Carlton Kingsford
Affiliations: | 2005-2007 | Computer Science | University of Maryland, College Park, College Park, MD |
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Parents
Sign in to add mentor| Mona Singh | grad student | Princeton (Computer Science Tree) | |
| Steven Salzberg | post-doc | 2005-2007 | University of Maryland |
Children
Sign in to add trainee| Saket Navlakha | grad student | University of Maryland | |
| Rob Patro | grad student | (Computer Science Tree) | |
| Natalie Sauerwald | grad student | 2015-2020 | Carnegie Mellon |
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Publications
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| Sauerwald N, Kingsford C. (2018) Quantifying the similarity of topological domains across normal and cancer human cell types. Bioinformatics (Oxford, England). 34: i475-i483 |
| Sauerwald N, Zhang S, Kingsford C, et al. (2017) Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings. Nucleic Acids Research |
| Patro R, Duggal G, Love MI, et al. (2017) Salmon provides fast and bias-aware quantification of transcript expression. Nature Methods |
| Patro R, Norel R, Prill RJ, et al. (2016) A computational method for designing diverse linear epitopes including citrullinated peptides with desired binding affinities to intravenous immunoglobulin. Bmc Bioinformatics. 17: 155 |
| Patro R, Kingsford C. (2015) Data-dependent bucketing improves reference-free compression of sequencing reads. Bioinformatics (Oxford, England). 31: 2770-7 |
| Kingsford C, Patro R. (2015) Reference-based compression of short-read sequences using path encoding. Bioinformatics (Oxford, England). 31: 1920-8 |
| Filippova D, Patro R, Duggal G, et al. (2014) Identification of alternative topological domains in chromatin. Algorithms For Molecular Biology : Amb. 9: 14 |
| Patro R, Mount SM, Kingsford C. (2014) Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms. Nature Biotechnology. 32: 462-4 |
| Patro R, Kingsford C. (2013) Predicting protein interactions via parsimonious network history inference. Bioinformatics (Oxford, England). 29: i237-46 |
| Duggal G, Patro R, Sefer E, et al. (2013) Resolving spatial inconsistencies in chromosome conformation measurements. Algorithms For Molecular Biology : Amb. 8: 8 |