Ziv Bar-Joseph
Affiliations: | Carnegie Mellon University, Pittsburgh, PA |
Area:
Computer Science, Bioinformatics Biology, StatisticsGoogle:
"Ziv Bar-Joseph"Parents
Sign in to add mentor| David K. Gifford | grad student | Stanford | |
| Tommi S. Jaakkola | grad student | MIT (Neurotree) |
Children
Sign in to add trainee| Qi Song | grad student | 2020- | Carnegie Mellon (Neurotree) |
| Jason Ernst | grad student | 2008 | Carnegie Mellon (Computer Science Tree) |
| Yanjun Qi | grad student | 2008 | Carnegie Mellon |
| Anthony Gitter | grad student | 2012 | Carnegie Mellon |
| Hai-Son P. Le | grad student | 2013 | Carnegie Mellon |
| Saket Navlakha | post-doc | Carnegie Mellon (Neurotree) | |
| Jun Ding | post-doc | 2016-2021 | Carnegie Mellon |
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Publications
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| Hislop J, Song Q, Keshavarz F K, et al. (2023) Modeling post-implantation human development to yolk sac blood emergence. Nature |
| Hislop J, Alavi A, Song Q, et al. (2023) Modelling Human Post-Implantation Development via Extra-Embryonic Niche Engineering. Biorxiv : the Preprint Server For Biology |
| Song Q, Ruffalo M, Bar-Joseph Z. (2023) Using single cell atlas data to reconstruct regulatory networks. Nucleic Acids Research |
| Berger B, Tian D, Li WV, et al. (2022) What are the keys to succeeding as a computational biologist in today's research climate? Cell Systems. 13: 781-785 |
| Li D, Ding J, Bar-Joseph Z. (2022) UNIFAN: A Tool for Unsupervised Single-Cell Clustering and Annotation. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology |
| Song Q, Wang J, Bar-Joseph Z. (2022) scSTEM: clustering pseudotime ordered single-cell data. Genome Biology. 23: 150 |
| Li D, Ding J, Bar-Joseph Z. (2022) Unsupervised cell functional annotation for single-cell RNA-seq. Genome Research |
| Hasanaj E, Wang J, Sarathi A, et al. (2022) Interactive single-cell data analysis using Cellar. Nature Communications. 13: 1998 |
| Li D, Velazquez JJ, Ding J, et al. (2022) TraSig: inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data. Genome Biology. 23: 73 |
| Ding J, Sharon N, Bar-Joseph Z. (2022) Temporal modelling using single-cell transcriptomics. Nature Reviews. Genetics |