| Year |
Citation |
Score |
| 2023 |
Sullivan B, Kitzmiller CE, Tran WC, Choudoir M, Simoes R, Dayarathne N, DeAngelis KM. Complete genome sequence of strain RC340, isolated from a temperate forest soil sample in New England. Microbiology Resource Announcements. e0060723. PMID 37905893 DOI: 10.1128/MRA.00607-23 |
0.758 |
|
| 2023 |
Eng AY, Narayanan A, Alster CJ, DeAngelis KM. Thermal adaptation of soil microbial growth traits in response to chronic warming. Applied and Environmental Microbiology. 89: e0082523. PMID 37877729 DOI: 10.1128/aem.00825-23 |
0.476 |
|
| 2023 |
Tran WC, Sullivan B, Kitzmiller CE, Choudoir M, Simoes R, Dayarathne N, DeAngelis KM. Draft genome sequence of sp. strain RC67, an isolate from a long-term forest soil warming experiment in Petersham, Massachusetts. Microbiology Resource Announcements. e0037323. PMID 37823651 DOI: 10.1128/MRA.00373-23 |
0.765 |
|
| 2023 |
Fisher T, Durmazolu F, DeAngelis KM, Morrow MA. Complete genome sequence of NP1, isolated from forest soil. Microbiology Resource Announcements. 12: e0058523. PMID 37732800 DOI: 10.1128/MRA.00585-23 |
0.413 |
|
| 2023 |
Kitzmiller CE, Tran WC, Sullivan B, Cortez F, Choudoir M, Simoes R, Dayarathne N, DeAngelis KM. High-quality genomes of spp. RC334 and RC343, isolated from a long-term forest soil warming experiment. Microbiology Resource Announcements. e0037123. PMID 37638734 DOI: 10.1128/MRA.00371-23 |
0.773 |
|
| 2022 |
Domeignoz-Horta LA, Pold G, Erb H, Sebag D, Verrecchia E, Northen T, Louie K, Eloe-Fadrosh E, Pennacchio C, Knorr MA, Frey SD, Melillo JM, DeAngelis KM. Substrate availability and not thermal-acclimation controls microbial temperature sensitivity response to long term warming. Global Change Biology. PMID 36448874 DOI: 10.1111/gcb.16544 |
0.456 |
|
| 2022 |
Choudoir MJ, DeAngelis KM. A framework for integrating microbial dispersal modes into soil ecosystem ecology. Iscience. 25: 103887. PMID 35243247 DOI: 10.1016/j.isci.2022.103887 |
0.781 |
|
| 2022 |
Ahmed H, DeAngelis KM, Morrow MA. Draft Genome Sequence of Leifsonia poae Strain BS71, Isolated from a Drought Microcosm. Microbiology Resource Announcements. 11: e0095121. PMID 34989599 DOI: 10.1128/mra.00951-21 |
0.476 |
|
| 2021 |
Domeignoz-Horta LA, Shinfuku M, Junier P, Poirier S, Verrecchia E, Sebag D, DeAngelis KM. Direct evidence for the role of microbial community composition in the formation of soil organic matter composition and persistence. Isme Communications. 1: 64. PMID 37938272 DOI: 10.1038/s43705-021-00071-7 |
0.503 |
|
| 2021 |
Roy Chowdhury P, Golas SM, Alteio LV, Stevens JTE, Billings AF, Blanchard JL, Melillo JM, DeAngelis KM. The Transcriptional Response of Soil Bacteria to Long-Term Warming and Short-Term Seasonal Fluctuations in a Terrestrial Forest. Frontiers in Microbiology. 12: 666558. PMID 34512564 DOI: 10.3389/fmicb.2021.666558 |
0.739 |
|
| 2021 |
Ishaq SL, Parada FJ, Wolf PG, Bonilla CY, Carney MA, Benezra A, Wissel E, Friedman M, DeAngelis KM, Robinson JM, Fahimipour AK, Manus MB, Grieneisen L, Dietz LG, Pathak A, et al. Introducing the Microbes and Social Equity Working Group: Considering the Microbial Components of Social, Environmental, and Health Justice. Msystems. e0047121. PMID 34313460 DOI: 10.1128/mSystems.00471-21 |
0.688 |
|
| 2020 |
Morrow MA, Pold G, DeAngelis KM. Draft Genome Sequence of a Terrestrial Planctomycete, sp. Strain GP187, Isolated from Forest Soil. Microbiology Resource Announcements. 9. PMID 33303655 DOI: 10.1128/MRA.00956-20 |
0.406 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... DeAngelis KM, et al. Author Correction: Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 33184503 DOI: 10.1038/s41564-020-00827-2 |
0.344 |
|
| 2020 |
DeAngelis KM, Pold G. Genome Sequences of sp. Strain MT45 and sp. Strain GAS493, Two Actinobacteria Isolated from Forest Soil. Microbiology Resource Announcements. 9. PMID 32943557 DOI: 10.1128/MRA.00614-20 |
0.485 |
|
| 2020 |
Domeignoz-Horta LA, Pold G, Liu XA, Frey SD, Melillo JM, DeAngelis KM. Microbial diversity drives carbon use efficiency in a model soil. Nature Communications. 11: 3684. PMID 32703952 DOI: 10.1038/S41467-020-17502-Z |
0.79 |
|
| 2020 |
Murray AE, Freudenstein J, Gribaldo S, Hatzenpichler R, Hugenholtz P, Kämpfer P, Konstantinidis KT, Lane CE, Papke RT, Parks DH, Rossello-Mora R, Stott MB, Sutcliffe IC, Thrash JC, Venter SN, ... ... DeAngelis KM, et al. Roadmap for naming uncultivated Archaea and Bacteria. Nature Microbiology. PMID 32514073 DOI: 10.1038/S41564-020-0733-X |
0.523 |
|
| 2020 |
Pold G, Domeignoz-Horta LA, Morrison EW, Frey SD, Sistla SA, DeAngelis KM. Carbon Use Efficiency and Its Temperature Sensitivity Covary in Soil Bacteria. Mbio. 11. PMID 31964725 DOI: 10.1128/Mbio.02293-19 |
0.457 |
|
| 2019 |
Steen AD, Crits-Christoph A, Carini P, DeAngelis KM, Fierer N, Lloyd KG, Cameron Thrash J. High proportions of bacteria and archaea across most biomes remain uncultured. The Isme Journal. PMID 31388130 DOI: 10.1038/S41396-019-0484-Y |
0.328 |
|
| 2019 |
Domeignoz-Horta LA, DeAngelis KM, Pold G. Draft Genome Sequence of Group 1 sp. Strain EB88, Isolated from Forest Soil. Microbiology Resource Announcements. 8. PMID 30637399 DOI: 10.1128/MRA.01464-18 |
0.416 |
|
| 2019 |
Pold G, Sistla SA, DeAngelis KM. Metabolic tradeoffs and heterogeneity in microbial responses to temperature determine the fate of litter carbon in a warmer world Biogeosciences Discussions. 1-25. DOI: 10.5194/Bg-2019-269 |
0.433 |
|
| 2019 |
Pold G, Sistla SA, DeAngelis KM. Metabolic tradeoffs and heterogeneity in microbial responses to temperature determine the fate of litter carbon in simulations of a warmer world Biogeosciences. 16: 4875-4888. DOI: 10.5194/Bg-16-4875-2019 |
0.436 |
|
| 2018 |
Pold G, Huntemann M, Pillay M, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Kyrpides N, Woyke T, DeAngelis KM. Draft Genome Sequences of Three Strains of a Novel Rhizobiales Species Isolated from Forest Soil. Genome Announcements. 6. PMID 29437089 DOI: 10.1128/Genomea.01452-17 |
0.525 |
|
| 2018 |
Pold G, Conlon EM, Huntemann M, Pillay M, Mikhailova N, Stamatis D, Reddy TBK, Daum C, Shapiro N, Kyrpides N, Woyke T, DeAngelis KM. Genome Sequence of Verrucomicrobium sp. Strain GAS474, a Novel Bacterium Isolated from Soil. Genome Announcements. 6. PMID 29371348 DOI: 10.1128/Genomea.01451-17 |
0.515 |
|
| 2017 |
Orellana R, Chaput G, Markillie LM, Mitchell H, Gaffrey M, Orr G, DeAngelis KM. Multi-time series RNA-seq analysis of Enterobacter lignolyticus SCF1 during growth in lignin-amended medium. Plos One. 12: e0186440. PMID 29049419 DOI: 10.1371/Journal.Pone.0186440 |
0.371 |
|
| 2017 |
Bailey VL, Bond-Lamberty B, DeAngelis K, Grandy AS, Hawkes CV, Heckman K, Lajtha K, Phillips RP, Sulman BN, Todd-Brown KEO, Wallenstein MD. Soil carbon cycling proxies: Understanding their critical role in predicting climate change feedbacks. Global Change Biology. PMID 28991399 DOI: 10.1111/Gcb.13926 |
0.551 |
|
| 2017 |
Melillo JM, Frey SD, DeAngelis KM, Werner WJ, Bernard MJ, Bowles FP, Pold G, Knorr MA, Grandy AS. Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world. Science (New York, N.Y.). 358: 101-105. PMID 28983050 DOI: 10.1126/Science.Aan2874 |
0.546 |
|
| 2017 |
Jiménez DJ, Dini-Andreote F, DeAngelis KM, Singer SW, Salles JF, van Elsas JD. Ecological Insights into the Dynamics of Plant Biomass-Degrading Microbial Consortia. Trends in Microbiology. PMID 28648267 DOI: 10.1016/J.Tim.2017.05.012 |
0.344 |
|
| 2017 |
Woo HL, DeAngelis KM, Teshima H, Davenport K, Daligault H, Erkkila T, Goodwin L, Gu W, Lo CC, Munk C, Scholz M, Xu Y, Chain P, Bruce D, Detter C, et al. High-Quality Draft Genome Sequences of Four Lignocellulose-Degrading Bacteria Isolated from Puerto Rican Forest Soil: Gordonia sp., Paenibacillus sp., Variovorax sp., and Vogesella sp. Genome Announcements. 5. PMID 28473393 DOI: 10.1128/Genomea.00300-17 |
0.442 |
|
| 2017 |
Pold G, Grandy AS, Melillo JM, DeAngelis KM. Changes in substrate availability drive carbon cycle response to chronic warming Soil Biology and Biochemistry. 110: 68-78. DOI: 10.1016/J.Soilbio.2017.03.002 |
0.561 |
|
| 2016 |
Pold G, Billings AF, Blanchard JL, Burkhardt DB, Frey SD, Melillo JM, Schnabel J, van Diepen LT, DeAngelis KM. Long-term warming alters carbohydrate degradation potential in temperate forest soils. Applied and Environmental Microbiology. PMID 27590813 DOI: 10.1128/Aem.02012-16 |
0.61 |
|
| 2016 |
DeAngelis KM. Chemical communication connects soil food webs Soil Biology and Biochemistry. 102: 48-51. DOI: 10.1016/J.Soilbio.2016.06.024 |
0.422 |
|
| 2016 |
Hall SJ, Liptzin D, Buss HL, DeAngelis K, Silver WL. Drivers and patterns of iron redox cycling from surface to bedrock in a deep tropical forest soil: a new conceptual model Biogeochemistry. 130: 177-190. DOI: 10.1007/S10533-016-0251-3 |
0.42 |
|
| 2015 |
Billings AF, Fortney JL, Hazen TC, Simmons B, Davenport KW, Goodwin L, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, DeAngelis KM. Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov. Standards in Genomic Sciences. 10: 106. PMID 26594307 DOI: 10.1186/S40793-015-0100-3 |
0.413 |
|
| 2015 |
Pold G, Melillo JM, DeAngelis KM. Two decades of warming increases diversity of a potentially lignolytic bacterial community. Frontiers in Microbiology. 6: 480. PMID 26042112 DOI: 10.3389/Fmicb.2015.00480 |
0.619 |
|
| 2015 |
DeAngelis KM, Pold G, Topçuo?lu BD, van Diepen LT, Varney RM, Blanchard JL, Melillo J, Frey SD. Long-term forest soil warming alters microbial communities in temperate forest soils. Frontiers in Microbiology. 6: 104. PMID 25762989 DOI: 10.3389/Fmicb.2015.00104 |
0.606 |
|
| 2014 |
Woo HL, Ballor NR, Hazen TC, Fortney JL, Simmons B, Davenport KW, Goodwin L, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, Jansson J, Kimbrel J, DeAngelis KM. Complete genome sequence of the lignin-degrading bacterium Klebsiella sp. strain BRL6-2. Standards in Genomic Sciences. 9: 19. PMID 25566348 DOI: 10.1186/1944-3277-9-19 |
0.49 |
|
| 2014 |
Woo HL, Utturkar S, Klingeman D, Simmons BA, DeAngelis KM, Brown SD, Hazen TC. Draft Genome Sequence of the Lignin-Degrading Burkholderia sp. Strain LIG30, Isolated from Wet Tropical Forest Soil. Genome Announcements. 2. PMID 24948777 DOI: 10.1128/Genomea.00637-14 |
0.541 |
|
| 2014 |
Woo HL, Hazen TC, Simmons BA, DeAngelis KM. Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils. Systematic and Applied Microbiology. 37: 60-7. PMID 24238986 DOI: 10.1016/J.Syapm.2013.10.001 |
0.498 |
|
| 2013 |
Deangelis KM, Sharma D, Varney R, Simmons B, Isern NG, Markilllie LM, Nicora C, Norbeck AD, Taylor RC, Aldrich JT, Robinson EW. Evidence supporting dissimilatory and assimilatory lignin degradation in Enterobacter lignolyticus SCF1. Frontiers in Microbiology. 4: 280. PMID 24065962 DOI: 10.3389/Fmicb.2013.00280 |
0.442 |
|
| 2013 |
Deangelis KM, D'Haeseleer P, Chivian D, Simmons B, Arkin AP, Mavromatis K, Malfatti S, Tringe S, Hazen TC. Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron. Standards in Genomic Sciences. 7: 382-98. PMID 24019987 DOI: 10.4056/Sigs.3377516 |
0.435 |
|
| 2013 |
Pold G, DeAngelis KM. Up against the wall: The effects of climate warming on soil microbial diversity and the potential for feedbacks to the carbon cycle Diversity. 5: 409-425. DOI: 10.3390/D5020409 |
0.544 |
|
| 2013 |
DeAngelis KM, Chivian D, Fortney JL, Arkin AP, Simmons B, Hazen TC, Silver WL. Changes in microbial dynamics during long-term decomposition in tropical forests Soil Biology and Biochemistry. 66: 60-68. DOI: 10.1016/J.Soilbio.2013.06.010 |
0.611 |
|
| 2013 |
Deangelis KM. Rhizosphere Microbial Communication in Soil Nutrient Acquisition Molecular Microbial Ecology of the Rhizosphere. 2: 823-832. DOI: 10.1002/9781118297674.ch78 |
0.506 |
|
| 2012 |
Khudyakov JI, D'haeseleer P, Borglin SE, Deangelis KM, Woo H, Lindquist EA, Hazen TC, Simmons BA, Thelen MP. Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus. Proceedings of the National Academy of Sciences of the United States of America. 109: E2173-82. PMID 22586090 DOI: 10.1073/Pnas.1112750109 |
0.394 |
|
| 2012 |
DeAngelis KM, Fortney JL, Borglin S, Silver WL, Simmons BA, Hazen TC. Anaerobic decomposition of switchgrass by tropical soil-derived feedstock-adapted consortia. Mbio. 3. PMID 22354956 DOI: 10.1128/Mbio.00249-11 |
0.602 |
|
| 2012 |
DeAngelis KM, Firestone MK. Phylogenetic clustering of soil microbial communities by 16S rRNA but not 16S rRNA genes. Applied and Environmental Microbiology. 78: 2459-61. PMID 22286992 DOI: 10.1128/Aem.07547-11 |
0.632 |
|
| 2012 |
Borglin S, Joyner D, DeAngelis KM, Khudyakov J, D'haeseleer P, Joachimiak MP, Hazen T. Application of phenotypic microarrays to environmental microbiology. Current Opinion in Biotechnology. 23: 41-8. PMID 22217654 DOI: 10.1016/J.Copbio.2011.12.006 |
0.307 |
|
| 2011 |
Deangelis KM, D'Haeseleer P, Chivian D, Fortney JL, Khudyakov J, Simmons B, Woo H, Arkin AP, Davenport KW, Goodwin L, Chen A, Ivanova N, Kyrpides NC, Mavromatis K, Woyke T, et al. Complete genome sequence of "Enterobacter lignolyticus" SCF1. Standards in Genomic Sciences. 5: 69-85. PMID 22180812 DOI: 10.4056/Sigs.2104875 |
0.529 |
|
| 2011 |
Mackelprang R, Waldrop MP, DeAngelis KM, David MM, Chavarria KL, Blazewicz SJ, Rubin EM, Jansson JK. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature. 480: 368-71. PMID 22056985 DOI: 10.1038/Nature10576 |
0.778 |
|
| 2011 |
DeAngelis KM, Wu CH, Beller HR, Brodie EL, Chakraborty R, DeSantis TZ, Fortney JL, Hazen TC, Osman SR, Singer ME, Tom LM, Andersen GL. PCR amplification-independent methods for detection of microbial communities by the high-density microarray PhyloChip. Applied and Environmental Microbiology. 77: 6313-22. PMID 21764955 DOI: 10.1128/Aem.05262-11 |
0.461 |
|
| 2011 |
Shi S, Richardson AE, O'Callaghan M, DeAngelis KM, Jones EE, Stewart A, Firestone MK, Condron LM. Effects of selected root exudate components on soil bacterial communities. Fems Microbiology Ecology. 77: 600-10. PMID 21658090 DOI: 10.1111/J.1574-6941.2011.01150.X |
0.713 |
|
| 2011 |
DeAngelis KM, Allgaier M, Chavarria Y, Fortney JL, Hugenholtz P, Simmons B, Sublette K, Silver WL, Hazen TC. Characterization of trapped lignin-degrading microbes in tropical forest soil. Plos One. 6: e19306. PMID 21559391 DOI: 10.1371/Journal.Pone.0019306 |
0.567 |
|
| 2010 |
DeAngelis KM, Silver WL, Thompson AW, Firestone MK. Microbial communities acclimate to recurring changes in soil redox potential status. Environmental Microbiology. 12: 3137-49. PMID 20629704 DOI: 10.1111/J.1462-2920.2010.02286.X |
0.646 |
|
| 2010 |
DeAngelis KM, Gladden JM, Allgaier M, D'haeseleer P, Fortney JL, Reddy A, Hugenholtz P, Singer SW, Vander Gheynst JS, Silver WL, Simmons BA, Hazen TC. Strategies for enhancing the effectiveness of metagenomic-based enzyme discovery in lignocellulolytic microbial communities Bioenergy Research. 3: 146-158. DOI: 10.1007/S12155-010-9089-Z |
0.498 |
|
| 2009 |
Sagaram US, DeAngelis KM, Trivedi P, Andersen GL, Lu SE, Wang N. Bacterial diversity analysis of Huanglongbing pathogen-infected citrus, using PhyloChip arrays and 16S rRNA gene clone library sequencing. Applied and Environmental Microbiology. 75: 1566-74. PMID 19151177 DOI: 10.1128/Aem.02404-08 |
0.391 |
|
| 2009 |
DeAngelis KM, Brodie EL, DeSantis TZ, Andersen GL, Lindow SE, Firestone MK. Selective progressive response of soil microbial community to wild oat roots. The Isme Journal. 3: 168-78. PMID 19005498 DOI: 10.1038/Ismej.2008.103 |
0.77 |
|
| 2008 |
DeAngelis KM, Lindow SE, Firestone MK. Bacterial quorum sensing and nitrogen cycling in rhizosphere soil. Fems Microbiology Ecology. 66: 197-207. PMID 18721146 DOI: 10.1111/J.1574-6941.2008.00550.X |
0.748 |
|
| 2008 |
Templer PH, Silver WL, Pett-Ridge J, DeAngelis KM, Firestone MK. Plant and microbial controls on nitrogen retention and loss in a humid tropical forest Ecology. 89: 3030-3040. DOI: 10.1890/07-1631.1 |
0.644 |
|
| 2007 |
DeAngelis KM, Firestone MK, Lindow SE. Sensitive whole-cell biosensor suitable for detecting a variety of N-acyl homoserine lactones in intact rhizosphere microbial communities. Applied and Environmental Microbiology. 73: 3724-7. PMID 17400771 DOI: 10.1128/Aem.02187-06 |
0.749 |
|
| 2007 |
Hawkes CV, DeAngelis KM, Firestone MK. Root Interactions with Soil Microbial Communities and Processes The Rhizosphere. 1-29. DOI: 10.1016/B978-012088775-0/50003-3 |
0.651 |
|
| 2005 |
DeAngelis KM, Ji P, Firestone MK, Lindow SE. Two novel bacterial biosensors for detection of nitrate availability in the rhizosphere. Applied and Environmental Microbiology. 71: 8537-47. PMID 16332845 DOI: 10.1128/Aem.71.12.8537-8547.2005 |
0.672 |
|
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