João PGLM Rodrigues
Affiliations: | Utrecht University, Utrecht, Netherlands |
Area:
Computational Structural BiologyGoogle:
"João Rodrigues"Mean distance: 10.46 | S | N | B | C | P |
Parents
Sign in to add mentor| Michael Levitt | research assistant | Utrecht | |
| Adrien SJ Melquiond | research assistant | Utrecht | |
| Alexandre MJJ Bonvin | grad student | 2010-2014 | Utrecht |
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Publications
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| Rodrigues JP, Barrera-Vilarmau S, Teixeira JM, et al. (2020) Insights on cross-species transmission of SARS-CoV-2 from structural modeling. Biorxiv : the Preprint Server For Biology |
| Rodrigues J, Levitt M. (2019) interfacea: open-source library for protein interface analysis F1000research. 8 |
| Pataki CI, Rodrigues J, Zhang L, et al. (2018) Proteomic analysis of monolayer-integrated proteins on lipid droplets identifies amphipathic interfacial α-helical membrane anchors. Proceedings of the National Academy of Sciences of the United States of America |
| Abayev M, Rodrigues JP, Srivastava G, et al. (2018) The solution structure of monomeric CCL5 in complex with a doubly-sulfated N-terminal segment of CCR5. The Febs Journal |
| Geng C, Narasimhan S, Rodrigues JP, et al. (2017) Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK. Methods in Molecular Biology (Clifton, N.J.). 1561: 109-138 |
| Vangone A, Rodrigues JP, Xue LC, et al. (2016) Sense and Simplicity in HADDOCK Scoring: Lessons from CASP-CAPRI Round1. Proteins |
| Xue LC, Rodrigues JP, Kastritis PL, et al. (2016) PRODIGY: a web server for predicting the binding affinity of protein-protein complexes. Bioinformatics (Oxford, England) |
| Liu Y, Rodrigues JP, Bonvin AM, et al. (2016) New insight in the catalytic mechanism of bacterial MraY from enzyme kinetics and docking studies. The Journal of Biological Chemistry |
| Lensink MF, Velankar S, Kryshtafovych A, et al. (2016) Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment. Proteins |
| Xue LC, Rodrigues JP, Dobbs D, et al. (2016) Template-based protein-protein docking exploiting pairwise interfacial residue restraints. Briefings in Bioinformatics |