Mark A. Ragan, PhD

Affiliations: 
Institute for Molecular Bioscience University of Queensland, Saint Lucia, Queensland, Australia 
Area:
Computational Biology, Bioinformatics
Google:
"Mark Ragan"
Mean distance: 23.04
 
Cross-listing: Chemistry Tree - Computational Biology Tree

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Publications

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Nones K, Johnson J, Newell F, et al. (2019) Whole-genome sequencing reveals clinically relevant insights into the aetiology of familial breast cancers. Annals of Oncology : Official Journal of the European Society For Medical Oncology
Bernard G, Chan CX, Chan YB, et al. (2017) Alignment-free inference of hierarchical and reticulate phylogenomic relationships. Briefings in Bioinformatics
Fard AT, Srihari S, Mar JC, et al. (2016) Not just a colourful metaphor: modelling the landscape of cellular development using Hopfield networks. Npj Systems Biology and Applications. 2: 16001
Cong Y, Chan YB, Ragan MA. (2016) A novel alignment-free method for detection of lateral genetic transfer based on TF-IDF. Scientific Reports. 6: 30308
Cong Y, Chan YB, Ragan MA. (2016) Exploring lateral genetic transfer among microbial genomes using TF-IDF. Scientific Reports. 6: 29319
Bernard G, Chan CX, Ragan MA. (2016) Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer. Scientific Reports. 6: 28970
Stephens TG, Bhattacharya D, Ragan MA, et al. (2016) PhySortR: a fast, flexible tool for sorting phylogenetic trees in R. Peerj. 4: e2038
Srihari S, Kalimutho M, Lal S, et al. (2016) Understanding the functional impact of copy number alterations in breast cancer using a network modeling approach. Molecular Biosystems
Liu C, Srihari S, Lal S, et al. (2015) Personalised pathway analysis reveals association between DNA repair pathway dysregulation and chromosomal instability in sporadic breast cancer. Molecular Oncology
Srihari S, Singla J, Wong L, et al. (2015) Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer. Biology Direct. 10: 57
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