| Year |
Citation |
Score |
| 2020 |
Sereda YV, Ortoleva PJ. Temporally Coarse-Grained All-Atom Molecular Dynamics Achieved via Stochastic Padé Approximants. The Journal of Physical Chemistry. B. PMID 31958947 DOI: 10.1021/Acs.Jpcb.9B10735 |
0.4 |
|
| 2019 |
Debnath S, Yang J, Ortoleva P, Raghavachari K. Understanding the Origin of 2D Self-Assembly of Tricarbazole Macrocycles: An Integrated Quantum Mechanical/Molecular Dynamics Study The Journal of Physical Chemistry C. 123: 17616-17623. DOI: 10.1021/Acs.Jpcc.9B04290 |
0.345 |
|
| 2018 |
Castillo HD, Espinosa-Duran JM, Dobscha JR, Ashley DC, Debnath S, Hirsch BE, Schrecke SR, Baik MH, Ortoleva PJ, Raghavachari K, Flood AH, Tait SL. Amphiphile self-assembly dynamics at the solution-solid interface reveal asymmetry in head/tail desorption. Chemical Communications (Cambridge, England). PMID 30083691 DOI: 10.1039/C8Cc04465A |
0.311 |
|
| 2017 |
Espinosa-Duran JM, Sereda YV, Abi-Mansour A, Ortoleva P. A multiscale molecular dynamics approach to energy transfer in nanomaterials. Journal of Chemical Theory and Computation. PMID 29191013 DOI: 10.1021/Acs.Jctc.7B00702 |
0.356 |
|
| 2017 |
Jiang J, Abi Mansour A, Ortoleva PJ. Multiscale time-dependent density functional theory: Demonstration for plasmons. The Journal of Chemical Physics. 147: 054102. PMID 28789546 DOI: 10.1063/1.4994896 |
0.339 |
|
| 2016 |
Abi Mansour A, Ortoleva PJ. Reverse Coarse-graining for Equation-free Modeling: Application to Multiscale Molecular Dynamics. Journal of Chemical Theory and Computation. PMID 27631340 DOI: 10.1021/Acs.Jctc.6B00348 |
0.384 |
|
| 2016 |
Clancy CE, An G, Cannon WR, Liu Y, May EE, Ortoleva P, Popel AS, Sluka JP, Su J, Vicini P, Zhou X, Eckmann DM. Multiscale Modeling in the Clinic: Drug Design and Development. Annals of Biomedical Engineering. PMID 26885640 DOI: 10.1007/S10439-016-1563-0 |
0.312 |
|
| 2016 |
Abi Mansour A, Ortoleva PJ. Implicit time integration for multiscale molecular dynamics using transcendental Padé approximants. Journal of Chemical Theory and Computation. PMID 26845510 DOI: 10.1021/Acs.Jctc.5B01232 |
0.407 |
|
| 2016 |
Somogyi E, Mansour AA, Ortoleva PJ. ProtoMD: A prototyping toolkit for multiscale molecular dynamics Computer Physics Communications. 202: 337-350. DOI: 10.1016/J.Cpc.2016.01.014 |
0.784 |
|
| 2015 |
Mansour AA, Sereda YV, Yang J, Ortoleva PJ. Prospective on multiscale simulation of virus-like particles: Application to computer-aided vaccine design. Vaccine. PMID 26073014 DOI: 10.1016/J.Vaccine.2015.05.099 |
0.415 |
|
| 2015 |
Jiang J, Yang J, Sereda YV, Ortoleva PJ. Early stage P22 viral capsid self-assembly mediated by scaffolding protein: atom-resolved model and molecular dynamics simulation. The Journal of Physical Chemistry. B. 119: 5156-62. PMID 25815608 DOI: 10.1021/Acs.Jpcb.5B00303 |
0.327 |
|
| 2015 |
Sereda YV, Ortoleva PJ. Autonomous oscillation in supramolecular assemblies: Role of free energy landscape and fluctuations Physica a: Statistical Mechanics and Its Applications. 437: 442-456. DOI: 10.1016/J.Physa.2015.05.005 |
0.306 |
|
| 2014 |
Abi Mansour A, Ortoleva PJ. Multiscale Factorization Method for Simulating Mesoscopic Systems with Atomic Precision. Journal of Chemical Theory and Computation. 10: 518-523. PMID 24803852 DOI: 10.1021/Ct400615A |
0.391 |
|
| 2014 |
Sereda YV, Ortoleva PJ. A multiscale variational approach to the kinetics of viscous classical liquids: the coarse-grained mean field approximation. The Journal of Chemical Physics. 140: 134104. PMID 24712777 DOI: 10.1063/1.4869860 |
0.374 |
|
| 2014 |
Sereda YV, Espinosa-Duran JM, Ortoleva PJ. Energy transfer between a nanosystem and its host fluid: A multiscale factorization approach Journal of Chemical Physics. 140. PMID 24559333 DOI: 10.1063/1.4864200 |
0.33 |
|
| 2014 |
Yang J, Singharoy A, Sereda YV, Ortoleva PJ. Quasiequivalence of multiscale coevolution and ensemble MD simulations: A demonstration with lactoferrin Chemical Physics Letters. 616: 154-160. DOI: 10.1016/J.Cplett.2014.10.020 |
0.651 |
|
| 2013 |
Singharoy A, Polavarapu A, Joshi H, Baik MH, Ortoleva P. Epitope fluctuations in the human papillomavirus are under dynamic allosteric control: a computational evaluation of a new vaccine design strategy. Journal of the American Chemical Society. 135: 18458-68. PMID 24199651 DOI: 10.1021/Ja407489R |
0.631 |
|
| 2013 |
Joshi H, Lewis K, Singharoy A, Ortoleva PJ. Epitope engineering and molecular metrics of immunogenicity: A computational approach to VLP-based vaccine design Vaccine. 31: 4841-4847. PMID 23933338 DOI: 10.1016/J.Vaccine.2013.07.075 |
0.582 |
|
| 2013 |
Ortoleva P, Singharoy A, Pankavich S. Hierarchical Multiscale Modeling of Macromolecules and their Assemblies. Soft Matter. 9: 4319-4335. PMID 23671457 DOI: 10.1039/C3Sm50176K |
0.699 |
|
| 2013 |
Sereda YV, Ortoleva PJ. Variational methods for time-dependent classical many-particle systems. Physica A. 392: 628-638. PMID 23459064 DOI: 10.1016/J.Physa.2012.10.005 |
0.373 |
|
| 2013 |
Quick R, Singharoy A, Ortoleva P. Quasiperiodic oscillation and possible Second Law violation in a nanosystem Chemical Physics Letters. 571: 61-65. DOI: 10.1016/J.Cplett.2013.03.083 |
0.61 |
|
| 2012 |
Singharoy A, Joshi H, Ortoleva PJ. Multiscale macromolecular simulation: Role of evolving ensembles Journal of Chemical Information and Modeling. 52: 2638-2649. PMID 22978601 DOI: 10.1021/Ci3002952 |
0.669 |
|
| 2012 |
Singharoy A, Sereda Y, Ortoleva PJ. Hierarchical Order Parameters for Macromolecular Assembly Simulations I: Construction and Dynamical Properties of Order Parameters. Journal of Chemical Theory and Computation. 8: 1379-1392. PMID 22661911 DOI: 10.1021/Ct200574X |
0.695 |
|
| 2012 |
Singharoy A, Joshi H, Cheluvaraja S, Miao Y, Brown D, Ortoleva P. Simulating microbial systems: addressing model uncertainty/incompleteness via multiscale and entropy methods. Methods in Molecular Biology (Clifton, N.J.). 881: 433-67. PMID 22639222 DOI: 10.1007/978-1-61779-827-6_15 |
0.735 |
|
| 2012 |
Fontus M, Ortoleva P. Electrophysiological-metabolic modeling of microbes: Applications in fuel cells and environment analysis Methods in Molecular Biology. 881: 411-431. PMID 22639221 DOI: 10.1007/978-1-61779-827-6_14 |
0.773 |
|
| 2012 |
Sereda YV, Singharoy AB, Jarrold MF, Ortoleva PJ. Discovering free energy basins for macromolecular systems via guided multiscale simulation. The Journal of Physical Chemistry. B. 116: 8534-44. PMID 22423635 DOI: 10.1021/Jp2126174 |
0.635 |
|
| 2012 |
Pankavich SD, Ortoleva PJ. Nanosystem self-assembly pathways discovered via all-atom multiscale analysis. The Journal of Physical Chemistry. B. 116: 8355-62. PMID 22372746 DOI: 10.1021/Jp210407E |
0.375 |
|
| 2012 |
Singharoy A, Joshi H, Miao Y, Ortoleva PJ. Space warping order parameters and symmetry: application to multiscale simulation of macromolecular assemblies. The Journal of Physical Chemistry. B. 116: 8423-34. PMID 22356532 DOI: 10.1021/Jp2119247 |
0.733 |
|
| 2012 |
Singharoy A, Joshi H, Miao Y, Ortoleva PJ. Space warping order parameters and symmetry: Application to multiscale simulation of macromolecular assemblies Journal of Physical Chemistry B. 116: 8423-8434. DOI: 10.1021/jp2119247 |
0.665 |
|
| 2012 |
Singharoy A, Sereda Y, Ortoleva PJ. Hierarchical order parameters for macromolecular assembly simulations. 1. Construction and dynamical properties of order parameters Journal of Chemical Theory and Computation. 8: 1379-1392. DOI: 10.1021/ct200574x |
0.597 |
|
| 2011 |
Joshi H, Cheluvaraja S, Somogyi E, Brown DR, Ortoleva P. A molecular dynamics study of loop fluctuation in human papillomavirus type 16 virus-like particles: a possible indicator of immunogenicity. Vaccine. 29: 9423-30. PMID 22027487 DOI: 10.1016/J.Vaccine.2011.10.039 |
0.777 |
|
| 2011 |
Joshi H, Singharoy A, Sereda YV, Cheluvaraja SC, Ortoleva PJ. Multiscale simulation of microbe structure and dynamics Progress in Biophysics and Molecular Biology. 107: 200-217. PMID 21802438 DOI: 10.1016/J.Pbiomolbio.2011.07.006 |
0.689 |
|
| 2011 |
Shreif Z, Ortoleva P. Scaling behavior of quantum nanosystems: emergence of quasi-particles, collective modes, and mixed exchange symmetry states. The Journal of Chemical Physics. 134: 104106. PMID 21405155 DOI: 10.1063/1.3560450 |
0.773 |
|
| 2011 |
Singharoy A, Cheluvaraja S, Ortoleva P. Order parameters for macromolecules: application to multiscale simulation. The Journal of Chemical Physics. 134: 044104. PMID 21280684 DOI: 10.1063/1.3524532 |
0.687 |
|
| 2011 |
Shreif Z, Ortoleva P. Multiscale born-oppenheimer theory of collective electron-nuclear dynamics in nanosystems Journal of Theoretical and Computational Chemistry. 10: 605-614. DOI: 10.1142/S0219633611006669 |
0.753 |
|
| 2011 |
Singharoy A, Ortoleva P. Order Parameters for Multiscale Simulation of Bio-Nanosystems Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2389 |
0.669 |
|
| 2011 |
Joshi H, Ortoleva P. Thermal, Chemical and Mechanical Stability of HPV L1 VLP Vaccines: A Multiscale All-Atom Simulation Study Biophysical Journal. 100: 1-6. DOI: 10.1016/J.Bpj.2010.12.1285 |
0.337 |
|
| 2010 |
Miao Y, Johnson JE, Ortoleva PJ. All-atom multiscale simulation of cowpea chlorotic mottle virus capsid swelling. The Journal of Physical Chemistry. B. 114: 11181-95. PMID 20695471 DOI: 10.1021/Jp102314E |
0.569 |
|
| 2010 |
Singharoy A, Yesnik AM, Ortoleva P. Multiscale analytic continuation approach to nanosystem simulation: applications to virus electrostatics. The Journal of Chemical Physics. 132: 174112. PMID 20459161 DOI: 10.1063/1.3424771 |
0.635 |
|
| 2010 |
King EL, Tuncay K, Ortoleva P, Meile C. Modeling biogeochemical dynamics in porous media: Practical considerations of pore scale variability, reaction networks, and microbial population dynamics in a sandy aquifer Journal of Contaminant Hydrology. 112: 130-140. PMID 20097442 DOI: 10.1016/J.Jconhyd.2009.12.002 |
0.357 |
|
| 2010 |
Fan HJ, Perkins C, Ortoleva PJ. Scaling behavior of electronic excitations in assemblies of molecules with degenerate ground states. The Journal of Physical Chemistry. A. 114: 2213-20. PMID 20085246 DOI: 10.1021/Jp908441S |
0.374 |
|
| 2010 |
Qu K, Yesnik AM, Ortoleva PJ. Alternative splicing regulatory network reconstruction from exon array data Journal of Theoretical Biology. 263: 471-480. PMID 20043923 DOI: 10.1016/J.Jtbi.2009.12.025 |
0.5 |
|
| 2010 |
Miao Y, Ortoleva PJ. Viral structural transition mechanisms revealed by multiscale molecular dynamics/order parameter extrapolation simulation Biopolymers. 93: 61-73. PMID 19728362 DOI: 10.1002/Bip.21299 |
0.586 |
|
| 2010 |
Pankavich S, Ortoleva P. Multiscaling for systems with a broad continuum of characteristic lengths and times: Structural transitions in nanocomposites Journal of Mathematical Physics. 51. DOI: 10.1063/1.3420578 |
0.413 |
|
| 2010 |
Cheluvaraja S, Ortoleva P. Thermal nanostructure: An order parameter multiscale ensemble approach Journal of Chemical Physics. 132. DOI: 10.1063/1.3316793 |
0.39 |
|
| 2009 |
Shreif Z, Pankavich S, Ortoleva P. Liquid-crystal transitions: a first-principles multiscale approach. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 031703. PMID 19905127 DOI: 10.1103/Physreve.80.031703 |
0.775 |
|
| 2009 |
Pankavich S, Shreif Z, Miao Y, Ortoleva P. Self-assembly of nanocomponents into composite structures: derivation and simulation of Langevin equations. The Journal of Chemical Physics. 130: 194115. PMID 19466829 DOI: 10.1063/1.3134683 |
0.801 |
|
| 2009 |
Ortoleva P, Adhangale P, Cheluvaraja S, Fontus M, Shreif Z. Deriving principles of microbiology by multiscaling laws of molecular physics. Ieee Engineering in Medicine and Biology Magazine : the Quarterly Magazine of the Engineering in Medicine & Biology Society. 28: 70-9. PMID 19349253 DOI: 10.1109/Memb.2009.932389 |
0.757 |
|
| 2009 |
King EL, Tuncay K, Ortoleva P, Meile C. In silico geobacter sulfurreducens metabolism and its representation in reactive transport models Applied and Environmental Microbiology. 75: 83-92. PMID 19011077 DOI: 10.1128/Aem.01799-08 |
0.374 |
|
| 2009 |
Miao Y, Ortoleva PJ. Molecular dynamics/order parameter extrapolation for bionanosystem simulations Journal of Computational Chemistry. 30: 423-437. PMID 18636559 DOI: 10.1002/Jcc.21071 |
0.594 |
|
| 2009 |
Pankavich S, Shreif Z, Chen Y, Ortoleva P. Multiscale theory of finite-size Bose systems: Implications for collective and single-particle excitations Physical Review a - Atomic, Molecular, and Optical Physics. 79. DOI: 10.1103/Physreva.79.013628 |
0.751 |
|
| 2009 |
Shreif Z, Ortoleva P. Computer-aided design of nanocapsules for therapeutic delivery Computational and Mathematical Methods in Medicine. 10: 49-70. DOI: 10.1080/17486700802154593 |
0.762 |
|
| 2009 |
Shreif Z, Ortoleva P. Multiscale derivation of an augmented Smoluchowski equation Physica a: Statistical Mechanics and Its Applications. 388: 593-600. DOI: 10.1016/J.Physa.2008.11.008 |
0.747 |
|
| 2009 |
Shreif Z, Adhangale P, Cheluvaraja S, Perera R, Kuhn R, Ortoleva P. Enveloped viruses understood via multiscale simulation: Computer-aided vaccine design Lecture Notes in Computational Science and Engineering. 68: 363-380. DOI: 10.1007/S10820-008-9101-5 |
0.796 |
|
| 2008 |
Pankavich S, Miao Y, Ortoleva J, Shreif Z, Ortoleva P. Stochastic dynamics of bionanosystems: Multiscale analysis and specialized ensembles. The Journal of Chemical Physics. 128: 234908. PMID 18570529 DOI: 10.1063/1.2931572 |
0.817 |
|
| 2008 |
Ortoleva P, Iyengar SS. Multiscale theory of collective and quasiparticle modes in quantum nanosystems. The Journal of Chemical Physics. 128: 164716. PMID 18447488 DOI: 10.1063/1.2877226 |
0.338 |
|
| 2008 |
Qu K, Ortoleva P. Understanding stem cell differentiation through self-organization theory Journal of Theoretical Biology. 250: 606-620. PMID 18076908 DOI: 10.1016/J.Jtbi.2007.10.019 |
0.528 |
|
| 2008 |
Pankavich S, Shreif Z, Ortoleva P. Multiscaling for classical nanosystems: Derivation of Smoluchowski & Fokker-Planck equations Physica a: Statistical Mechanics and Its Applications. 387: 4053-4069. DOI: 10.1016/J.Physa.2008.03.008 |
0.763 |
|
| 2008 |
Shreif Z, Ortoleva P. Curvilinear all-atom multiscale (CAM) theory of macromolecular dynamics Journal of Statistical Physics. 130: 669-685. DOI: 10.1007/S10955-007-9452-4 |
0.778 |
|
| 2008 |
Adhangale P, Srinath C, Miao Y, Shreif Z, Ortoleva P. A multi-scale approach to bionanosystem simulation; applications to computer-aided vaccine design, nanocapsules for drug delivery and medical imaging Aiche Annual Meeting, Conference Proceedings. |
0.747 |
|
| 2008 |
Shreif Z, Ortoleva P. Multiscale approach to nanocapsule design Technical Proceedings of the 2008 Nsti Nanotechnology Conference and Trade Show, Nsti-Nanotech, Nanotechnology 2008. 3: 741-744. |
0.698 |
|
| 2008 |
Sayyed-Ahmad A, Miao Y, Ortoleva P. Poisson-Boltzmann theory of bionanosystems Communications in Computational Physics. 3: 1100-1116. |
0.708 |
|
| 2007 |
Qu K, Haidar AA, Fan J, Ensman L, Tuncay K, Jolly M, Ortoleva P. Cancer onset and progression: A genome-wide, nonlinear dynamical systems perspective on onconetworks Journal of Theoretical Biology. 246: 234-244. PMID 17289080 DOI: 10.1016/J.Jtbi.2006.12.002 |
0.553 |
|
| 2007 |
Sayyed-Ahmad A, Tuncay K, Ortoleva PJ. Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory Bmc Bioinformatics. 8. PMID 17244365 DOI: 10.1186/1471-2105-8-20 |
0.702 |
|
| 2006 |
Miao Y, Ortoleva PJ. Viral structural transitions: An all-atom multiscale theory Journal of Chemical Physics. 125. PMID 17166043 DOI: 10.1063/1.2400858 |
0.566 |
|
| 2006 |
Miao Y, Ortoleva P. All-atom multiscaling and new ensembles for dynamical nanoparticles. The Journal of Chemical Physics. 125: 44901. PMID 16942186 DOI: 10.1063/1.2218838 |
0.573 |
|
| 2006 |
Jarymowycz LB, Ortoleva PJ. Involatile nanodroplets: an asymptotic analysis. The Journal of Chemical Physics. 124: 234705. PMID 16821939 DOI: 10.1063/1.2204037 |
0.335 |
|
| 2006 |
Sheen DH, Tuncay K, Baag CE, Ortoleva PJ. Time domain Gauss-Newton seismic waveform inversion in elastic media Geophysical Journal International. 167: 1373-1384. DOI: 10.1111/J.1365-246X.2006.03162.X |
0.315 |
|
| 2005 |
Ortoleva PJ. Nanoparticle dynamics: A multiscale analysis of the liouville equation Journal of Physical Chemistry B. 109: 21258-21266. PMID 16853756 DOI: 10.1021/Jp051381B |
0.39 |
|
| 2004 |
Jaqaman K, Tuncay K, Ortoleva PJ. Classical density functional theory of orientational order at interfaces: application to water. The Journal of Chemical Physics. 120: 926-38. PMID 15267929 DOI: 10.1063/1.1630012 |
0.677 |
|
| 2004 |
Navid A, Ortoleva PJ. Simulated complex dynamics of glycolysis in the protozoan parasite Trypanosoma brucei Journal of Theoretical Biology. 228: 449-458. PMID 15178194 DOI: 10.1016/J.Jtbi.2004.02.007 |
0.689 |
|
| 2004 |
Sayyed-Ahmad A, Tuncay K, Ortoleva PJ. Efficient solution technique for solving the Poisson-Boltzmann equation Journal of Computational Chemistry. 25: 1068-1074. PMID 15067682 DOI: 10.1002/Jcc.20039 |
0.728 |
|
| 2004 |
Tuncay K, Ortoleva P. Quantitative basin modeling: Present state and future development towards predictability Geofluids. 4: 23-39. DOI: 10.1111/J.1468-8123.2004.00064.X |
0.342 |
|
| 2004 |
Tandon K, Tuncay K, Hubbard K, Comer J, Ortoleva P. Estimating tectonic history through basin simulation-enhanced seismic inversion: Geoinformatics for sedimentary basins Geophysical Journal International. 156: 129-139. DOI: 10.1111/J.1365-246X.2004.02126.X |
0.326 |
|
| 2004 |
Jaqaman K, Tuncay K, Ortoleva PJ. Classical density functional theory of orientational order at interfaces: Application to water Journal of Chemical Physics. 120: 926-938. DOI: 10.1063/1.1630012 |
0.642 |
|
| 2003 |
Weitzke EL, Ortoleva PJ. Simulating cellular dynamics through a coupled transcription, translation, metabolic model Computational Biology and Chemistry. 27: 469-480. PMID 14642755 DOI: 10.1016/J.Compbiolchem.2003.08.002 |
0.785 |
|
| 2003 |
Ortoleva P, Berry E, Brun Y, Fan J, Fontus M, Hubbard K, Jaqaman K, Jarymowycz L, Navid A, Sayyed-Ahmad A, Shreif Z, Stanley F, Tuncay K, Weitzke E, Wu LC. The Karyote physico-chemical genomic, proteomic, metabolic cell modeling system. Omics : a Journal of Integrative Biology. 7: 269-83. PMID 14583116 DOI: 10.1089/153623103322452396 |
0.753 |
|
| 2003 |
Sayyed-Ahmad A, Tuncay K, Ortoleva PJ. Toward automated cell model development through information theory Journal of Physical Chemistry A. 107: 10554-10565. DOI: 10.1021/Jp0302921 |
0.728 |
|
| 2002 |
Jaqaman K, Ortoleva PJ. New space warping method for the simulation of large-scale macromolecular conformational changes Journal of Computational Chemistry. 23: 484-491. PMID 11908085 DOI: 10.1002/Jcc.10040 |
0.69 |
|
| 2002 |
Ortoleva PJ, Tuncay K. ABSTRACT: Model Automated Informatics (MAI): Integration of Basin Simulation and Data Aapg Bulletin. 86. DOI: 10.1306/3Fef46F9-1741-11D7-8645000102C1865D |
0.32 |
|
| 2002 |
Tuncay K, Puckett J, Al-Shaeib Z, Ortoleva P. Pits, outgrowths, and inclusions as coated grain kinetic instabilities Geochimica Et Cosmochimica Acta. 66: 3901-3912. DOI: 10.1016/S0016-7037(02)00840-2 |
0.301 |
|
| 2001 |
Tuncay K, Ortoleva P. Salt tectonics as a self-organizing process: A reaction, transport, and mechanics model Journal of Geophysical Research B: Solid Earth. 106: 803-817. DOI: 10.1029/2000Jb900107 |
0.366 |
|
| 2001 |
Payne DF, Ortoleva PJ. A model for lignin alteration - Part II: Numerical model of natural gas generation and application to the Piceance Basin, Western Colorado Organic Geochemistry. 32: 1087-1101. DOI: 10.1016/S0146-6380(01)00081-X |
0.321 |
|
| 2001 |
Payne DF, Ortoleva PJ. A model for lignin alteration - Part I: A kinetic reaction-network model Organic Geochemistry. 32: 1073-1085. DOI: 10.1016/S0146-6380(01)00080-8 |
0.339 |
|
| 2000 |
Ozkan G, Ortoleva P. Mesoscopic model of nucleation and Ostwald ripening/stepping: Application to the silica polymorph system Journal of Chemical Physics. 112: 10510-10525. DOI: 10.1063/1.481685 |
0.339 |
|
| 2000 |
Ormond A, Ortoleva P. Numerical modeling of reaction-induced cavities in a porous rock Journal of Geophysical Research: Solid Earth. 105: 16737-16747. DOI: 10.1029/2000Jb900116 |
0.312 |
|
| 2000 |
Tuncay K, Park A, Ortoleva P. Sedimentary basin deformation: An incremental stress approach Tectonophysics. 323: 77-104. DOI: 10.1016/S0040-1951(00)00095-0 |
0.325 |
|
| 2000 |
Ozkan G, Ortoleva PJ. Evolution of the gouge particle size distribution: A Markov model Pure and Applied Geophysics. 157: 449-468. DOI: 10.1007/S000240050008 |
0.335 |
|
| 1998 |
Renard F, Gratier JP, Ortoleva P, Brosse E, Bazin B. Self-organization during reactive fluid flow in a porous medium Geophysical Research Letters. 25: 385-388. DOI: 10.1029/97Gl03781 |
0.326 |
|
| 1997 |
Ortoleva PJ. Glass transitions: A chemical kinetic/landau theory Journal of Physical Chemistry B. 101: 8324-8330. DOI: 10.1021/Jp962453P |
0.315 |
|
| 1997 |
Liu X, Ormond A, Bartko K, Ying L, Ortoleva P. A geochemical reaction-transport simulator for matrix acidizing analysis and design Journal of Petroleum Science and Engineering. 17: 181-196. DOI: 10.1016/S0920-4105(96)00064-2 |
0.309 |
|
| 1996 |
Liu X, Ortoleva P. A general-purpose, geochemical reservoir simulator Software - Practice and Experience. 211-222. DOI: 10.2118/36700-Ms |
0.347 |
|
| 1996 |
Liu X, Ortoleva P. A Coupled Reaction and Transport Model for Assessing the Injection, Migration and Fate of Waste Fluids Software - Practice and Experience. DOI: 10.2118/36640-Ms |
0.305 |
|
| 1996 |
Maxwell JM, Ortoleva PJ. Three dimensional basin modeling of overpressuring, mega-compartments, fracturing, and episodic fluid release Aapg Bulletin. 5. DOI: 10.1306/522B3489-1727-11D7-8645000102C1865D |
0.313 |
|
| 1995 |
Ortoleva P, Al-Shaieb Z, Puckette J. Genesis and dynamics of basin compartments and seals American Journal of Science. 295: 345-427. DOI: 10.2475/Ajs.295.4.345 |
0.309 |
|
| 1993 |
Ortoleva PJ, Parrish JT, Coleman ML. Self-Organization and Nonlinear Dynamics in Sedimentary Basins [and Discussion] Philosophical Transactions of the Royal Society A. 344: 171-179. DOI: 10.1098/Rsta.1993.0085 |
0.316 |
|
| 1993 |
Sultan R, Ortoleva P. Periodic and aperiodic macroscopic patterning in two precipitate post-nucleation systems Physica D: Nonlinear Phenomena. 63: 202-212. DOI: 10.1016/0167-2789(93)90155-T |
0.304 |
|
| 1991 |
Chadam J, Peirce A, Ortoleva P. Stability of reactive flows in porous media: coupled porosity and viscosity changes Siam Journal On Applied Mathematics. 51: 684-692. DOI: 10.1137/0151035 |
0.305 |
|
| 1990 |
Dewers T, Ortoleva P. Force of crystallization during the growth of siliceous concretions Geology. 18: 204-207. DOI: 10.1130/0091-7613(1990)018<0204:Focdtg>2.3.Co;2 |
0.307 |
|
| 1990 |
Ortoleva P, Sultan R. Static and propagating chemical spike structures and their electrical responses Chemical Physics. 148: 47-55. DOI: 10.1016/0301-0104(90)89005-B |
0.321 |
|
| 1990 |
Dewers T, Ortoleva P. Differentiated structures arising from mechano-chemical feedback in stressed rocks Earth Science Reviews. 29: 283-298. DOI: 10.1016/0012-8252(0)90043-U |
0.337 |
|
| 1990 |
Park A, Dewers T, Ortoleva P. Cellular and oscillatory self-induced methane migration Earth Science Reviews. 29: 249-265. DOI: 10.1016/0012-8252(0)90041-S |
0.336 |
|
| 1990 |
Wei C, Ortoleva P. Reaction front fingering in carbonate-cemented sandstones Earth Science Reviews. 29: 183-198. DOI: 10.1016/0012-8252(0)90036-U |
0.314 |
|
| 1990 |
Chadam J, Ortoleva P. Morphological instabilities in physico-chemical systems Earth Science Reviews. 29: 175-181. DOI: 10.1016/0012-8252(0)90035-T |
0.334 |
|
| 1989 |
Dewers T, Ortoleva PJ. Mechano-chemical coupling in stressed rocks Geochimica Et Cosmochimica Acta. 53: 1243-1258. DOI: 10.1016/0016-7037(89)90060-4 |
0.348 |
|
| 1988 |
Chadam J, Ortoleva P, Sen A. A weakly nonlinear stability analysis of the reactive infiltration interface Siam Journal On Applied Mathematics. 48: 1362-1378. DOI: 10.1137/0148084 |
0.336 |
|
| 1986 |
Auchmuty G, Chadam J, Merino E, Ortoleva P, Ripley E. The Structure and Stability of Propagating Redox Fronts Siam Journal On Applied Mathematics. 46: 588-604. DOI: 10.1137/0146040 |
0.304 |
|
| 1986 |
Chadam J, Hoff D, Merino E, Ortoleva P, Sen A. Reactive infiltration instabilities Ima Journal of Applied Mathematics (Institute of Mathematics and Its Applications). 36: 207-221. DOI: 10.1093/Imamat/36.3.207 |
0.312 |
|
| 1986 |
Ortoleva P, Auchmuty G, Chadam J, Hettmer J, Merino E, Moore CH, Ripley E. Redox front propagation and banding modalities Physica D: Nonlinear Phenomena. 19: 334-354. DOI: 10.1016/0167-2789(86)90063-1 |
0.305 |
|
| 1982 |
Larter R, Ortoleva P. A study of instability to electrical symmetry breaking in unicellular systems Journal of Theoretical Biology. 96: 175-200. DOI: 10.1016/0022-5193(82)90220-X |
0.317 |
|
| 1982 |
Ortoleva P. Solute reaction mediated precipitate patterns in cross gradient free systems Zeitschrift FüR Physik B Condensed Matter. 49: 149-156. DOI: 10.1007/Bf01314751 |
0.318 |
|
| 1981 |
Larter R, Ortoleva P. A theoretical basis for self-electrophoresis Journal of Theoretical Biology. 88: 599-630. PMID 7266010 DOI: 10.1016/0022-5193(81)90241-1 |
0.361 |
|
| 1981 |
Schmidt SL, Ortoleva P. Complicated pulse structure and chaotic fronts in multispecies self-induced transparency Physical Review A. 24: 967-974. DOI: 10.1103/Physreva.24.967 |
0.318 |
|
| 1980 |
Nitzan A, Ortoleva P. Scaling and Ginzburg criteria for critical bifurcations in nonequilibrium reacting systems Physical Review A. 21: 1735-1755. DOI: 10.1103/Physreva.21.1735 |
0.376 |
|
| 1979 |
Bose S, Ortoleva P. Reacting hard sphere dynamics: Liouville equation for condensed media Journal of Chemical Physics. 70: 3041-3056. DOI: 10.1063/1.437790 |
0.357 |
|
| 1979 |
Bose S, Ortoleva P. A hard sphere model of chemical reaction in condensed media Physics Letters A. 69: 367-369. DOI: 10.1016/0375-9601(79)90435-3 |
0.314 |
|
| 1979 |
DelleDonne M, Ortoleva P. Critical fluctuation universality in chemically oscillatory systems: A soluble master equation Journal of Statistical Physics. 20: 473-486. DOI: 10.1007/Bf01012895 |
0.368 |
|
| 1978 |
Ortoleva P, Delle Donne M. Turbulent Spatio-Temporal Dynamics in Reacting-Diffusing Systems: Results for a Soluble Model Zeitschrift Fur Naturforschung - Section a Journal of Physical Sciences. 33: 588-596. DOI: 10.1515/Zna-1978-0512 |
0.315 |
|
| 1978 |
DelleDonne M, Ortoleva P. Generalized nonlinear master equations for local fluctuations: Dimensionality expansions and augmented mean field theory Journal of Statistical Physics. 18: 319-331. DOI: 10.1007/Bf01018097 |
0.356 |
|
| 1977 |
DelleDonne M, Ortoleva P. Oscillations and runaway states in a closed illuminated system Journal of Chemical Physics. 67: 1861-1867. DOI: 10.1063/1.435143 |
0.32 |
|
| 1977 |
Feinn D, Ortoleva P. Catastrophe and propagation in chemical reactions Journal of Chemical Physics. 67: 2119-2131. DOI: 10.1063/1.435098 |
0.332 |
|
| 1976 |
Ortoleva P, Yip S. Computer molecular dynamics studies of a chemical instability Journal of Chemical Physics. 65: 2045-2051. DOI: 10.1063/1.433386 |
0.38 |
|
| 1976 |
Ortoleva P. Local phase and renormalized frequency in inhomogeneous chemioscillations Journal of Chemical Physics. 64: 1395-1406. DOI: 10.1063/1.432408 |
0.302 |
|
| 1975 |
Ortoleva P, Ross J. Theory of propagation of discontinuities in kinetic systems with multiple time scales: Fronts, front multiplicity, and pulses The Journal of Chemical Physics. 63: 3398-3408. DOI: 10.1063/1.431776 |
0.362 |
|
| 1974 |
Nitzan A, Ortoleva P, Deutch J, Ross J. Fluctuations and transitions at chemical instabilities: The analogy to phase transitions The Journal of Chemical Physics. 61: 1056-1074. DOI: 10.1063/1.1681974 |
0.305 |
|
| 1974 |
Nitzan A, Ortoleva P, Ross J. Symmetry breaking instabilities in illuminated systems The Journal of Chemical Physics. 60: 3134-3143. DOI: 10.1063/1.1681499 |
0.333 |
|
| 1974 |
Bimpong‐Bota K, Ortoleva P, Ross J. Far‐from‐equilibrium phenomena at local sites of reaction The Journal of Chemical Physics. 60: 3124-3133. DOI: 10.1063/1.1681498 |
0.341 |
|
| 1974 |
Nitzan A, Ortoleva P, Ross J. Nucleation in systems with multiple stationary states Faraday Symposia of the Chemical Society. 9: 241. DOI: 10.1039/Fs9740900241 |
0.355 |
|
| 1973 |
Ortoleva P, Ross J. A chemical instability mechanism for asymmetric cell differentiation. Biophysical Chemistry. 1: 87-96. PMID 4807784 DOI: 10.1016/0301-4622(73)80004-3 |
0.352 |
|
| 1973 |
Hahn HS, Ortoleva PJ, Ross J. Chemical oscillations and multiple steady states due to variable boundary permeability Journal of Theoretical Biology. 41: 503-521. PMID 4758116 DOI: 10.1016/0022-5193(73)90058-1 |
0.311 |
|
| 1973 |
Gilbert R, Ortoleva P, Ross J. Nonequilibrium relaxation methods. Acoustic effects in transient chemical reactions The Journal of Chemical Physics. 58: 3625-3633. DOI: 10.1063/1.1679710 |
0.324 |
|
| 1973 |
Ortoleva P, Ross J. Phase waves in oscillatory chemical reactions The Journal of Chemical Physics. 58: 5673-5680. DOI: 10.1063/1.1679191 |
0.324 |
|
| 1971 |
Ortoleva PJ, Ross J. Instabilities in Coupled Chemical Reactions with Pressure‐Dependent Rate Coefficients The Journal of Chemical Physics. 55: 4378-4390. DOI: 10.1063/1.1676763 |
0.317 |
|
| 1970 |
Ortoleva P, Nelkin M. Collective and Single-Particle Effects in Autocorrelation Functions for Dense Classical Fluids Physical Review A. 2: 187-195. DOI: 10.1103/Physreva.2.187 |
0.635 |
|
| 1969 |
Ortoleva P, Nelkin M. Fluctuations of the Single-Particle Distribution Function in Classical Fluids Physical Review. 181: 429-437. DOI: 10.1103/Physrev.181.429 |
0.636 |
|
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