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Jessica M. Swanson - Publications

Affiliations: 
2006 University of California, San Diego, La Jolla, CA 
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10 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Lee S, Liang R, Voth GA, Swanson JM. Computationally Efficient Multiscale Reactive Molecular Dynamics to Describe Amino Acid Deprotonation in Proteins. Journal of Chemical Theory and Computation. PMID 26734942 DOI: 10.1021/Acs.Jctc.5B01109  0.35
2014 Nelson JG, Peng Y, Silverstein DW, Swanson JM. Multiscale Reactive Molecular Dynamics for Absolute pK a Predictions and Amino Acid Deprotonation. Journal of Chemical Theory and Computation. 10: 2729-2737. PMID 25061442 DOI: 10.1021/Ct500250F  0.64
2011 Izvekov S, Swanson JM. Using force-matching to reveal essential differences between density functionals in ab initio molecular dynamics simulations. The Journal of Chemical Physics. 134: 194109. PMID 21599046 DOI: 10.1063/1.3591374  0.302
2007 Swanson JM, Wagoner JA, Baker NA, McCammon JA. Optimizing the Poisson Dielectric Boundary with Explicit Solvent Forces and Energies:  Lessons Learned with Atom-Centered Dielectric Functions. Journal of Chemical Theory and Computation. 3: 170-83. PMID 26627162 DOI: 10.1021/ct600216k  0.627
2006 Dzubiella J, Swanson JM, McCammon JA. Coupling hydrophobicity, dispersion, and electrostatics in continuum solvent models. Physical Review Letters. 96: 087802. PMID 16606226 DOI: 10.1103/Physrevlett.96.087802  0.622
2006 Dzubiella J, Swanson JM, McCammon JA. Coupling nonpolar and polar solvation free energies in implicit solvent models. The Journal of Chemical Physics. 124: 084905. PMID 16512740 DOI: 10.1063/1.2171192  0.622
2005 Swanson JM, Adcock SA, McCammon JA. Optimized Radii for Poisson-Boltzmann Calculations with the AMBER Force Field. Journal of Chemical Theory and Computation. 1: 484-93. PMID 26641515 DOI: 10.1021/Ct049834O  0.535
2005 Swanson JM, Mongan J, McCammon JA. Limitations of atom-centered dielectric functions in implicit solvent models. The Journal of Physical Chemistry. B. 109: 14769-72. PMID 16852866 DOI: 10.1021/Jp052883S  0.64
2005 Minh DD, Bui JM, Chang CE, Jain T, Swanson JM, McCammon JA. The entropic cost of protein-protein association: a case study on acetylcholinesterase binding to fasciculin-2. Biophysical Journal. 89: L25-7. PMID 16100267 DOI: 10.1529/Biophysj.105.069336  0.623
2004 Swanson JM, Henchman RH, McCammon JA. Revisiting free energy calculations: a theoretical connection to MM/PBSA and direct calculation of the association free energy. Biophysical Journal. 86: 67-74. PMID 14695250 DOI: 10.1016/S0006-3495(04)74084-9  0.671
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