Todd Treangen

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2010-2012 Computer Science University of Maryland, College Park, College Park, MD 
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Chopyk J, Nasko DJ, Allard S, et al. (2019) Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications. Water Research. 169: 115250
Ghurye J, Treangen T, Fedarko M, et al. (2019) MetaCarvel: linking assembly graph motifs to biological variants. Genome Biology. 20: 174
Treangen TJ, Pop M. (2018) You can't always sequence your way out of a tight spot: Next-generation sequencing holds great promise for pathogen detection, but the devil is in the details. Embo Reports
Meisel JS, Nasko DJ, Brubach B, et al. (2018) Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018. Microbiome. 6: 197
Nasko DJ, Koren S, Phillippy AM, et al. (2018) RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification. Genome Biology. 19: 165
Olson ND, Treangen TJ, Hill CM, et al. (2017) Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes. Briefings in Bioinformatics
Venkateswaran K, Checinska Sielaff A, Ratnayake S, et al. (2017) Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station. Genome Announcements. 5
Davison M, Treangen TJ, Koren S, et al. (2016) Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers. Plos One. 11: e0160574
Ondov BD, Treangen TJ, Melsted P, et al. (2016) Mash: fast genome and metagenome distance estimation using MinHash. Genome Biology. 17: 132
Treangen TJ, Schoeler G, Phillippy AM, et al. (2016) Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru. Plos Neglected Tropical Diseases. 10: e0004440
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