James J. Collins, PhD

Affiliations: 
Biological Engineering Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
Systems Biology, Synthetic Biology
Website:
http://collinslab.mit.edu/
Google:
"James Collins"
Bio:

https://en.wikipedia.org/wiki/James_Collins_(bioengineer)

Mean distance: 14.72 (cluster 17)
 
Cross-listing: Computational Biology Tree - Chemistry Tree - Cell Biology Tree

Parents

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John O’Connor grad student Oxford University, UK (Chemistry Tree)

Children

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Meagan Hamblin research assistant (ID Tree)
Nima Dehghani grad student Boston University
Timothy S. Gardner grad student 2000 Boston University (Cell Biology Tree)
Kristen A. Richardson grad student 2001 Boston University
Anthony P. Scinicariello grad student 2002 Boston University (Computational Biology Tree)
William J. Blake grad student 2003 Boston University (Computational Biology Tree)
Attila A. Priplata grad student 2005 Boston University (Computational Biology Tree)
Nicholas J. Guido grad student 2006 Boston University (Computational Biology Tree)
Daniel John Dwyer grad student 2007 Boston University (Cell Biology Tree)
Boris Hayete grad student 2007 Boston University (Computational Biology Tree)
Timothy K. Lu grad student 2008 Harvard-MIT Division of Health Sciences and Technology (Chemistry Tree)
Kevin F. Murphy grad student 2008 Boston University (Cell Biology Tree)
Tara L. Deans grad student 2009 Boston University (Computational Biology Tree)
Michael A. Kohanski grad student 2009 Boston University (Computational Biology Tree)
David R. Lorenz grad student 2009 Boston University (Computational Biology Tree)
Ayla Ergun grad student 2010 Boston University (Computational Biology Tree)
Ari E. Friedland grad student 2010 Boston University (Computational Biology Tree)
Michael S. Koris grad student 2010 Boston University (Computational Biology Tree)
Carolyn A. Lawrence grad student 2010 Boston University (Computational Biology Tree)
Ellen C. O'Shaughnessy grad student 2010 Boston University (Computational Biology Tree)
Jarred M. Callura grad student 2012 Boston University (Computational Biology Tree)
Devora Cohen-Karni grad student 2012 Boston University (Computational Biology Tree)
Alexander M. Fichtenholtz grad student 2012 Boston University (Computational Biology Tree)
Henry Hung-Yi Lee grad student 2012 Boston University (Cell Biology Tree)
Kevin D. Litcofsky grad student 2012 Boston University (Computational Biology Tree)
Jonathan Alexander Winkler grad student 2012 Boston University (Cell Biology Tree)
Kyle R. Allison grad student 2013 Boston University (Computational Biology Tree)
Sheetal Modi grad student 2013 Boston University (Computational Biology Tree)
Catherine S. Spina grad student 2013 Boston University (Computational Biology Tree)
Nicole M. Vega grad student 2013 Boston University (Computational Biology Tree)
Raffi B. Afeyan grad student 2014 Boston University (Computational Biology Tree)
Hu Li post-doc MIT
Emma J Chory post-doc 2018- MIT (Chemistry Tree)
Daichi Nozaki post-doc 1997-1998
Mark P. Brynildsen post-doc 2008-2010 Boston University (Chemistry Tree)
Jason H. Yang post-doc 2012-2019 MIT (Computational Biology Tree)
Xuejun Zhu post-doc 2017-2019 MIT (Chemistry Tree)
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Publications

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Wong F, Stokes JM, Cervantes B, et al. (2021) Cytoplasmic condensation induced by membrane damage is associated with antibiotic lethality. Nature Communications. 12: 2321
Lopatkin AJ, Bening SC, Manson AL, et al. (2021) Clinically relevant mutations in core metabolic genes confer antibiotic resistance. Science (New York, N.Y.). 371
Robinson-McCarthy LR, Mijalis AJ, Filsinger GT, et al. (2021) Anomalous COVID-19 tests hinder researchers. Science (New York, N.Y.). 371: 244-245
Bojar D, Powers RK, Camacho DM, et al. (2020) Deep-Learning Resources for Studying Glycan-Mediated Host-Microbe Interactions. Cell Host & Microbe
Angenent-Mari NM, Garruss AS, Soenksen LR, et al. (2020) A deep learning approach to programmable RNA switches. Nature Communications. 11: 5057
Xing QR, El Farran CA, Gautam P, et al. (2020) Diversification of reprogramming trajectories revealed by parallel single-cell transcriptome and chromatin accessibility sequencing. Science Advances. 6
Zheng EJ, Stokes JM, Collins JJ. (2020) Eradicating Bacterial Persisters with Combinations of Strongly and Weakly Metabolism-Dependent Antibiotics. Cell Chemical Biology
Johnston CW, Badran AH, Collins JJ. (2020) Continuous bioactivity-dependent evolution of an antibiotic biosynthetic pathway. Nature Communications. 11: 4202
Xing QR, El Farran CA, Zeng YY, et al. (2020) Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility. Genome Research
Stokes JM, Yang K, Swanson K, et al. (2020) A Deep Learning Approach to Antibiotic Discovery. Cell. 181: 475-483
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