Duygu Ucar

2011-2014 Jackson Laboratory for Genomic Medicine 
"Duygu Ucar"
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Karakaslar EO, Katiyar N, Hasham M, et al. (2023) Transcriptional activation of Jun and Fos members of the AP-1 complex is a conserved signature of immune aging that contributes to inflammaging. Aging Cell. e13792
Thibodeau A, Khetan S, Eroglu A, et al. (2021) CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data. Plos Computational Biology. 17: e1009670
Pereira BI, De Maeyer RPH, Covre LP, et al. (2020) Sestrins induce natural killer function in senescent-like CD8 T cells. Nature Immunology
Lawlor N, Marquez EJ, Lee D, et al. (2020) V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single cell RNA-seq data. Bioinformatics (Oxford, England)
Lawlor N, Márquez EJ, Orchard P, et al. (2019) Multiomic Profiling Identifies cis-Regulatory Networks Underlying Human Pancreatic β Cell Identity and Function. Cell Reports. 26: 788-801.e6
Varshney A, VanRenterghem H, Orchard P, et al. (2018) Cell Specificity of Human Regulatory Annotations and Their Genetic Effects on Gene Expression. Genetics
Caielli S, Veiga DT, Balasubramanian P, et al. (2018) A CD4 T cell population expanded in lupus blood provides B cell help through interleukin-10 and succinate. Nature Medicine
Lee D, Cheng A, Lawlor N, et al. (2018) Detection of correlated hidden factors from single cell transcriptomes using Iteratively Adjusted-SVA (IA-SVA). Scientific Reports. 8: 17040
Youn A, Marquez EJ, Lawlor N, et al. (2018) BiFET: sequencing Bias-free transcription factor Footprint Enrichment Test. Nucleic Acids Research
Thibodeau A, Uyar A, Khetan S, et al. (2018) A neural network based model effectively predicts enhancers from clinical ATAC-seq samples. Scientific Reports. 8: 16048
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