Daniel Harries - Publications

Affiliations: 
Chemistry Hebrew University, Jerusalem, Jerusalem, Israel 

88 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Garfagnini T, Bemporad F, Harries D, Chiti F, Friedler A. Amyloid Aggregation Is Potently Slowed Down by Osmolytes Due to Compaction of Partially Folded State. Journal of Molecular Biology. 435: 168281. PMID 37734431 DOI: 10.1016/j.jmb.2023.168281  0.552
2022 Shakhman Y, Shumilin I, Harries D. Urea counteracts trimethylamine N-oxide (TMAO) compaction of lipid membranes by modifying van der Waals interactions. Journal of Colloid and Interface Science. 629: 165-172. PMID 36063634 DOI: 10.1016/j.jcis.2022.08.123  0.302
2022 Speer SL, Stewart CJ, Sapir L, Harries D, Pielak GJ. Macromolecular Crowding Is More than Hard-Core Repulsions. Annual Review of Biophysics. 51: 267-300. PMID 35239418 DOI: 10.1146/annurev-biophys-091321-071829  0.662
2021 Olgenblum GI, Wien F, Sapir L, Harries D. β-Hairpin Miniprotein Stabilization in Trehalose Glass Is Facilitated by an Emergent Compact Non-Native State. The Journal of Physical Chemistry Letters. 7659-7664. PMID 34351767 DOI: 10.1021/acs.jpclett.1c02379  0.649
2021 Garfagnini T, Levi-Kalisman Y, Harries D, Friedler A. Osmolytes and crowders regulate aggregation of the cancer-related L106R mutant of the Axin protein. Biophysical Journal. PMID 34087214 DOI: 10.1016/j.bpj.2021.05.024  0.527
2020 Fink L, Allolio C, Feitelson J, Tamburu C, Harries D, Raviv U. Bridges of Calcium Bicarbonate Tightly Couple Dipolar Lipid Membranes. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 32787004 DOI: 10.1021/Acs.Langmuir.0C01511  0.385
2020 Schachter I, Allolio C, Khelashvili G, Harries D. Confinement in Nanodiscs Anisotropically Modifies Lipid Bilayer Elastic Properties. The Journal of Physical Chemistry. B. PMID 32697588 DOI: 10.1021/Acs.Jpcb.0C03374  0.373
2020 Sapir L, Harries D. Restructuring a Deep Eutectic Solvent by Water: The Nanostructure of Hydrated Choline Chloride/Urea. Journal of Chemical Theory and Computation. PMID 32223260 DOI: 10.1021/Acs.Jctc.0C00120  0.693
2020 Olgenblum GI, Sapir L, Harries D. Properties of Aqueous Trehalose Mixtures: Glass Transition and Hydrogen Bonding. Journal of Chemical Theory and Computation. PMID 31917927 DOI: 10.1021/Acs.Jctc.9B01071  0.69
2020 Shumilin I, Bogoslavsky B, Harries D. Stressing crystals with solutes: Effects of added solutes on crystalline caffeine and their relevance to determining transfer free energies Colloids and Surfaces a: Physicochemical and Engineering Aspects. 599: 124889. DOI: 10.1016/J.Colsurfa.2020.124889  0.363
2019 Shumilin I, Allolio C, Harries D. How Sugars Modify Caffeine Self-Association and Solubility: Resolving a Mechanism of Selective Hydrotropy. Journal of the American Chemical Society. PMID 31619038 DOI: 10.1021/Jacs.9B07056  0.326
2019 Sukenik S, Dunsky S, Allolio C, Barnoy A, Shumilin I, Harries D. How Osmolytes Modulate Lipid Interactions Biophysical Journal. 116: 318a. DOI: 10.1016/J.Bpj.2018.11.1720  0.317
2018 Doktorova M, Harries D, Khelashvili G. Determination of bending rigidity and tilt modulus of lipid membranes from real-space fluctuation analysis of molecular dynamics simulations. Physical Chemistry Chemical Physics : Pccp. 19: 16806-16818. PMID 28627570 DOI: 10.1039/C7Cp01921A  0.351
2018 Allolio C, Haluts A, Harries D. A local instantaneous surface method for extracting membrane elastic moduli from simulation: Comparison with other strategies Chemical Physics. 514: 31-43. DOI: 10.1016/J.Chemphys.2018.03.004  0.337
2017 Sukenik S, Dunsky S, Barnoy A, Shumilin I, Harries D. TMAO mediates effective attraction between lipid membranes by partitioning unevenly between bulk and lipid domains. Physical Chemistry Chemical Physics : Pccp. PMID 29110014 DOI: 10.1039/C7Cp04603K  0.412
2017 Poplinger M, Shumilin I, Harries D. Impact of trehalose on the activity of sodium and potassium chloride in aqueous solutions: Why trehalose is worth its salt. Food Chemistry. 237: 1209-1215. PMID 28763971 DOI: 10.1016/J.Foodchem.2017.06.047  0.363
2017 Sapir L, Harries D. Revisiting Hydrogen Bond Thermodynamics in Molecular Simulations. Journal of Chemical Theory and Computation. PMID 28489952 DOI: 10.1021/Acs.Jctc.7B00238  0.655
2017 Sapir L, Harries D. How do Cosolutes Stabilize Macromolecules? From Bridging to Depletion Attraction Biophysical Journal. 112: 195a. DOI: 10.1016/J.Bpj.2016.11.1081  0.634
2016 Meirzadeh E, Sapir L, Cohen H, Cohen SR, Ehre D, Harries D, Lahav M, Lubomirsky I. Nonclassical Crystal Growth as Explanation for the Riddle of Polarity in Centrosymmetric Glycine Crystals. Journal of the American Chemical Society. PMID 27779856 DOI: 10.1021/Jacs.6B09190  0.625
2016 Johner N, Harries D, Khelashvili G. Implementation of a methodology for determining elastic properties of lipid assemblies from molecular dynamics simulations. Bmc Bioinformatics. 17: 161. PMID 27071656 DOI: 10.1186/S12859-016-1003-Z  0.328
2016 Sapir L, Stanley CB, Harries D. Properties of Polyvinylpyrrolidone in a Deep Eutectic Solvent. The Journal of Physical Chemistry. A. PMID 26963367 DOI: 10.1021/Acs.Jpca.5B11927  0.748
2016 Sapir L, Harries D. Macromolecular compaction by mixed solutions: Bridging versus depletion attraction Current Opinion in Colloid & Interface Science. 22: 80-87. DOI: 10.1016/J.Cocis.2016.02.010  0.708
2016 Kulig W, Olzynska A, Jurkiewicz P, Kantola AM, Manna M, Pourmousa M, Vazdar M, Cwiklik L, Rog T, Khelashvili G, Harries D, Telkki V, Hof M, Vattulainen I, Jungwirth P. Oxidation of Cholesterol Changes the Physical Properties of Lipid Membranes Biophysical Journal. 110: 84a. DOI: 10.1016/J.Bpj.2015.11.512  0.316
2016 Sapir L, Harries D. Thermodynamic Mechanism of Protein Stabilization: Crowders vs. Osmolytes Biophysical Journal. 110: 212a-213a. DOI: 10.1016/J.Bpj.2015.11.1181  0.695
2015 Sukenik S, Sapir L, Harries D. Osmolyte Induced Changes in Peptide Conformational Ensemble Correlate with Slower Amyloid Aggregation: A Coarse-Grained Simulation Study. Journal of Chemical Theory and Computation. PMID 26587669 DOI: 10.1021/Acs.Jctc.5B00657  0.672
2015 Sapir L, Harries D. Macromolecular Stabilization by Excluded Cosolutes: Mean Field Theory of Crowded Solutions. Journal of Chemical Theory and Computation. 11: 3478-90. PMID 26575781 DOI: 10.1021/Acs.Jctc.5B00258  0.708
2015 Kulig W, Ol?y?ska A, Jurkiewicz P, Kantola AM, Komulainen S, Manna M, Pourmousa M, Vazdar M, Cwiklik L, Rog T, Khelashvili G, Harries D, Telkki VV, Hof M, Vattulainen I, et al. Cholesterol under oxidative stress-How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols. Free Radical Biology & Medicine. 84: 30-41. PMID 25795515 DOI: 10.1016/J.Freeradbiomed.2015.03.006  0.32
2015 Sapir L, Harries D. Is the depletion force entropic? Molecular crowding beyond steric interactions Current Opinion in Colloid and Interface Science. 20: 3-10. DOI: 10.1016/J.Cocis.2014.12.003  0.699
2015 Harries D, Sapir L. Crowding and the Origin of Enthalpic Depletion Forces in Protein Interactions Biophysical Journal. 108: 51a-52a. DOI: 10.1016/J.Bpj.2014.11.315  0.723
2015 Johner NB, Harries D, Khelashvili G. Determining Material Elastic Properties of Arbitrarily-Shaped Membranes using Molecular Dynamics Simulations with Application to the Inverted Hexagonal Phase Biophysical Journal. 108: 182a. DOI: 10.1016/J.Bpj.2014.11.1004  0.354
2014 Johner N, Harries D, Khelashvili G. Curvature and Lipid Packing Modulate the Elastic Properties of Lipid Assemblies: Comparing HII and Lamellar Phases. The Journal of Physical Chemistry Letters. 5: 4201-6. PMID 26278954 DOI: 10.1021/Jz5022284  0.357
2014 Sapir L, Harries D. Origin of Enthalpic Depletion Forces. The Journal of Physical Chemistry Letters. 5: 1061-5. PMID 26274449 DOI: 10.1021/jz5002715  0.675
2014 Sukenik S, Boyarski Y, Harries D. Effect of salt on the formation of salt-bridges in β-hairpin peptides. Chemical Communications (Cambridge, England). 50: 8193-6. PMID 24926740 DOI: 10.1039/C4Cc03195D  0.35
2014 Khelashvili G, Johner N, Zhao G, Harries D, Scott HL. Molecular origins of bending rigidity in lipids with isolated and conjugated double bonds: the effect of cholesterol. Chemistry and Physics of Lipids. 178: 18-26. PMID 24394210 DOI: 10.1016/J.Chemphyslip.2013.12.012  0.383
2014 Sapir L, Harries D. Origin of enthalpic depletion forces Journal of Physical Chemistry Letters. 5: 1061-1065. DOI: 10.1016/J.Bpj.2013.11.3719  0.693
2014 Kollmitzer B, Heftberger P, Rappolt M, Khelashvili G, Harries D, Pabst G. Protein Partitioning in Liquid-Ordered (LO) / Liquid-Disordered (LD) Domains Depends on Lipid Composition and Protein Shape Biophysical Journal. 106: 510a. DOI: 10.1016/J.Bpj.2013.11.2853  0.341
2013 Khelashvili G, Kollmitzer B, Heftberger P, Pabst G, Harries D. Calculating the Bending Modulus for Multicomponent Lipid Membranes in Different Thermodynamic Phases. Journal of Chemical Theory and Computation. 9: 3866-3871. PMID 24039553 DOI: 10.1021/Ct400492E  0.328
2013 Sukenik S, Sapir L, Gilman-Politi R, Harries D. Diversity in the mechanisms of cosolute action on biomolecular processes. Faraday Discussions. 160: 225-37; discussion 3. PMID 23795502 DOI: 10.1039/C2Fd20101A  0.683
2013 Khelashvili G, Harries D. How cholesterol tilt modulates the mechanical properties of saturated and unsaturated lipid membranes. The Journal of Physical Chemistry. B. 117: 2411-21. PMID 23323733 DOI: 10.1021/Jp3122006  0.347
2013 Khelashvili G, Harries D. How sterol tilt regulates properties and organization of lipid membranes and membrane insertions. Chemistry and Physics of Lipids. 169: 113-23. PMID 23291283 DOI: 10.1016/J.Chemphyslip.2012.12.006  0.373
2013 Saper G, Kler S, Asor R, Oppenheim A, Raviv U, Harries D. Effect of capsid confinement on the chromatin organization of the SV40 minichromosome. Nucleic Acids Research. 41: 1569-80. PMID 23258701 DOI: 10.1093/Nar/Gks1270  0.31
2013 Harries D, May S, Ben-Shaul A. Counterion release in membrane-biopolymer interactions Soft Matter. 9: 9268-9284. DOI: 10.1039/C3Sm51419F  0.416
2013 Moshe L, Saper G, Szekely O, Linde Y, Gilon C, Harries D, Raviv U. Modulating the structure and interactions of lipid-peptide complexes by varying membrane composition and solution conditions Soft Matter. 9: 7117-7126. DOI: 10.1039/C3Sm00105A  0.367
2013 Sukenik S, Sapir L, Harries D. Balance of enthalpy and entropy in depletion forces Current Opinion in Colloid and Interface Science. 18: 495-501. DOI: 10.1016/J.Cocis.2013.10.002  0.716
2013 Sukenik S, Harries D. Control of Amyloid Fibril Assembly by Cosolutes Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.316  0.329
2013 Sukenik S, Sapir L, Gilman-Politi R, Harries D. Thermodynamic Fingerprints Reveal Variability in Cosolute Effect on Peptide Folding Biophysical Journal. 104: 564a. DOI: 10.1016/J.Bpj.2012.11.3126  0.688
2012 Sukenik S, Harries D. Insights into the disparate action of osmolytes and macromolecular crowders on amyloid formation. Prion. 6: 26-31. PMID 22453174 DOI: 10.4161/Pri.6.1.18132  0.329
2011 Gilman-Politi R, Harries D. Unraveling the Molecular Mechanism of Enthalpy Driven Peptide Folding by Polyol Osmolytes. Journal of Chemical Theory and Computation. 7: 3816-28. PMID 26598272 DOI: 10.1021/Ct200455N  0.377
2011 Khelashvili G, Rappolt M, Chiu SW, Pabst G, Harries D. Impact of sterol tilt on membrane bending rigidity in cholesterol and 7DHC-containing DMPC membranes. Soft Matter. 7: 10299-10312. PMID 23173009 DOI: 10.1039/C1Sm05937H  0.343
2011 Sukenik S, Politi R, Ziserman L, Danino D, Friedler A, Harries D. Crowding alone cannot account for cosolute effect on amyloid aggregation. Plos One. 6: e15608. PMID 21249221 DOI: 10.1016/J.Bpj.2010.12.1311  0.612
2011 Lavy T, Harries D, Goldblum A. Molecular properties from conformational ensembles. 1. Dipole moments of molecules with multiple internal rotations. The Journal of Physical Chemistry. A. 115: 5794-809. PMID 21210653 DOI: 10.1021/Jp108837A  0.34
2011 Sapir L, Harries D. Linking trehalose self-association with binary aqueous solution equation of state. The Journal of Physical Chemistry. B. 115: 624-34. PMID 21186829 DOI: 10.1021/Jp109780N  0.7
2011 Ben-Yaakov D, Andelman D, Podgornik R, Harries D. Ion-specific hydration effects: Extending the Poisson-Boltzmann theory Current Opinion in Colloid and Interface Science. 16: 542-550. DOI: 10.1016/J.Cocis.2011.04.012  0.551
2011 Sapir L, Shalev DE, Harries D. Osmolytes Induce Changes in the Conformational Landscape of a Model Peptide Biophysical Journal. 100: 396a-397a. DOI: 10.1016/J.Bpj.2010.12.2355  0.706
2010 Galanis J, Nossal R, Harries D. Depletion forces drive polymer-like self-assembly in vibrofluidized granular materials. Soft Matter. 6: 1026-1034. PMID 22039392 DOI: 10.1039/B918034F  0.36
2010 Gurnev PA, Harries D, Parsegian VA, Bezrukov SM. Osmotic stress regulates the strength and kinetics of sugar binding to the maltoporin channel. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 22: 454110. PMID 21339598 DOI: 10.1088/0953-8984/22/45/454110  0.572
2010 Khelashvili G, Pabst G, Harries D. Cholesterol orientation and tilt modulus in DMPC bilayers. The Journal of Physical Chemistry. B. 114: 7524-34. PMID 20518573 DOI: 10.1021/Jp101889K  0.343
2010 Khelashvili G, Harries D. Modeling signaling processes across cellular membranes using a mesoscopic approach Annual Reports in Computational Chemistry. 6: 237-261. DOI: 10.1016/S1574-1400(10)06012-3  0.372
2009 Ben-Yaakov D, Andelman D, Harries D, Podgornik R. Beyond standard Poisson-Boltzmann theory: ion-specific interactions in aqueous solutions. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 21: 424106. PMID 21715841 DOI: 10.1088/0953-8984/21/42/424106  0.568
2009 Khelashvili G, Harries D, Weinstein H. Modeling membrane deformations and lipid demixing upon protein-membrane interaction: the BAR dimer adsorption. Biophysical Journal. 97: 1626-35. PMID 19751667 DOI: 10.1016/J.Bpj.2009.07.006  0.383
2009 Gurnev PA, Harries D, Parsegian VA, Bezrukov SM. The dynamic side of the Hofmeister effect: a single-molecule nanopore study of specific complex formation. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. 10: 1445-9. PMID 19504531 DOI: 10.1002/Cphc.200900312  0.532
2009 Politi R, Sapir L, Harries D. The impact of polyols on water structure in solution: a computational study. The Journal of Physical Chemistry. A. 113: 7548-55. PMID 19432403 DOI: 10.1021/Jp9010026  0.67
2009 Danino D, Kesselman E, Saper G, Petrache HI, Harries D. Osmotically induced reversible transitions in lipid-DNA mesophases. Biophysical Journal. 96: L43-5. PMID 19348739 DOI: 10.1016/J.Bpj.2008.12.3887  0.614
2009 Ben-Yaakov D, Andelman D, Harries D, Podgornik R. Ions in mixed dielectric solvents: density profiles and osmotic pressure between charged interfaces. The Journal of Physical Chemistry. B. 113: 6001-11. PMID 19338312 DOI: 10.1021/Jp9003533  0.568
2009 Khelashvili G, Harries D, Weinstein H. Adsorption Of Bar-domain Proteins To Charged Lipid Membranes Causes Deformations And Lipid Demixing Biophysical Journal. 96: 95a. DOI: 10.1016/J.Bpj.2008.12.401  0.337
2009 Politi R, Sukenik S, Harries D. Osmolytes Control Peptide Folding and Aggregation Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.329  0.362
2008 Teif VB, Harries D, Lando DY, Ben-Shaul A. Matrix formalism for site-specific binding of unstructured proteins to multicomponent lipid membranes. Journal of Peptide Science : An Official Publication of the European Peptide Society. 14: 368-73. PMID 18186025 DOI: 10.1002/Psc.994  0.355
2008 Khelashvili G, Weinstein H, Harries D. Protein diffusion on charged membranes: a dynamic mean-field model describes time evolution and lipid reorganization. Biophysical Journal. 94: 2580-97. PMID 18065451 DOI: 10.1529/Biophysj.107.120667  0.36
2007 Petrache HI, Harries D, Parsegian VA. Measurement of lipid forces by X-ray diffraction and osmotic stress. Methods in Molecular Biology (Clifton, N.J.). 400: 405-19. PMID 17951749 DOI: 10.1007/978-1-59745-519-0_27  0.701
2006 Harries D, Podgornik R, Parsegian VA, Mar-Or E, Andelman D. Ion induced lamellar-lamellar phase transition in charged surfactant systems. The Journal of Chemical Physics. 124: 224702. PMID 16784296 DOI: 10.1063/1.2198534  0.653
2006 Gondré-Lewis MC, Petrache HI, Wassif CA, Harries D, Parsegian A, Porter FD, Loh YP. Abnormal sterols in cholesterol-deficiency diseases cause secretory granule malformation and decreased membrane curvature. Journal of Cell Science. 119: 1876-85. PMID 16636072 DOI: 10.1242/Jcs.02906  0.569
2006 Galanis J, Harries D, Sackett DL, Losert W, Nossal R. Spontaneous patterning of confined granular rods. Physical Review Letters. 96: 028002. PMID 16486645 DOI: 10.1103/Physrevlett.96.028002  0.305
2006 Petrache HI, Tristram-Nagle S, Harries D, Kucerka N, Nagle JF, Parsegian VA. Swelling of phospholipids by monovalent salt. Journal of Lipid Research. 47: 302-9. PMID 16267342 DOI: 10.1194/Jlr.M500401-Jlr200  0.725
2005 Petrache HI, Kimchi I, Harries D, Parsegian VA. Measured depletion of ions at the biomembrane interface. Journal of the American Chemical Society. 127: 11546-7. PMID 16104699 DOI: 10.1021/Ja052549+  0.709
2005 Liang H, Harries D, Wong GC. Polymorphism of DNA-anionic liposome complexes reveals hierarchy of ion-mediated interactions. Proceedings of the National Academy of Sciences of the United States of America. 102: 11173-8. PMID 16061807 DOI: 10.1073/Pnas.0502416102  0.329
2005 Harries D, Rau DC, Parsegian VA. Solutes probe hydration in specific association of cyclodextrin and adamantane. Journal of the American Chemical Society. 127: 2184-90. PMID 15713096 DOI: 10.1021/Ja045541T  0.591
2004 Harries D, Parsegian VA. Gibbs adsorption isotherm combined with Monte Carlo sampling to see action of cosolutes on protein folding. Proteins. 57: 311-21. PMID 15340918 DOI: 10.1002/Prot.20182  0.574
2004 Petrache HI, Tristram-Nagle S, Gawrisch K, Harries D, Parsegian VA, Nagle JF. Structure and fluctuations of charged phosphatidylserine bilayers in the absence of salt. Biophysical Journal. 86: 1574-86. PMID 14990484 DOI: 10.1016/S0006-3495(04)74225-3  0.702
2004 Harries D, Ben-Shaul A, Szleifer I. Enveloping of charged proteins by lipid bilayers Journal of Physical Chemistry B. 108: 1491-1496. DOI: 10.1021/Jp036501Z  0.366
2004 Petrache HI, Harries D, Parsegian VA. Alteration of lipid membrane rigidity by cholesterol and its metabolic precursors Macromolecular Symposia. 219: 39-50. DOI: 10.1002/Masy.200550105  0.684
2003 Harries D, May S, Ben-Shaul A. Curvature and charge modulations in lamellar DNA - Lipid complexes Journal of Physical Chemistry B. 107: 3624-3630. DOI: 10.1021/Jp026637H  0.357
2002 May S, Harries D, Ben-Shaul A. Macroion-induced compositional instability of binary fluid membranes. Physical Review Letters. 89: 268102. PMID 12484858 DOI: 10.1103/Physrevlett.89.268102  0.344
2002 Harries D, May S, Ben-Shaul A. Adsorption of charged macromolecules on mixed fluid membranes Colloids and Surfaces a: Physicochemical and Engineering Aspects. 208: 41-50. DOI: 10.1016/S0927-7757(02)00100-0  0.359
2000 May S, Harries D, Ben-Shaul A. Lipid demixing and protein-protein interactions in the adsorption of charged proteins on mixed membranes. Biophysical Journal. 79: 1747-60. PMID 11023883 DOI: 10.1016/S0006-3495(00)76427-7  0.36
2000 May S, Harries D, Ben-Shaul A. The phase behavior of cationic lipid-DNA complexes. Biophysical Journal. 78: 1681-97. PMID 10733951 DOI: 10.1016/S0006-3495(00)76720-8  0.326
2000 Wagner K, Harries D, May S, Kahl V, Rädler JO, Ben-Shaul A. Direct evidence for counterion release upon cationic lipid-DNA condensation Langmuir. 16: 303-306. DOI: 10.1021/La991268A  0.337
1998 Harries D, May S, Gelbart WM, Ben-Shaul A. Structure, stability, and thermodynamics of lamellar DNA-lipid complexes. Biophysical Journal. 75: 159-73. PMID 9649376 DOI: 10.1016/S0006-3495(98)77503-4  0.329
1997 Harries D, Ben-Shaul A. Conformational chain statistics in a model lipid bilayer: Comparison between mean field and Monte Carlo calculations Journal of Chemical Physics. 106: 1609-1619. DOI: 10.1063/1.473283  0.34
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