Daehwan Kim

Affiliations: 
2013 University of Maryland, College Park, College Park, MD 
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"Daehwan Kim"
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Donghoon M. Lee research scientist 2020- UT Southwestern (FlyTree)
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Publications

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Kim D, Song L, Breitwieser FP, et al. (2016) Centrifuge: rapid and sensitive classification of metagenomic sequences. Genome Research
Pertea M, Kim D, Pertea GM, et al. (2016) Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nature Protocols. 11: 1650-1667
Kim D, Langmead B, Salzberg SL. (2015) HISAT: a fast spliced aligner with low memory requirements. Nature Methods. 12: 357-60
Kim D, Pertea G, Trapnell C, et al. (2013) TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology. 14: R36
Trapnell C, Roberts A, Goff L, et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature Protocols. 7: 562-78
Kim D, Salzberg SL. (2011) TopHat-Fusion: an algorithm for discovery of novel fusion transcripts. Genome Biology. 12: R72
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