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Rafal Adamczak, PhD

Affiliations: 
of Informatics Nicolaus Copernicus University 
Area:
neural networks, machine learning, data mining, bioinformatics
Website:
http://www.fizyka.umk.pl/~raad/
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"Rafal Adamczak"
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Wlodzislaw Duch grad student 1994-2001 Nicolaus Copernicus University

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Publications

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Phatak M, Adamczak R, Cao B, et al. (2011) Solvent and lipid accessibility prediction as a basis for model quality assessment in soluble and membrane proteins. Current Protein & Peptide Science. 12: 563-73
Adamczak R, Pillardy J, Vallat BK, et al. (2011) Fast geometric consensus approach for protein model quality assessment. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1807-18
Swaminathan K, Adamczak R, Porollo A, et al. (2010) Enhanced prediction of conformational flexibility and phosphorylation in proteins. Advances in Experimental Medicine and Biology. 680: 307-19
Cushion MT, Smulian AG, Slaven BE, et al. (2007) Transcriptome of Pneumocystis carinii during fulminate infection: carbohydrate metabolism and the concept of a compatible parasite. Plos One. 2: e423
Cao B, Porollo A, Adamczak R, et al. (2006) Enhanced recognition of protein transmembrane domains with prediction-based structural profiles. Bioinformatics (Oxford, England). 22: 303-9
Wagner M, Adamczak R, Porollo A, et al. (2005) Linear regression models for solvent accessibility prediction in proteins. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 12: 355-69
Adamczak R, Porollo A, Meller J. (2005) Combining prediction of secondary structure and solvent accessibility in proteins. Proteins. 59: 467-75
Adamczak R, Porollo A, Meller J. (2004) Accurate prediction of solvent accessibility using neural networks-based regression. Proteins. 56: 753-67
Porollo AA, Adamczak R, Meller J. (2004) POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins. Bioinformatics (Oxford, England). 20: 2460-2
Adamczak R, Meller J. (2004) On the transferability of folding and threading potentials and sequence-independent filters for protein folding simulations Molecular Physics. 102: 1291-1305
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