Gary Karpen

Affiliations: 
University of California, Berkeley, Berkeley, CA 
Area:
Drosophila genetics, chromosome organization
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"Gary Karpen"
Mean distance: 17.13 (cluster 11)
 
SNBCP
Cross-listing: FlyTree

Parents

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Gerold Schubiger research assistant 1978-1981 (FlyTree)
Charles D. Laird grad student (FlyTree)
Allan Spradling post-doc (FlyTree)

Children

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Tanya L. Daigle research assistant Salk
Terence Murphy grad student (FlyTree)
Robin Truelove grad student (FlyTree)
Amy Rose Strom grad student 2013- UC Berkeley (FlyTree)
Katy M. Donaldson grad student 2000 UCSD (FlyTree)
Keith A. Maggert grad student 2000 UCSD (FlyTree)
Kumar L. Hari grad student 2001 UCSD (FlyTree)
Michael D. Blower grad student 2002 UCSD (Cell Biology Tree)
Jamy C. Peng grad student 2007 UC Berkeley
Sasha A. Langley grad student 2010 UC Berkeley
Kevin Cook post-doc (FlyTree)
Kenneth Dobie post-doc (FlyTree)
Sylvia Erhardt post-doc (FlyTree)
Kristen Johansen post-doc (FlyTree)
Srivarsha Rajshekar post-doc UC Berkeley
Beth Sullivan post-doc (FlyTree)
Xiaoping Sun post-doc (FlyTree)
Alexander Y. Konev post-doc 2000-2004 Salk Institute (FlyTree)
Barbara G. Mellone post-doc 2003-2008 UC Berkeley (FlyTree)
Weiguo Zhang post-doc 2005-2011 UC Berkeley (FlyTree)
Aniek Janssen post-doc 2013-2018 UC Berkeley (Cell Biology Tree)

Collaborators

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Barbara Wakimoto collaborator (FlyTree)
Dmitry V. Fyodorov collaborator 2001-2004 Salk Institute (FlyTree)
BETA: Related publications

Publications

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Altemose N, Logsdon GA, Bzikadze AV, et al. (2022) Complete genomic and epigenetic maps of human centromeres. Science (New York, N.Y.). 376: eabl4178
Lee YCG, Ogiyama Y, Martins NMC, et al. (2020) Pericentromeric heterochromatin is hierarchically organized and spatially contacts H3K9me2 islands in euchromatin. Plos Genetics. 16: e1008673
Deviri D, Strom AR, Karpen G, et al. (2020) Multivalency of Proteins and their Interactions Predict their Phase Separation Biophysical Journal. 118: 58a
Langley SA, Miga KH, Karpen GH, et al. (2019) Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA. Elife. 8
Langley SA, Miga KH, Karpen GH, et al. (2019) Author response: Haplotypes spanning centromeric regions reveal persistence of large blocks of archaic DNA Elife
Deviri D, Strom AR, Colmenares S, et al. (2019) Phase-Separation Driven Heterochromatin Formation: Experiment and Theory Biophysical Journal. 116: 70a
Janssen A, Colmenares SU, Lee T, et al. (2018) Timely double-strand break repair and pathway choice in pericentromeric heterochromatin depend on the histone demethylase dKDM4A. Genes & Development
Janssen A, Colmenares SU, Karpen GH. (2018) Heterochromatin: Guardian of the Genome. Annual Review of Cell and Developmental Biology
Zhang W, Karpen GH, Zhang Q. (2017) Exploring the Role of CENP-A Ser18 Phosphorylation in CIN and Tumorigenesis. Cell Cycle (Georgetown, Tex.). 0
Takada M, Zhang W, Suzuki A, et al. (2017) FBW7 loss promotes chromosomal instability and tumorigenesis via Cyclin E1/CDK2-mediated phosphorylation of CENP-A. Cancer Research
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