Tom Woolf

Affiliations: 
Johns Hopkins University, Baltimore, MD 
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"Tom Woolf"
Mean distance: 13.99 (cluster 6)
 
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Parents

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Gordon M. Shepherd grad student 1985-1990 Yale
Benoit Roux post-doc (Chemistry Tree)

Children

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Jonathan N. Sachs grad student Johns Hopkins (BME Tree)
Juan R. Perilla grad student 2011 Johns Hopkins (Chemistry Tree)
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Publications

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Perilla JR, Woolf TB. (2015) Computing ensembles of transitions with molecular dynamics simulations. Methods in Molecular Biology (Clifton, N.J.). 1215: 237-52
Braiterman LT, Murthy A, Jayakanthan S, et al. (2014) Distinct phenotype of a Wilson disease mutation reveals a novel trafficking determinant in the copper transporter ATP7B. Proceedings of the National Academy of Sciences of the United States of America. 111: E1364-73
Woolf TB. (2013) A tale of two ions and their membrane interactions: clearly the same or clearly different? Biophysical Journal. 104: 746-7
Perilla JR, Leahy DJ, Woolf TB. (2013) Molecular dynamics simulations of transitions for ECD epidermal growth factor receptors show key differences between human and drosophila forms of the receptors. Proteins. 81: 1113-26
Nutanong S, Carey N, Ahmad Y, et al. (2013) Adaptive exploration for large-scale protein analysis in the molecular dynamics database Acm International Conference Proceeding Series
Nagarajan A, Andersen JP, Woolf TB. (2012) Coarse-grained simulations of transitions in the E2-to-E1 conformations for Ca ATPase (SERCA) show entropy-enthalpy compensation. Journal of Molecular Biology. 422: 575-93
Wolfe KC, Hastings WA, Dutta S, et al. (2012) Multiscale modeling of double-helical DNA and RNA: a unification through Lie groups. The Journal of Physical Chemistry. B. 116: 8556-72
Perilla JR, Woolf TB. (2012) Towards the prediction of order parameters from molecular dynamics simulations in proteins. The Journal of Chemical Physics. 136: 164101
Nagarajan A, Andersen JP, Woolf TB. (2012) The role of domain: domain interactions versus domain: water interactions in the coarse-grained simulations of the E1P to E2P transitions in Ca-ATPase (SERCA). Proteins. 80: 1929-47
Michaud-Agrawal N, Denning EJ, Woolf TB, et al. (2011) MDAnalysis: a toolkit for the analysis of molecular dynamics simulations. Journal of Computational Chemistry. 32: 2319-27
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