Pemra Doruker

Affiliations: 
Chemical Engineering Bogazici University, Istanbul, Turkey 
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"Pemra Doruker"
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Kaynak BT, Krieger JM, Dudas B, et al. (2022) Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods. Frontiers in Molecular Biosciences. 9: 832847
Sutkeviciute I, Lee JY, White AD, et al. (2021) Precise druggability of the PTH type 1 receptor. Nature Chemical Biology
Kaynak BT, Zhang S, Bahar I, et al. (2021) ClustENMD: Efficient sampling of biomolecular conformational space at atomic resolution. Bioinformatics (Oxford, England)
Zhang S, Krieger JM, Zhang Y, et al. (2021) ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python. Bioinformatics (Oxford, England)
Kaynak BT, Bahar I, Doruker P. (2020) Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions. Computational and Structural Biotechnology Journal. 18: 1577-1586
Clark LJ, Krieger J, White AD, et al. (2020) Allosteric interactions in the parathyroid hormone GPCR-arrestin complex formation. Nature Chemical Biology
Krieger JM, Doruker P, Scott AL, et al. (2020) Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods. Current Opinion in Structural Biology. 64: 34-41
Li H, Doruker P, Hu G, et al. (2020) Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding. Biophysical Journal
Zhang Y, Doruker P, Kaynak B, et al. (2019) Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior. Current Opinion in Structural Biology. 62: 14-21
Can MT, Kurkcuoglu Z, Ezeroglu G, et al. (2017) Conformational dynamics of bacterial trigger factor in apo and ribosome-bound states. Plos One. 12: e0176262
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