-GPU workstations. Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference. 2016: 3953-3956. PMID 28269150 DOI: 10.1109/EMBC.2016.7591592  0.314
2017 Abdellah M, Bilgili A, Eilemann S, Shillcock J, Markram H, Schürmann F. Bio-physically plausible visualization of highly scattering fluorescent neocortical models for in silico experimentation. Bmc Bioinformatics. 18: 62. PMID 28251871 DOI: 10.1186/s12859-016-1444-4  0.591
2016 Abdellah M, Abdallah M, Alzanati M, Eldeib A. Efficient rendering of digitally reconstructed radiographs on heterogeneous computing architectures using central slice theorem. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 3957-3960. PMID 28269151 DOI: 10.1109/EMBC.2016.7591593  0.322
2016 Abdellah M, Eldeib A, Owis MI. GPU acceleration for digitally reconstructed radiographs using bindless texture objects and CUDA/OpenGL interoperability. Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference. 2015: 4242-5. PMID 26737231 DOI: 10.1109/EMBC.2015.7319331  0.347
2016 Abdellah M, Eldeib A, Owis MI. Accelerating DRR generation using Fourier slice theorem on the GPU. Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual International Conference. 2015: 4238-41. PMID 26737230 DOI: 10.1109/EMBC.2015.7319330  0.322
2015 Ramaswamy S, Courcol JD, Abdellah M, Adaszewski SR, Antille N, Arsever S, Atenekeng G, Bilgili A, Brukau Y, Chalimourda A, Chindemi G, Delalondre F, Dumusc R, Eilemann S, Gevaert ME, et al. The neocortical microcircuit collaboration portal: a resource for rat somatosensory cortex. Frontiers in Neural Circuits. 9: 44. PMID 26500503 DOI: 10.3389/Fncir.2015.00044  0.728
2015 Markram H, Muller E, Ramaswamy S, Reimann MW, Abdellah M, Sanchez CA, Ailamaki A, Alonso-Nanclares L, Antille N, Arsever S, Kahou GA, Berger TK, Bilgili A, Buncic N, Chalimourda A, et al. Reconstruction and Simulation of Neocortical Microcircuitry. Cell. 163: 456-492. PMID 26451489 DOI: 10.1016/J.Cell.2015.09.029  0.587
2015 Abdellah M, Bilgili A, Eilemann S, Markram H, Schürmann F. Physically-based in silico light sheet microscopy for visualizing fluorescent brain models. Bmc Bioinformatics. 16: S8. PMID 26329404 DOI: 10.1186/1471-2105-16-S11-S8  0.558
2015 Abdellah M, Eldeib A, Sharawi A. High Performance GPU-Based Fourier Volume Rendering. International Journal of Biomedical Imaging. 2015: 590727. PMID 25866499 DOI: 10.1155/2015/590727  0.293
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