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Pavel A. Brodskiy

2013- Chemical and Biomolecular Engineering University of Notre Dame, Notre Dame, IN, United States 
Computational Biology
"Pavel Brodskiy"

Seven years of research experience in quantitative biology.

Expertise in all aspects of data analysis including:
1) Statistically-driven experimental design
2) Data collection and cleaning
3) Image analysis and feature extraction
4) Feature selection, model selection, and calibration
5) Statistical interpretation of results and visualization

Working on thesis titled: multi-scale high-content analysis for mechanism prediction and drug design

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Donald Sakaguchi research assistant 2010-2013 Iowa State
Jeremiah James Zartman grad student 2013-2018 Notre Dame (Chemistry Tree)
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Kumar N, Huizar FJ, Farfán-Pira KJ, et al. (2022) MAPPER: An Open-Source, High-Dimensional Image Analysis Pipeline Unmasks Differential Regulation of Wing Features. Frontiers in Genetics. 13: 869719
Brodskiy PA, Wu Q, Soundarrajan DK, et al. (2019) Decoding Calcium Signaling Dynamics during Drosophila Wing Disc Development. Biophysical Journal
Liang P, Chen J, Brodskiy PA, et al. (2018) A NEW REGISTRATION APPROACH FOR DYNAMIC ANALYSIS OF CALCIUM SIGNALS IN ORGANS. Proceedings. Ieee International Symposium On Biomedical Imaging. 2018: 934-937
Brodskiy PA, Zartman JJ. (2018) Calcium as a signal integrator in developing epithelial tissues. Physical Biology. 15: 051001
Brodskiy PA, Wu Q, Kumar NK, et al. (2018) Mapping the calcium signalsome during Drosophila wing development Ifac-Papersonline. 51: 108-109
Nematbakhsh A, Sun W, Brodskiy PA, et al. (2017) Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia. Plos Computational Biology. 13: e1005533
Narciso C, Cowdrick KR, Zellmer V, et al. (2016) On-chip three-dimensional tissue histology for microbiopsies Biomicrofluidics. 10
Nematbakhsh A, Brodskiy P, Xu Z, et al. (2016) Multi-scale Computational Model of Epithelial Cell Proliferation and Mechanics Biophysical Journal. 110: 307a
Kursawe J, Brodskiy PA, Zartman JJ, et al. (2015) Capabilities and Limitations of Tissue Size Control through Passive Mechanical Forces. Plos Computational Biology. 11: e1004679
Narciso C, Wu Q, Brodskiy P, et al. (2015) Patterning of wound-induced intercellular Ca(2+) flashes in a developing epithelium. Physical Biology. 12: 056005
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