Ben Langmead

Computer Science Johns Hopkins University, Baltimore, MD 
"Ben Langmead"
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Darby CA, Gaddipati R, Schatz MC, et al. (2020) Vargas: heuristic-free alignment for assessing linear and graph read aligners. Bioinformatics (Oxford, England)
Darby CA, Fitch JR, Brennan PJ, et al. (2019) Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads. Iscience. 18: 1-10
Nellore A, Wilks C, Hansen KD, et al. (2016) Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce. Bioinformatics (Oxford, England)
Frazee AC, Jaffe AE, Langmead B, et al. (2015) Polyester: simulating RNA-seq datasets with differential transcript expression. Bioinformatics (Oxford, England)
Wilton R, Budavari T, Langmead B, et al. (2015) Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space. Peerj. 3: e808
Kim D, Langmead B, Salzberg SL. (2015) HISAT: a fast spliced aligner with low memory requirements. Nature Methods. 12: 357-60
Frazee AC, Pertea G, Jaffe AE, et al. (2015) Ballgown bridges the gap between transcriptome assembly and expression analysis. Nature Biotechnology. 33: 243-6
Hansen KD, Sabunciyan S, Langmead B, et al. (2014) Large-scale hypomethylated blocks associated with Epstein-Barr virus-induced B-cell immortalization. Genome Research. 24: 177-84
Schatz MC, Langmead B. (2013) The DNA Data Deluge: Fast, efficient genome sequencing machines are spewing out more data than geneticists can analyze. Ieee Spectrum. 50: 26-33
Herb BR, Wolschin F, Hansen KD, et al. (2012) Reversible switching between epigenetic states in honeybee behavioral subcastes. Nature Neuroscience. 15: 1371-3
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